Wall clock time and date at job start Wed Apr 1 2020 00:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47402 * 2 1 4 4 O 1.45197 * 109.46970 * 240.00130 * 2 1 3 5 5 C 1.34231 * 117.00340 * 90.00435 * 4 2 1 6 6 O 1.20828 * 119.99527 * 359.97438 * 5 4 2 7 7 C 1.50693 * 120.00188 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47579 * 299.99937 * 7 5 4 9 9 C 1.53000 * 109.47149 * 59.99764 * 7 5 4 10 10 C 1.53003 * 109.47308 * 59.99731 * 9 7 5 11 11 C 1.53003 * 109.47020 * 60.00062 * 10 9 7 12 12 C 1.53006 * 109.47147 * 300.00408 * 11 10 9 13 13 H 1.09004 * 109.46828 * 299.99733 * 12 11 10 14 14 C 1.50697 * 109.47194 * 180.02562 * 12 11 10 15 15 O 1.20833 * 119.99747 * 240.00031 * 14 12 11 16 16 O 1.34230 * 120.00262 * 59.71653 * 14 12 11 17 17 C 1.52996 * 109.47352 * 59.99625 * 12 11 10 18 18 C 1.50702 * 109.47258 * 120.00148 * 2 1 3 19 19 O 1.21286 * 120.00082 * 119.99553 * 18 2 1 20 20 N 1.34782 * 120.00030 * 300.00093 * 18 2 1 21 21 C 1.46500 * 119.99443 * 359.97438 * 20 18 2 22 22 C 1.46496 * 119.99761 * 179.97438 * 20 18 2 23 23 C 1.50695 * 109.47214 * 90.00227 * 22 20 18 24 24 H 1.08005 * 120.00303 * 359.97438 * 23 22 20 25 25 C 1.37885 * 120.00050 * 179.97438 * 23 22 20 26 26 N 1.31512 * 119.99594 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99961 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46998 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46944 * 120.00135 * 27 25 23 30 30 H 1.48499 * 109.47054 * 240.00078 * 27 25 23 31 31 H 1.09004 * 109.47017 * 299.99754 * 1 2 3 32 32 H 1.08997 * 109.47319 * 59.99577 * 1 2 3 33 33 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47559 * 179.97438 * 9 7 5 35 35 H 1.08994 * 109.47175 * 299.99970 * 9 7 5 36 36 H 1.08994 * 109.47547 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.46943 * 300.00540 * 10 9 7 38 38 H 1.09001 * 109.47249 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.47038 * 60.00012 * 11 10 9 40 40 H 0.96699 * 116.99771 * 180.27188 * 16 14 12 41 41 H 1.09004 * 109.47066 * 60.00254 * 17 12 11 42 42 H 1.08994 * 109.47405 * 180.02562 * 17 12 11 43 43 H 1.09000 * 109.46768 * 90.00647 * 21 20 18 44 44 H 1.09001 * 109.46485 * 209.99770 * 21 20 18 45 45 H 1.08993 * 109.47471 * 329.99474 * 21 20 18 46 46 H 1.09005 * 109.46473 * 209.99434 * 22 20 18 47 47 H 1.08996 * 109.47156 * 329.99466 * 22 20 18 48 48 H 0.97002 * 119.99349 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2171 0.0640 -2.2811 6 8 1.9974 1.2518 -2.2505 7 6 2.7192 -0.5770 -3.5491 8 1 3.6883 -1.0400 -3.3632 9 6 1.7243 -1.6441 -4.0098 10 6 0.3639 -0.9942 -4.2709 11 6 0.5084 0.0719 -5.3587 12 6 1.5035 1.1390 -4.8981 13 1 1.1402 1.6027 -3.9809 14 6 1.6453 2.1895 -5.9693 15 8 2.7239 2.3971 -6.4728 16 8 0.5724 2.8905 -6.3681 17 6 2.8637 0.4892 -4.6370 18 6 2.0323 -0.7104 1.2304 19 8 2.7295 -1.6966 1.1191 20 7 1.7067 -0.2500 2.4546 21 6 0.8649 0.9414 2.5890 22 6 2.1946 -0.9410 3.6507 23 6 3.5223 -0.3581 4.0611 24 1 3.9592 0.4464 3.4881 25 6 4.1793 -0.8518 5.1683 26 7 3.6470 -1.8310 5.8664 27 14 5.8253 -0.1296 5.6766 28 1 6.2032 0.9535 4.7335 29 1 5.7195 0.4251 7.0501 30 1 6.8615 -1.1930 5.6508 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.0872 -2.1074 -4.9272 35 1 1.6213 -2.4036 -3.2349 36 1 -0.3448 -1.7543 -4.5995 37 1 0.0008 -0.5305 -3.3537 38 1 -0.4606 0.5352 -5.5444 39 1 0.8716 -0.3917 -6.2759 40 1 0.7120 3.5507 -7.0608 41 1 3.2269 0.0255 -5.5542 42 1 3.5725 1.2492 -4.3084 43 1 -0.1832 0.6438 2.6222 44 1 1.1228 1.4666 3.5087 45 1 1.0288 1.6002 1.7363 46 1 1.4765 -0.8153 4.4611 47 1 2.3153 -2.0022 3.4334 48 1 4.1094 -2.1785 6.6450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827817103.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:33 Heat of formation + Delta-G solvation = -245.301438 kcal Electronic energy + Delta-G solvation = -31091.467083 eV Core-core repulsion = 26724.315999 eV Total energy + Delta-G solvation = -4367.151084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.40523 -41.39972 -40.65198 -38.82883 -37.39562 -37.09512 -36.72623 -34.94031 -33.32200 -32.37993 -31.94394 -29.56995 -27.74939 -26.20346 -25.55427 -25.43406 -23.89178 -22.65811 -21.89433 -20.80923 -20.43478 -19.03683 -18.78225 -18.59803 -18.11134 -17.86543 -17.30556 -17.11706 -16.79549 -16.67261 -16.35520 -15.96459 -15.72858 -15.04158 -14.88714 -14.77874 -14.50460 -14.30886 -14.17648 -13.78566 -13.69567 -13.57259 -13.48374 -13.39489 -13.25955 -13.14884 -12.96478 -12.81596 -12.61303 -12.55755 -12.44094 -12.29280 -12.21288 -11.99533 -11.91131 -11.82250 -11.70419 -11.24852 -11.19991 -11.06532 -10.66784 -10.61303 -9.52409 -8.25438 -6.39777 1.05494 1.19811 1.32027 1.35225 1.37605 1.49022 1.62298 2.10728 2.31257 2.43620 3.04644 3.39176 3.44419 3.52171 3.62481 3.76436 3.86412 3.97251 4.00492 4.04374 4.25936 4.32089 4.39875 4.42422 4.53880 4.60305 4.63843 4.67798 4.68876 4.86946 4.88914 4.94346 4.96372 5.04452 5.10364 5.12392 5.19022 5.20079 5.28291 5.29719 5.46482 5.50571 5.61221 5.77080 6.02090 6.53208 6.66457 6.69437 6.98891 7.19917 7.34963 8.82027 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.002460 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.343538 B =11378.600568 C =11663.658732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.111 0.889 4 O -0.339 6.339 5 C 0.465 3.535 6 O -0.524 6.524 7 C -0.077 4.077 8 H 0.127 0.873 9 C -0.113 4.113 10 C -0.122 4.122 11 C -0.103 4.103 12 C -0.096 4.096 13 H 0.119 0.881 14 C 0.492 3.508 15 O -0.551 6.551 16 O -0.511 6.511 17 C -0.084 4.084 18 C 0.499 3.501 19 O -0.579 6.579 20 N -0.600 5.600 21 C 0.068 3.932 22 C 0.260 3.740 23 C -0.546 4.546 24 H 0.050 0.950 25 C 0.010 3.990 26 N -0.925 5.925 27 Si 0.966 3.034 28 H -0.270 1.270 29 H -0.267 1.267 30 H -0.281 1.281 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.426 0.574 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.034 0.966 47 H 0.002 0.998 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 6.548 -24.551 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.129 0.871 4 O -0.254 6.254 5 C 0.310 3.690 6 O -0.414 6.414 7 C -0.096 4.096 8 H 0.144 0.856 9 C -0.150 4.150 10 C -0.159 4.159 11 C -0.141 4.141 12 C -0.114 4.114 13 H 0.136 0.864 14 C 0.336 3.664 15 O -0.442 6.442 16 O -0.324 6.324 17 C -0.121 4.121 18 C 0.286 3.714 19 O -0.459 6.459 20 N -0.332 5.332 21 C -0.074 4.074 22 C 0.139 3.861 23 C -0.584 4.584 24 H 0.069 0.931 25 C -0.189 4.189 26 N -0.565 5.565 27 Si 0.791 3.209 28 H -0.194 1.194 29 H -0.192 1.192 30 H -0.207 1.207 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.288 0.712 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.052 0.948 47 H 0.020 0.980 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.212 6.060 -24.219 27.368 hybrid contribution 1.315 0.828 0.504 1.633 sum -9.897 6.888 -23.715 26.604 Atomic orbital electron populations 1.22397 0.89172 1.04584 1.06107 1.22486 0.97890 0.96507 0.81078 0.87119 1.86633 1.76720 1.42238 1.19840 1.24462 0.73229 0.85725 0.85578 1.90551 1.49309 1.17292 1.84221 1.21300 1.02980 0.97965 0.87354 0.85562 1.21661 0.93764 0.95914 1.03665 1.21625 0.97429 0.98515 0.98368 1.21552 0.98527 0.94612 0.99372 1.21396 0.99204 0.94033 0.96802 0.86367 1.23638 0.80956 0.80428 0.81400 1.90706 1.29688 1.67345 1.56465 1.84506 1.39191 1.51481 1.57226 1.21300 0.95566 0.96913 0.98346 1.20708 0.80641 0.84855 0.85211 1.90664 1.39576 1.28755 1.86889 1.48044 1.50174 1.29520 1.05476 1.22237 0.94784 0.86297 1.04041 1.18845 0.93924 0.91813 0.81528 1.21711 1.05997 1.19215 1.11498 0.93126 1.25819 1.01700 0.95220 0.96191 1.70042 1.40559 1.27069 1.18810 0.85391 0.78847 0.78277 0.78433 1.19432 1.19204 1.20678 0.87240 0.89261 0.91187 0.87376 0.90521 0.88460 0.93194 0.89595 0.89746 0.71239 0.87849 0.92017 0.89504 0.90796 0.89419 0.94828 0.98032 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 9.18 71.98 0.66 -3.01 16 2 C 0.08 2.46 2.18 29.85 0.06 2.52 16 3 H 0.11 3.33 6.41 -2.39 -0.02 3.31 16 4 O -0.34 -10.62 9.32 -45.07 -0.42 -11.04 16 5 C 0.47 12.03 5.72 71.23 0.41 12.43 16 6 O -0.52 -14.70 12.88 21.96 0.28 -14.42 16 7 C -0.08 -1.42 3.11 -11.54 -0.04 -1.45 16 8 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 9 C -0.11 -1.52 5.39 30.60 0.16 -1.36 16 10 C -0.12 -1.48 5.70 30.60 0.17 -1.31 16 11 C -0.10 -1.19 5.13 30.60 0.16 -1.04 16 12 C -0.10 -1.63 2.33 -11.54 -0.03 -1.66 16 13 H 0.12 2.45 5.52 -2.38 -0.01 2.43 16 14 C 0.49 9.10 7.63 71.23 0.54 9.65 16 15 O -0.55 -13.57 16.74 21.94 0.37 -13.20 16 16 O -0.51 -6.61 13.32 -51.41 -0.68 -7.30 16 17 C -0.08 -1.50 3.66 30.59 0.11 -1.39 16 18 C 0.50 21.38 7.15 87.66 0.63 22.01 16 19 O -0.58 -31.05 16.08 15.75 0.25 -30.80 16 20 N -0.60 -25.25 2.86 -851.14 -2.43 -27.68 16 21 C 0.07 1.94 8.80 127.77 1.12 3.07 16 22 C 0.26 13.88 5.16 85.63 0.44 14.32 16 23 C -0.55 -31.51 9.39 25.60 0.24 -31.27 16 24 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 25 C 0.01 0.58 5.46 84.66 0.46 1.04 16 26 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 27 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 30 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 31 H 0.11 2.02 4.53 -2.38 -0.01 2.01 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.77 7.22 -2.39 -0.02 0.75 16 38 H 0.09 0.89 8.11 -2.39 -0.02 0.87 16 39 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.43 1.96 9.10 -74.06 -0.67 1.28 16 41 H 0.10 1.52 8.10 -2.38 -0.02 1.50 16 42 H 0.06 1.36 8.06 -2.39 -0.02 1.34 16 43 H 0.09 1.90 6.95 -2.39 -0.02 1.88 16 44 H 0.07 2.20 8.07 -2.39 -0.02 2.19 16 45 H 0.09 2.01 6.01 -2.39 -0.01 2.00 16 46 H 0.03 1.78 8.07 -2.38 -0.02 1.77 16 47 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 48 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -82.49 388.01 5.11 -77.38 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.32 Total: 12.65 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 5.12 Total: 22.57 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -2.15 Total: -82.93 kcal Atomic # 8 Polarization: -76.55 SS G_CDS: -0.20 Total: -76.75 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -82.49 5.11 -77.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827817103.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.925 kcal (2) G-P(sol) polarization free energy of solvation -82.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds