Wall clock time and date at job start Wed Apr 1 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47291 * 2 1 4 4 C 1.46498 * 119.99976 * 269.99914 * 3 2 1 5 5 C 1.50696 * 109.47241 * 269.99668 * 4 3 2 6 6 H 1.07995 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00261 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47164 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47138 * 120.00113 * 9 7 5 12 12 H 1.48501 * 109.47369 * 240.00210 * 9 7 5 13 13 C 1.34775 * 120.00232 * 89.99367 * 3 2 1 14 14 O 1.21283 * 120.00336 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99785 * 0.02562 * 13 3 2 16 16 O 1.45204 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.34221 * 116.99979 * 180.02562 * 16 15 13 18 18 O 1.20827 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99999 * 179.97438 * 17 16 15 20 20 H 1.08998 * 109.47145 * 299.99552 * 19 17 16 21 21 C 1.52998 * 109.47077 * 59.99580 * 19 17 16 22 22 C 1.53004 * 109.46876 * 180.02562 * 21 19 17 23 23 C 1.52992 * 109.47319 * 299.99766 * 22 21 19 24 24 C 1.53004 * 109.47082 * 59.99989 * 23 22 21 25 25 H 1.09006 * 109.47154 * 60.00171 * 24 23 22 26 26 C 1.50696 * 109.47380 * 179.97438 * 24 23 22 27 27 O 1.20833 * 119.99655 * 119.99806 * 26 24 23 28 28 O 1.34222 * 120.00432 * 300.28073 * 26 24 23 29 29 C 1.52996 * 109.47494 * 300.00150 * 24 23 22 30 30 H 1.08993 * 109.47406 * 300.00434 * 1 2 3 31 31 H 1.09004 * 109.47231 * 60.00479 * 1 2 3 32 32 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47709 * 239.99699 * 2 1 3 34 34 H 1.09004 * 109.47231 * 119.99521 * 2 1 3 35 35 H 1.09004 * 109.47037 * 29.99871 * 4 3 2 36 36 H 1.09002 * 109.47127 * 149.99517 * 4 3 2 37 37 H 0.96997 * 119.99730 * 179.97438 * 8 7 5 38 38 H 1.08994 * 109.47340 * 59.99594 * 15 13 3 39 39 H 1.08997 * 109.46933 * 299.99353 * 15 13 3 40 40 H 1.08996 * 109.47009 * 299.99796 * 21 19 17 41 41 H 1.08998 * 109.47126 * 60.00535 * 21 19 17 42 42 H 1.08998 * 109.46846 * 60.00315 * 22 21 19 43 43 H 1.09000 * 109.46887 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.47610 * 300.00082 * 23 22 21 45 45 H 1.08998 * 109.47497 * 179.97438 * 23 22 21 46 46 H 0.96701 * 117.00458 * 179.72178 * 28 26 24 47 47 H 1.08994 * 109.47515 * 179.97438 * 29 24 23 48 48 H 1.09006 * 109.46938 * 300.00154 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9135 2.0967 -3.4167 10 1 6.6012 1.2416 -2.4162 11 1 5.9216 1.4171 -4.7371 12 1 6.6204 3.3982 -3.5256 13 6 2.2428 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9921 1.3061 2.4723 16 8 2.3058 2.1960 3.5759 17 6 2.1355 1.7120 4.8162 18 8 1.7371 0.5824 4.9746 19 6 2.4414 2.5776 6.0114 20 1 3.4898 2.8745 5.9863 21 6 1.5570 3.8257 5.9769 22 6 1.8680 4.7047 7.1899 23 6 1.5915 3.9192 8.4733 24 6 2.4758 2.6711 8.5079 25 1 3.5244 2.9679 8.4823 26 6 2.2040 1.8976 9.7723 27 8 1.8024 0.7597 9.7099 28 8 2.4027 2.4745 10.9678 29 6 2.1650 1.7920 7.2949 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 3.6752 3.5161 -4.4440 38 1 2.6225 0.4188 2.5299 39 1 0.9442 1.0117 2.5301 40 1 1.7543 4.3856 5.0627 41 1 0.5085 3.5288 6.0021 42 1 2.9165 5.0016 7.1642 43 1 1.2383 5.5941 7.1651 44 1 0.5431 3.6224 8.4990 45 1 1.8135 4.5453 9.3375 46 1 2.2106 1.9401 11.7506 47 1 2.7952 0.9031 7.3193 48 1 1.1164 1.4952 7.3205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829693152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:58 Heat of formation + Delta-G solvation = -233.679240 kcal Electronic energy + Delta-G solvation = -30037.440419 eV Core-core repulsion = 25670.793311 eV Total energy + Delta-G solvation = -4366.647108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20025 -40.52273 -39.09311 -38.11706 -36.49894 -36.35593 -35.31322 -32.86357 -32.17416 -31.38301 -30.19111 -29.12907 -26.62818 -24.95792 -24.42270 -23.09003 -22.56401 -21.79978 -20.93059 -20.09348 -18.72910 -18.38136 -17.90875 -17.12792 -16.76869 -16.41898 -16.35062 -16.20404 -15.75095 -15.31717 -15.21392 -14.69635 -14.34381 -14.16402 -14.09311 -13.73260 -13.45978 -13.24878 -12.96390 -12.93129 -12.84818 -12.45938 -12.16801 -12.07645 -11.99958 -11.80822 -11.66844 -11.61550 -11.25542 -11.18789 -11.18210 -10.95037 -10.92443 -10.86582 -10.63462 -10.57741 -10.53008 -10.35932 -10.16367 -9.65999 -9.01066 -8.46693 -7.76857 -6.07586 -4.12350 1.80353 2.11862 2.31206 2.70303 3.23645 3.28365 3.36227 3.40606 3.80877 4.15717 4.18800 4.31860 4.42232 4.51444 4.60593 4.81110 4.86335 4.88109 4.89173 4.97048 5.06810 5.17263 5.20457 5.21491 5.27201 5.36073 5.50640 5.53785 5.57621 5.61134 5.70306 5.72137 5.80486 5.90150 5.95286 5.98902 6.10479 6.17941 6.36786 6.43650 6.98148 7.37816 7.45650 7.48639 7.68478 7.88738 8.18678 8.28162 8.82961 8.97852 9.52769 11.00598 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002130 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.736544 B =13141.744848 C =13645.730630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.326 6.326 17 C 0.464 3.536 18 O -0.508 6.508 19 C -0.076 4.076 20 H 0.114 0.886 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.078 4.078 25 H 0.114 0.886 26 C 0.482 3.518 27 O -0.510 6.510 28 O -0.516 6.516 29 C -0.090 4.090 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.410 0.590 47 H 0.083 0.917 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 -0.984 25.381 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.029 4.029 16 O -0.241 6.241 17 C 0.307 3.693 18 O -0.396 6.396 19 C -0.095 4.095 20 H 0.132 0.868 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.097 4.097 25 H 0.132 0.868 26 C 0.324 3.676 27 O -0.397 6.397 28 O -0.328 6.328 29 C -0.128 4.128 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.269 0.731 47 H 0.102 0.898 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.035 -0.682 24.821 25.336 hybrid contribution 0.806 -0.908 0.046 1.215 sum -4.229 -1.591 24.868 25.275 Atomic orbital electron populations 1.22230 0.96524 1.01710 1.02399 1.21510 0.93761 0.83955 1.03034 1.48212 1.63795 1.13402 1.07155 1.19335 0.96491 0.93707 0.77578 1.21459 0.96848 1.31978 1.06305 0.92349 1.24941 0.97941 0.94892 0.96370 1.69943 1.35613 1.33404 1.14334 0.86427 0.84526 0.78076 0.78303 1.19800 1.20959 1.20834 1.19709 0.79700 0.87149 0.84289 1.90712 1.44547 1.17487 1.86750 1.22975 1.02697 0.92690 0.84500 1.86556 1.78407 1.44857 1.14289 1.23639 0.74251 0.86770 0.84664 1.90677 1.42232 1.20003 1.86697 1.21012 1.03652 0.95342 0.89489 0.86764 1.21627 0.99392 0.94353 1.00197 1.21532 1.02854 0.98112 0.92770 1.21603 0.99461 0.94552 0.99503 1.21048 1.03653 0.96148 0.88838 0.86807 1.23455 0.73365 0.85510 0.85246 1.90764 1.41844 1.19372 1.87703 1.84527 1.81198 1.50163 1.16958 1.21328 1.04789 0.97186 0.89495 0.93143 0.91784 0.91889 0.89411 0.91757 0.94632 0.93696 0.92725 0.88711 0.88791 0.89288 0.91045 0.90856 0.90399 0.91081 0.90132 0.73143 0.89814 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.15 0.38 -1.88 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16 5 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.61 7.75 -10.98 -0.09 10.53 16 14 O -0.52 -13.16 16.08 -14.10 -0.23 -13.38 16 15 C 0.05 0.79 4.50 36.01 0.16 0.95 16 16 O -0.33 -5.24 9.66 -45.88 -0.44 -5.68 16 17 C 0.46 6.30 7.26 36.01 0.26 6.56 16 18 O -0.51 -7.90 15.73 -18.75 -0.30 -8.20 16 19 C -0.08 -0.72 2.63 -91.77 -0.24 -0.96 16 20 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.12 -0.97 5.14 -26.73 -0.14 -1.11 16 22 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 23 C -0.11 -0.63 5.13 -26.73 -0.14 -0.77 16 24 C -0.08 -0.52 2.63 -91.77 -0.24 -0.77 16 25 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 26 C 0.48 3.94 7.63 36.00 0.27 4.21 16 27 O -0.51 -6.04 16.74 -18.76 -0.31 -6.36 16 28 O -0.52 -2.89 13.32 -39.24 -0.52 -3.41 16 29 C -0.09 -0.83 3.07 -26.73 -0.08 -0.91 16 30 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 35 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.09 1.40 7.39 -51.93 -0.38 1.02 16 39 H 0.09 1.33 7.18 -51.93 -0.37 0.96 16 40 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 46 H 0.41 0.74 9.10 45.56 0.41 1.15 16 47 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 48 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -36.83 400.45 -7.84 -44.67 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.88 Total: -1.55 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -0.48 Total: 9.47 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.31 Total: -38.29 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.80 Total: -37.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.83 -7.84 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.008 kcal (2) G-P(sol) polarization free energy of solvation -36.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds