Wall clock time and date at job start Wed Apr 1 2020 00:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 O 1.45206 * 109.47091 * 240.00090 * 2 1 3 5 5 C 1.34232 * 116.99890 * 89.99666 * 4 2 1 6 6 O 1.20827 * 119.99958 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99568 * 180.02562 * 5 4 2 8 8 H 1.08996 * 109.47347 * 299.99594 * 7 5 4 9 9 C 1.52992 * 109.47536 * 60.00472 * 7 5 4 10 10 C 1.52993 * 109.47590 * 179.97438 * 9 7 5 11 11 C 1.52992 * 109.47019 * 299.99884 * 10 9 7 12 12 C 1.52998 * 109.47404 * 59.99926 * 11 10 9 13 13 H 1.08993 * 109.47723 * 59.99752 * 12 11 10 14 14 C 1.50706 * 109.47493 * 180.02562 * 12 11 10 15 15 O 1.20825 * 119.99911 * 119.99580 * 14 12 11 16 16 O 1.34223 * 120.00017 * 299.99816 * 14 12 11 17 17 C 1.53003 * 109.47105 * 300.00016 * 12 11 10 18 18 C 1.50699 * 109.47389 * 120.00069 * 2 1 3 19 19 O 1.21282 * 120.00041 * 120.00172 * 18 2 1 20 20 N 1.34779 * 120.00033 * 300.00231 * 18 2 1 21 21 C 1.46499 * 119.99713 * 359.97438 * 20 18 2 22 22 C 1.46500 * 120.00165 * 179.97438 * 20 18 2 23 23 C 1.50700 * 109.47101 * 89.99740 * 22 20 18 24 24 H 1.08006 * 120.00021 * 0.02562 * 23 22 20 25 25 C 1.37874 * 120.00213 * 180.02562 * 23 22 20 26 26 N 1.31516 * 119.99754 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00111 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47218 * 60.00180 * 27 25 23 29 29 H 1.48503 * 109.46835 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47200 * 299.99457 * 27 25 23 31 31 H 1.08992 * 109.47056 * 60.00116 * 1 2 3 32 32 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46838 * 299.99496 * 1 2 3 34 34 H 1.09005 * 109.46899 * 300.00067 * 9 7 5 35 35 H 1.08996 * 109.47519 * 59.99227 * 9 7 5 36 36 H 1.09004 * 109.46936 * 59.99522 * 10 9 7 37 37 H 1.08995 * 109.47594 * 179.97438 * 10 9 7 38 38 H 1.09010 * 109.47709 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.47552 * 299.99459 * 11 10 9 40 40 H 0.96693 * 117.00124 * 179.97438 * 16 14 12 41 41 H 1.09004 * 109.46941 * 300.00108 * 17 12 11 42 42 H 1.08995 * 109.47606 * 180.02562 * 17 12 11 43 43 H 1.09008 * 109.46586 * 90.00528 * 21 20 18 44 44 H 1.09002 * 109.47538 * 210.00030 * 21 20 18 45 45 H 1.08998 * 109.47333 * 330.00636 * 21 20 18 46 46 H 1.08993 * 109.46833 * 209.99640 * 22 20 18 47 47 H 1.08999 * 109.46628 * 329.99824 * 22 20 18 48 48 H 0.96998 * 120.00012 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2812 6 8 1.9981 1.2519 -2.2504 7 6 2.7182 -0.5772 -3.5495 8 1 3.6871 -1.0408 -3.3641 9 6 1.7223 -1.6435 -4.0099 10 6 2.2307 -2.2941 -5.2979 11 6 2.3749 -1.2277 -6.3854 12 6 3.3709 -0.1614 -5.9252 13 1 4.3398 -0.6248 -5.7400 14 6 3.5125 0.8895 -6.9961 15 8 3.2354 2.0403 -6.7537 16 8 3.9464 0.5470 -8.2192 17 6 2.8625 0.4893 -4.6371 18 6 2.0324 -0.7104 1.2304 19 8 2.7297 -1.6965 1.1191 20 7 1.7068 -0.2500 2.4546 21 6 0.8650 0.9414 2.5890 22 6 2.1947 -0.9409 3.6507 23 6 3.5225 -0.3580 4.0611 24 1 3.9590 0.4470 3.4884 25 6 4.1800 -0.8522 5.1676 26 7 3.6482 -1.8321 5.8652 27 14 5.8254 -0.1291 5.6767 28 1 5.6602 1.3165 5.9736 29 1 6.3200 -0.8295 6.8891 30 1 6.8037 -0.2991 4.5725 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6192 -2.4031 -3.2349 35 1 0.7534 -1.1800 -4.1953 36 1 3.1997 -2.7577 -5.1128 37 1 1.5214 -3.0541 -5.6256 38 1 2.7376 -1.6911 -7.3030 39 1 1.4060 -0.7641 -6.5706 40 1 4.0207 1.2554 -8.8730 41 1 1.8934 0.9529 -4.8222 42 1 3.5717 1.2493 -4.3094 43 1 -0.1831 0.6437 2.6222 44 1 1.1228 1.4667 3.5086 45 1 1.0287 1.6001 1.7361 46 1 1.4767 -0.8153 4.4611 47 1 2.3155 -2.0022 3.4334 48 1 4.1109 -2.1800 6.6435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827817104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:37 Heat of formation + Delta-G solvation = -226.034582 kcal Electronic energy + Delta-G solvation = -30406.140511 eV Core-core repulsion = 26039.824901 eV Total energy + Delta-G solvation = -4366.315610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21216 -40.58401 -39.15759 -38.08650 -36.48301 -36.33864 -34.95968 -32.97274 -32.25424 -31.45894 -31.19500 -27.68787 -26.27622 -25.09947 -24.92535 -23.97171 -22.41522 -21.78411 -20.79656 -20.04402 -18.89150 -18.40344 -17.97794 -17.11039 -16.54340 -16.44906 -16.20519 -16.14868 -15.63687 -15.32149 -15.08209 -14.66275 -14.45931 -14.15857 -14.06055 -13.72597 -13.46641 -13.17960 -13.05821 -12.91341 -12.65483 -12.42219 -12.19089 -12.10895 -12.02433 -11.82235 -11.67344 -11.59366 -11.38601 -11.19006 -11.17968 -11.14910 -10.94276 -10.91204 -10.67761 -10.57463 -10.56482 -10.31043 -10.18288 -9.68288 -8.91843 -8.45804 -7.74419 -6.07079 -4.12153 1.82316 2.15907 2.34627 2.72400 3.25043 3.31370 3.35404 3.39731 3.83089 4.16176 4.18995 4.32450 4.42652 4.51483 4.60801 4.76329 4.84535 4.87878 4.89685 4.98735 5.00218 5.09189 5.12666 5.20949 5.27479 5.46943 5.52603 5.54066 5.60519 5.64899 5.66018 5.70209 5.80090 5.83510 5.88655 5.95085 5.99015 6.12217 6.21170 6.45435 6.96926 7.37233 7.44807 7.50463 7.72923 7.88843 8.18670 8.27720 8.83025 8.97859 9.52912 11.01001 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.002270 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.557449 B =12330.630616 C =12790.681974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 H 0.105 0.895 4 O -0.323 6.323 5 C 0.465 3.535 6 O -0.507 6.507 7 C -0.077 4.077 8 H 0.115 0.885 9 C -0.116 4.116 10 C -0.116 4.116 11 C -0.113 4.113 12 C -0.078 4.078 13 H 0.114 0.886 14 C 0.482 3.518 15 O -0.509 6.509 16 O -0.517 6.517 17 C -0.091 4.091 18 C 0.509 3.491 19 O -0.520 6.520 20 N -0.596 5.596 21 C 0.076 3.924 22 C 0.247 3.753 23 C -0.530 4.530 24 H 0.057 0.943 25 C 0.062 3.938 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.286 1.286 30 H -0.276 1.276 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.410 0.590 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 2.170 -25.658 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.123 0.877 4 O -0.238 6.238 5 C 0.308 3.692 6 O -0.395 6.395 7 C -0.096 4.096 8 H 0.133 0.867 9 C -0.154 4.154 10 C -0.153 4.153 11 C -0.151 4.151 12 C -0.097 4.097 13 H 0.132 0.868 14 C 0.324 3.676 15 O -0.396 6.396 16 O -0.329 6.329 17 C -0.128 4.128 18 C 0.293 3.707 19 O -0.396 6.396 20 N -0.329 5.329 21 C -0.068 4.068 22 C 0.129 3.871 23 C -0.568 4.568 24 H 0.075 0.925 25 C -0.140 4.140 26 N -0.533 5.533 27 Si 0.727 3.273 28 H -0.202 1.202 29 H -0.211 1.211 30 H -0.201 1.201 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.861 1.874 -25.111 25.854 hybrid contribution 1.001 1.213 0.046 1.574 sum -4.860 3.087 -25.065 25.718 Atomic orbital electron populations 1.22393 0.92473 1.04041 1.04277 1.22617 0.95672 0.97676 0.82971 0.87700 1.86604 1.76355 1.41382 1.19426 1.23619 0.74294 0.85846 0.85484 1.90663 1.47960 1.16578 1.84316 1.21016 1.02159 0.97243 0.89175 0.86712 1.21604 0.97830 0.97485 0.98460 1.21532 1.02558 0.97383 0.93825 1.21596 0.98621 0.95411 0.99449 1.21052 1.03025 0.94151 0.91491 0.86772 1.23452 0.72499 0.89273 0.82358 1.90763 1.45980 1.21690 1.81201 1.84525 1.79212 1.46186 1.22937 1.21329 1.04194 0.96518 0.90766 1.19775 0.81692 0.85391 0.83830 1.90702 1.36946 1.26025 1.85884 1.48064 1.49852 1.28334 1.06694 1.21887 0.93949 0.88044 1.02939 1.19344 0.94353 0.93730 0.79714 1.21386 1.04862 1.19213 1.11372 0.92494 1.24930 0.97985 0.94927 0.96193 1.69919 1.39051 1.25949 1.18370 0.86542 0.83815 0.79057 0.77930 1.20220 1.21120 1.20143 0.91412 0.91009 0.88904 0.89502 0.91090 0.90827 0.90456 0.90138 0.91106 0.73153 0.89773 0.89779 0.93010 0.90313 0.92281 0.94601 0.93642 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.18 37.16 0.34 -1.91 16 2 C 0.07 1.15 2.18 -27.88 -0.06 1.09 16 3 H 0.11 1.72 6.41 -51.93 -0.33 1.38 16 4 O -0.32 -5.28 9.32 -45.91 -0.43 -5.71 16 5 C 0.47 6.56 7.23 36.01 0.26 6.82 16 6 O -0.51 -8.18 15.20 -18.75 -0.28 -8.47 16 7 C -0.08 -0.76 2.63 -91.77 -0.24 -1.00 16 8 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 9 C -0.12 -0.92 5.13 -26.74 -0.14 -1.05 16 10 C -0.12 -0.64 5.92 -26.74 -0.16 -0.80 16 11 C -0.11 -0.63 5.13 -26.74 -0.14 -0.77 16 12 C -0.08 -0.55 2.63 -91.77 -0.24 -0.79 16 13 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 14 C 0.48 4.09 7.63 36.01 0.27 4.36 16 15 O -0.51 -6.21 16.74 -18.75 -0.31 -6.53 16 16 O -0.52 -3.02 13.33 -39.24 -0.52 -3.54 16 17 C -0.09 -0.87 3.06 -26.73 -0.08 -0.95 16 18 C 0.51 10.88 7.15 -10.99 -0.08 10.80 16 19 O -0.52 -13.43 16.08 -14.11 -0.23 -13.65 16 20 N -0.60 -12.60 2.86 -182.95 -0.52 -13.12 16 21 C 0.08 1.17 8.80 59.85 0.53 1.70 16 22 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 23 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 24 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 25 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 26 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 27 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.07 4.53 -51.93 -0.24 0.83 16 34 H 0.09 0.76 8.11 -51.93 -0.42 0.33 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.38 8.11 -51.92 -0.42 -0.05 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.41 0.84 9.10 45.56 0.41 1.26 16 41 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 42 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 43 H 0.05 0.66 6.95 -51.92 -0.36 0.30 16 44 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 45 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 46 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 47 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -37.37 394.52 -7.48 -44.85 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.66 Total: -1.18 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -0.18 Total: 10.22 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.21 Total: -38.80 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.78 Total: -37.90 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.37 -7.48 -44.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827817104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.189 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds