Wall clock time and date at job start Wed Apr 1 2020 00:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47402 * 2 1 4 4 O 1.45197 * 109.46970 * 240.00130 * 2 1 3 5 5 C 1.34231 * 117.00340 * 90.00435 * 4 2 1 6 6 O 1.20828 * 119.99527 * 359.97438 * 5 4 2 7 7 C 1.50693 * 120.00188 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47579 * 299.99937 * 7 5 4 9 9 C 1.53000 * 109.47149 * 59.99764 * 7 5 4 10 10 C 1.53003 * 109.47308 * 59.99731 * 9 7 5 11 11 C 1.53003 * 109.47020 * 60.00062 * 10 9 7 12 12 C 1.53006 * 109.47147 * 300.00408 * 11 10 9 13 13 H 1.09004 * 109.46828 * 299.99733 * 12 11 10 14 14 C 1.50697 * 109.47194 * 180.02562 * 12 11 10 15 15 O 1.20833 * 119.99747 * 240.00031 * 14 12 11 16 16 O 1.34230 * 120.00262 * 59.71653 * 14 12 11 17 17 C 1.52996 * 109.47352 * 59.99625 * 12 11 10 18 18 C 1.50702 * 109.47258 * 120.00148 * 2 1 3 19 19 O 1.21286 * 120.00082 * 119.99553 * 18 2 1 20 20 N 1.34782 * 120.00030 * 300.00093 * 18 2 1 21 21 C 1.46500 * 119.99443 * 359.97438 * 20 18 2 22 22 C 1.46496 * 119.99761 * 179.97438 * 20 18 2 23 23 C 1.50695 * 109.47214 * 90.00227 * 22 20 18 24 24 H 1.08005 * 120.00303 * 359.97438 * 23 22 20 25 25 C 1.37885 * 120.00050 * 179.97438 * 23 22 20 26 26 N 1.31512 * 119.99594 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99961 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46998 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46944 * 120.00135 * 27 25 23 30 30 H 1.48499 * 109.47054 * 240.00078 * 27 25 23 31 31 H 1.09004 * 109.47017 * 299.99754 * 1 2 3 32 32 H 1.08997 * 109.47319 * 59.99577 * 1 2 3 33 33 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47559 * 179.97438 * 9 7 5 35 35 H 1.08994 * 109.47175 * 299.99970 * 9 7 5 36 36 H 1.08994 * 109.47547 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.46943 * 300.00540 * 10 9 7 38 38 H 1.09001 * 109.47249 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.47038 * 60.00012 * 11 10 9 40 40 H 0.96699 * 116.99771 * 180.27188 * 16 14 12 41 41 H 1.09004 * 109.47066 * 60.00254 * 17 12 11 42 42 H 1.08994 * 109.47405 * 180.02562 * 17 12 11 43 43 H 1.09000 * 109.46768 * 90.00647 * 21 20 18 44 44 H 1.09001 * 109.46485 * 209.99770 * 21 20 18 45 45 H 1.08993 * 109.47471 * 329.99474 * 21 20 18 46 46 H 1.09005 * 109.46473 * 209.99434 * 22 20 18 47 47 H 1.08996 * 109.47156 * 329.99466 * 22 20 18 48 48 H 0.97002 * 119.99349 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2171 0.0640 -2.2811 6 8 1.9974 1.2518 -2.2505 7 6 2.7192 -0.5770 -3.5491 8 1 3.6883 -1.0400 -3.3632 9 6 1.7243 -1.6441 -4.0098 10 6 0.3639 -0.9942 -4.2709 11 6 0.5084 0.0719 -5.3587 12 6 1.5035 1.1390 -4.8981 13 1 1.1402 1.6027 -3.9809 14 6 1.6453 2.1895 -5.9693 15 8 2.7239 2.3971 -6.4728 16 8 0.5724 2.8905 -6.3681 17 6 2.8637 0.4892 -4.6370 18 6 2.0323 -0.7104 1.2304 19 8 2.7295 -1.6966 1.1191 20 7 1.7067 -0.2500 2.4546 21 6 0.8649 0.9414 2.5890 22 6 2.1946 -0.9410 3.6507 23 6 3.5223 -0.3581 4.0611 24 1 3.9592 0.4464 3.4881 25 6 4.1793 -0.8518 5.1683 26 7 3.6470 -1.8310 5.8664 27 14 5.8253 -0.1296 5.6766 28 1 6.2032 0.9535 4.7335 29 1 5.7195 0.4251 7.0501 30 1 6.8615 -1.1930 5.6508 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.0872 -2.1074 -4.9272 35 1 1.6213 -2.4036 -3.2349 36 1 -0.3448 -1.7543 -4.5995 37 1 0.0008 -0.5305 -3.3537 38 1 -0.4606 0.5352 -5.5444 39 1 0.8716 -0.3917 -6.2759 40 1 0.7120 3.5507 -7.0608 41 1 3.2269 0.0255 -5.5542 42 1 3.5725 1.2492 -4.3084 43 1 -0.1832 0.6438 2.6222 44 1 1.1228 1.4666 3.5087 45 1 1.0288 1.6002 1.7363 46 1 1.4765 -0.8153 4.4611 47 1 2.3153 -2.0022 3.4334 48 1 4.1094 -2.1785 6.6450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827817103.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:34 Heat of formation + Delta-G solvation = -221.693273 kcal Electronic energy + Delta-G solvation = -31090.443356 eV Core-core repulsion = 26724.315999 eV Total energy + Delta-G solvation = -4366.127357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45494 -40.46160 -39.23110 -37.89059 -36.39001 -36.27446 -34.97946 -32.99148 -32.22252 -31.37946 -31.20578 -27.70729 -26.29855 -25.05073 -24.87634 -23.95654 -22.53418 -21.84930 -21.07305 -19.88263 -18.89951 -18.28997 -17.61765 -17.21727 -16.57471 -16.53485 -16.22668 -15.94628 -15.74458 -15.30811 -15.17021 -14.66023 -14.36858 -14.17090 -13.95642 -13.58706 -13.41965 -13.06540 -13.02214 -12.81271 -12.62105 -12.52715 -12.34758 -12.19130 -12.13982 -11.83508 -11.70233 -11.54906 -11.40008 -11.34862 -11.18034 -11.10364 -10.91312 -10.73716 -10.62660 -10.57463 -10.48547 -10.19911 -10.17045 -9.65988 -8.93952 -8.47619 -7.75931 -6.08545 -4.13426 1.93528 2.10881 2.44698 2.73864 3.23238 3.28063 3.36021 3.40675 3.83219 4.19110 4.28093 4.33373 4.41904 4.60792 4.67532 4.73744 4.82030 4.91301 4.97102 5.04253 5.05013 5.09125 5.22497 5.26321 5.32476 5.45632 5.50941 5.59115 5.61442 5.61819 5.66491 5.73071 5.80461 5.85383 5.86523 5.89811 5.99524 6.18831 6.20823 6.45318 6.95221 7.35867 7.43433 7.60889 7.68493 7.87689 8.17317 8.25976 8.81818 8.96644 9.51857 10.99635 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.002460 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.343538 B =11378.600568 C =11663.658732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 H 0.106 0.894 4 O -0.321 6.321 5 C 0.468 3.532 6 O -0.511 6.511 7 C -0.080 4.080 8 H 0.120 0.880 9 C -0.116 4.116 10 C -0.124 4.124 11 C -0.110 4.110 12 C -0.095 4.095 13 H 0.135 0.865 14 C 0.487 3.513 15 O -0.518 6.518 16 O -0.516 6.516 17 C -0.088 4.088 18 C 0.508 3.492 19 O -0.520 6.520 20 N -0.596 5.596 21 C 0.076 3.924 22 C 0.246 3.754 23 C -0.528 4.528 24 H 0.058 0.942 25 C 0.061 3.939 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.282 1.282 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.408 0.592 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.695 5.367 -22.971 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 H 0.123 0.877 4 O -0.236 6.236 5 C 0.311 3.689 6 O -0.400 6.400 7 C -0.099 4.099 8 H 0.138 0.862 9 C -0.153 4.153 10 C -0.161 4.161 11 C -0.148 4.148 12 C -0.114 4.114 13 H 0.152 0.848 14 C 0.330 3.670 15 O -0.406 6.406 16 O -0.328 6.328 17 C -0.125 4.125 18 C 0.293 3.707 19 O -0.395 6.395 20 N -0.329 5.329 21 C -0.068 4.068 22 C 0.128 3.872 23 C -0.567 4.567 24 H 0.076 0.924 25 C -0.141 4.141 26 N -0.533 5.533 27 Si 0.726 3.274 28 H -0.198 1.198 29 H -0.209 1.209 30 H -0.208 1.208 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.266 0.734 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.132 4.819 -22.624 25.253 hybrid contribution 1.045 1.158 0.046 1.560 sum -9.086 5.977 -22.578 25.061 Atomic orbital electron populations 1.22396 0.92467 1.04072 1.04261 1.22619 0.95653 0.97677 0.83015 0.87680 1.86619 1.76176 1.41350 1.19408 1.23747 0.73837 0.85803 0.85500 1.90559 1.48680 1.16711 1.84079 1.21143 1.02169 0.97440 0.89125 0.86224 1.21619 0.93907 0.96874 1.02911 1.21616 0.97458 0.98113 0.98917 1.21564 0.98836 0.95378 0.99025 1.21410 0.98880 0.93476 0.97585 0.84799 1.23553 0.81167 0.80557 0.81765 1.90715 1.28459 1.66286 1.55154 1.84549 1.40324 1.51261 1.56645 1.21332 0.95678 0.97474 0.98030 1.19779 0.81716 0.85406 0.83837 1.90707 1.36932 1.26016 1.85873 1.48064 1.49846 1.28322 1.06697 1.21883 0.93948 0.88041 1.02933 1.19357 0.94400 0.93745 0.79724 1.21460 1.04806 1.19195 1.11262 0.92382 1.24936 0.98002 0.94925 0.96210 1.69940 1.38950 1.26047 1.18333 0.86431 0.83648 0.79085 0.78210 1.19782 1.20909 1.20805 0.88892 0.91427 0.90984 0.89936 0.89563 0.90401 0.91685 0.90379 0.91205 0.73387 0.89434 0.89891 0.93008 0.90317 0.92301 0.94586 0.93633 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.18 37.15 0.34 -1.78 16 2 C 0.07 1.10 2.18 -27.89 -0.06 1.04 16 3 H 0.11 1.64 6.41 -51.93 -0.33 1.30 16 4 O -0.32 -5.03 9.32 -45.91 -0.43 -5.46 16 5 C 0.47 6.16 5.72 36.00 0.21 6.37 16 6 O -0.51 -7.34 12.88 -18.75 -0.24 -7.58 16 7 C -0.08 -0.77 3.11 -91.77 -0.29 -1.06 16 8 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 9 C -0.12 -0.89 5.39 -26.73 -0.14 -1.04 16 10 C -0.12 -0.90 5.70 -26.73 -0.15 -1.05 16 11 C -0.11 -0.78 5.13 -26.73 -0.14 -0.92 16 12 C -0.09 -0.88 2.33 -91.77 -0.21 -1.09 16 13 H 0.13 1.45 5.52 -51.93 -0.29 1.17 16 14 C 0.49 4.85 7.63 36.00 0.27 5.13 16 15 O -0.52 -6.59 16.74 -18.76 -0.31 -6.91 16 16 O -0.52 -3.87 13.32 -39.26 -0.52 -4.39 16 17 C -0.09 -0.83 3.66 -26.73 -0.10 -0.93 16 18 C 0.51 10.67 7.15 -10.98 -0.08 10.59 16 19 O -0.52 -13.29 16.08 -14.11 -0.23 -13.51 16 20 N -0.60 -12.40 2.86 -182.96 -0.52 -12.92 16 21 C 0.08 1.15 8.80 59.85 0.53 1.67 16 22 C 0.25 6.34 5.16 -5.20 -0.03 6.31 16 23 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 24 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 25 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 26 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 27 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 28 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.09 1.01 4.53 -51.93 -0.24 0.77 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.56 7.22 -51.93 -0.37 0.18 16 38 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.41 1.36 9.10 45.56 0.41 1.77 16 41 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 43 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 44 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 46 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 47 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -36.44 388.01 -7.44 -43.88 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.47 Total: 0.15 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -0.27 Total: 9.67 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.21 Total: -38.50 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.73 Total: -37.85 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.44 -7.44 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827817103.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.815 kcal (2) G-P(sol) polarization free energy of solvation -36.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds