Wall clock time and date at job start Wed Apr 1 2020 00:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 O 1.45206 * 109.47091 * 240.00090 * 2 1 3 5 5 C 1.34232 * 116.99890 * 89.99666 * 4 2 1 6 6 O 1.20827 * 119.99958 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99568 * 180.02562 * 5 4 2 8 8 H 1.08996 * 109.47347 * 299.99594 * 7 5 4 9 9 C 1.52992 * 109.47536 * 60.00472 * 7 5 4 10 10 C 1.52993 * 109.47590 * 179.97438 * 9 7 5 11 11 C 1.52992 * 109.47019 * 299.99884 * 10 9 7 12 12 C 1.52998 * 109.47404 * 59.99926 * 11 10 9 13 13 H 1.08993 * 109.47723 * 59.99752 * 12 11 10 14 14 C 1.50706 * 109.47493 * 180.02562 * 12 11 10 15 15 O 1.20825 * 119.99911 * 119.99580 * 14 12 11 16 16 O 1.34223 * 120.00017 * 299.99816 * 14 12 11 17 17 C 1.53003 * 109.47105 * 300.00016 * 12 11 10 18 18 C 1.50699 * 109.47389 * 120.00069 * 2 1 3 19 19 O 1.21282 * 120.00041 * 120.00172 * 18 2 1 20 20 N 1.34779 * 120.00033 * 300.00231 * 18 2 1 21 21 C 1.46499 * 119.99713 * 359.97438 * 20 18 2 22 22 C 1.46500 * 120.00165 * 179.97438 * 20 18 2 23 23 C 1.50700 * 109.47101 * 89.99740 * 22 20 18 24 24 H 1.08006 * 120.00021 * 0.02562 * 23 22 20 25 25 C 1.37874 * 120.00213 * 180.02562 * 23 22 20 26 26 N 1.31516 * 119.99754 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00111 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47218 * 60.00180 * 27 25 23 29 29 H 1.48503 * 109.46835 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47200 * 299.99457 * 27 25 23 31 31 H 1.08992 * 109.47056 * 60.00116 * 1 2 3 32 32 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46838 * 299.99496 * 1 2 3 34 34 H 1.09005 * 109.46899 * 300.00067 * 9 7 5 35 35 H 1.08996 * 109.47519 * 59.99227 * 9 7 5 36 36 H 1.09004 * 109.46936 * 59.99522 * 10 9 7 37 37 H 1.08995 * 109.47594 * 179.97438 * 10 9 7 38 38 H 1.09010 * 109.47709 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.47552 * 299.99459 * 11 10 9 40 40 H 0.96693 * 117.00124 * 179.97438 * 16 14 12 41 41 H 1.09004 * 109.46941 * 300.00108 * 17 12 11 42 42 H 1.08995 * 109.47606 * 180.02562 * 17 12 11 43 43 H 1.09008 * 109.46586 * 90.00528 * 21 20 18 44 44 H 1.09002 * 109.47538 * 210.00030 * 21 20 18 45 45 H 1.08998 * 109.47333 * 330.00636 * 21 20 18 46 46 H 1.08993 * 109.46833 * 209.99640 * 22 20 18 47 47 H 1.08999 * 109.46628 * 329.99824 * 22 20 18 48 48 H 0.96998 * 120.00012 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2812 6 8 1.9981 1.2519 -2.2504 7 6 2.7182 -0.5772 -3.5495 8 1 3.6871 -1.0408 -3.3641 9 6 1.7223 -1.6435 -4.0099 10 6 2.2307 -2.2941 -5.2979 11 6 2.3749 -1.2277 -6.3854 12 6 3.3709 -0.1614 -5.9252 13 1 4.3398 -0.6248 -5.7400 14 6 3.5125 0.8895 -6.9961 15 8 3.2354 2.0403 -6.7537 16 8 3.9464 0.5470 -8.2192 17 6 2.8625 0.4893 -4.6371 18 6 2.0324 -0.7104 1.2304 19 8 2.7297 -1.6965 1.1191 20 7 1.7068 -0.2500 2.4546 21 6 0.8650 0.9414 2.5890 22 6 2.1947 -0.9409 3.6507 23 6 3.5225 -0.3580 4.0611 24 1 3.9590 0.4470 3.4884 25 6 4.1800 -0.8522 5.1676 26 7 3.6482 -1.8321 5.8652 27 14 5.8254 -0.1291 5.6767 28 1 5.6602 1.3165 5.9736 29 1 6.3200 -0.8295 6.8891 30 1 6.8037 -0.2991 4.5725 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6192 -2.4031 -3.2349 35 1 0.7534 -1.1800 -4.1953 36 1 3.1997 -2.7577 -5.1128 37 1 1.5214 -3.0541 -5.6256 38 1 2.7376 -1.6911 -7.3030 39 1 1.4060 -0.7641 -6.5706 40 1 4.0207 1.2554 -8.8730 41 1 1.8934 0.9529 -4.8222 42 1 3.5717 1.2493 -4.3094 43 1 -0.1831 0.6437 2.6222 44 1 1.1228 1.4667 3.5086 45 1 1.0287 1.6001 1.7361 46 1 1.4767 -0.8153 4.4611 47 1 2.3155 -2.0022 3.4334 48 1 4.1109 -2.1800 6.6435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827817104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:36 Heat of formation + Delta-G solvation = -250.449110 kcal Electronic energy + Delta-G solvation = -30407.199205 eV Core-core repulsion = 26039.824901 eV Total energy + Delta-G solvation = -4367.374304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19824 -41.47955 -40.63952 -38.91060 -37.57675 -37.10440 -36.73686 -34.94049 -33.34631 -32.42000 -31.96093 -29.57262 -27.76360 -26.23811 -25.57303 -25.46394 -23.89920 -22.39259 -21.75740 -20.76314 -20.46025 -19.21618 -18.92158 -18.68263 -18.21407 -17.64775 -17.42895 -17.09240 -16.89524 -16.55902 -16.39555 -15.98301 -15.58934 -15.16061 -14.90800 -14.72533 -14.58262 -14.37526 -14.23996 -14.01167 -13.72097 -13.55974 -13.52238 -13.42683 -13.32544 -13.03690 -12.83244 -12.63103 -12.61209 -12.45824 -12.42838 -12.31501 -12.20675 -11.96273 -11.93040 -11.79882 -11.74232 -11.50770 -11.25586 -11.17323 -10.65832 -10.63121 -9.53427 -8.24772 -6.39386 1.03352 1.18617 1.24934 1.35967 1.39732 1.47029 1.60480 2.08129 2.32187 2.43829 3.05071 3.32499 3.38569 3.57744 3.67366 3.69444 3.83059 3.84312 3.98859 4.10262 4.26946 4.30553 4.34549 4.36254 4.51608 4.57607 4.60502 4.61479 4.66663 4.85478 4.92816 4.94372 4.99699 5.06135 5.08552 5.12475 5.17994 5.22824 5.27274 5.34879 5.43998 5.49596 5.61919 5.76640 6.02194 6.50772 6.63539 6.68857 6.98635 7.18745 7.34441 8.82304 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.002270 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.557449 B =12330.630616 C =12790.681974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.110 0.890 4 O -0.338 6.338 5 C 0.462 3.538 6 O -0.530 6.530 7 C -0.072 4.072 8 H 0.129 0.871 9 C -0.113 4.113 10 C -0.109 4.109 11 C -0.107 4.107 12 C -0.075 4.075 13 H 0.136 0.864 14 C 0.488 3.512 15 O -0.555 6.555 16 O -0.507 6.507 17 C -0.084 4.084 18 C 0.500 3.500 19 O -0.577 6.577 20 N -0.600 5.600 21 C 0.068 3.932 22 C 0.261 3.739 23 C -0.548 4.548 24 H 0.050 0.950 25 C 0.010 3.990 26 N -0.925 5.925 27 Si 0.966 3.034 28 H -0.261 1.261 29 H -0.276 1.276 30 H -0.279 1.279 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.427 0.573 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.034 0.966 47 H 0.002 0.998 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 2.618 -27.355 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 H 0.127 0.873 4 O -0.254 6.254 5 C 0.306 3.694 6 O -0.419 6.419 7 C -0.091 4.091 8 H 0.146 0.854 9 C -0.151 4.151 10 C -0.146 4.146 11 C -0.144 4.144 12 C -0.094 4.094 13 H 0.154 0.846 14 C 0.332 3.668 15 O -0.445 6.445 16 O -0.320 6.320 17 C -0.122 4.122 18 C 0.287 3.713 19 O -0.457 6.457 20 N -0.332 5.332 21 C -0.074 4.074 22 C 0.140 3.860 23 C -0.586 4.586 24 H 0.069 0.931 25 C -0.189 4.189 26 N -0.564 5.564 27 Si 0.790 3.210 28 H -0.186 1.186 29 H -0.201 1.201 30 H -0.205 1.205 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.289 0.711 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.052 0.948 47 H 0.020 0.980 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.963 2.353 -26.842 27.597 hybrid contribution 1.009 1.076 0.525 1.566 sum -4.954 3.429 -26.317 26.998 Atomic orbital electron populations 1.22393 0.89264 1.04617 1.05992 1.22504 0.97880 0.96549 0.81178 0.87258 1.86621 1.76772 1.42150 1.19822 1.24491 0.73428 0.85673 0.85766 1.90643 1.49096 1.17604 1.84606 1.21177 1.03186 0.97673 0.87044 0.85351 1.21623 0.97366 0.96559 0.99548 1.21527 1.03465 0.97412 0.92236 1.21589 0.98007 0.94754 1.00085 1.21080 1.04518 0.94021 0.89804 0.84627 1.23647 0.71358 0.88683 0.83072 1.90756 1.48196 1.23543 1.82051 1.84482 1.78289 1.46863 1.22387 1.21207 1.02891 0.96050 0.92022 1.20632 0.80670 0.84848 0.85126 1.90659 1.39504 1.28660 1.86860 1.48044 1.50156 1.29506 1.05475 1.22235 0.94793 0.86319 1.04027 1.18843 0.93913 0.91817 0.81435 1.21651 1.06032 1.19300 1.11655 0.93123 1.25821 1.01719 0.95219 0.96152 1.70027 1.40641 1.26952 1.18790 0.85496 0.78887 0.79074 0.77534 1.18582 1.20083 1.20456 0.89659 0.91043 0.87116 0.90328 0.91075 0.89774 0.88873 0.88313 0.91420 0.71147 0.91352 0.91895 0.89524 0.90693 0.89554 0.94833 0.97971 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 9.18 71.98 0.66 -3.31 16 2 C 0.08 2.53 2.18 29.85 0.07 2.60 16 3 H 0.11 3.49 6.41 -2.38 -0.02 3.47 16 4 O -0.34 -11.09 9.32 -45.08 -0.42 -11.51 16 5 C 0.46 12.99 7.23 71.24 0.51 13.50 16 6 O -0.53 -17.09 15.20 21.96 0.33 -16.76 16 7 C -0.07 -1.37 2.63 -11.54 -0.03 -1.40 16 8 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 9 C -0.11 -1.63 5.13 30.59 0.16 -1.47 16 10 C -0.11 -0.91 5.92 30.59 0.18 -0.73 16 11 C -0.11 -0.90 5.13 30.59 0.16 -0.74 16 12 C -0.08 -0.93 2.63 -11.54 -0.03 -0.96 16 13 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 14 C 0.49 7.64 7.63 71.24 0.54 8.18 16 15 O -0.55 -13.50 16.74 21.97 0.37 -13.13 16 16 O -0.51 -4.76 13.33 -51.35 -0.68 -5.44 16 17 C -0.08 -1.58 3.06 30.60 0.09 -1.48 16 18 C 0.50 21.82 7.15 87.66 0.63 22.45 16 19 O -0.58 -31.14 16.08 15.76 0.25 -30.88 16 20 N -0.60 -25.61 2.86 -851.13 -2.43 -28.04 16 21 C 0.07 2.00 8.80 127.77 1.12 3.12 16 22 C 0.26 14.01 5.16 85.63 0.44 14.45 16 23 C -0.55 -31.73 9.39 25.60 0.24 -31.49 16 24 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 25 C 0.01 0.60 5.46 84.65 0.46 1.06 16 26 N -0.92 -55.59 13.29 21.45 0.28 -55.30 16 27 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 28 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 30 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.11 2.21 4.53 -2.39 -0.01 2.20 16 34 H 0.08 1.29 8.11 -2.38 -0.02 1.27 16 35 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.55 8.11 -2.38 -0.02 0.53 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.43 0.87 9.10 -74.06 -0.67 0.20 16 41 H 0.07 1.49 8.06 -2.38 -0.02 1.47 16 42 H 0.06 1.44 8.06 -2.39 -0.02 1.42 16 43 H 0.09 1.98 6.95 -2.38 -0.02 1.96 16 44 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 45 H 0.09 2.08 6.01 -2.39 -0.01 2.07 16 46 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 47 H 0.00 0.13 7.42 -2.39 -0.02 0.12 16 48 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -84.85 394.52 5.25 -79.61 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.31 Total: 10.62 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 5.21 Total: 23.77 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.15 Total: -83.34 kcal Atomic # 8 Polarization: -77.58 SS G_CDS: -0.15 Total: -77.73 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -84.85 5.25 -79.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827817104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.843 kcal (2) G-P(sol) polarization free energy of solvation -84.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds