Wall clock time and date at job start Wed Apr 1 2020 01:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47291 * 2 1 4 4 C 1.46498 * 119.99976 * 269.99914 * 3 2 1 5 5 C 1.50696 * 109.47241 * 269.99668 * 4 3 2 6 6 H 1.07995 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00261 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47164 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47138 * 120.00113 * 9 7 5 12 12 H 1.48501 * 109.47369 * 240.00210 * 9 7 5 13 13 C 1.34775 * 120.00232 * 89.99367 * 3 2 1 14 14 O 1.21283 * 120.00336 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99785 * 0.02562 * 13 3 2 16 16 O 1.45204 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.34221 * 116.99979 * 180.02562 * 16 15 13 18 18 O 1.20827 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99999 * 179.97438 * 17 16 15 20 20 H 1.08998 * 109.47145 * 299.99552 * 19 17 16 21 21 C 1.52998 * 109.47077 * 59.99580 * 19 17 16 22 22 C 1.53004 * 109.46876 * 180.02562 * 21 19 17 23 23 C 1.52992 * 109.47319 * 299.99766 * 22 21 19 24 24 C 1.53004 * 109.47082 * 59.99989 * 23 22 21 25 25 H 1.09006 * 109.47154 * 60.00171 * 24 23 22 26 26 C 1.50696 * 109.47380 * 179.97438 * 24 23 22 27 27 O 1.20833 * 119.99655 * 119.99806 * 26 24 23 28 28 O 1.34222 * 120.00432 * 300.28073 * 26 24 23 29 29 C 1.52996 * 109.47494 * 300.00150 * 24 23 22 30 30 H 1.08993 * 109.47406 * 300.00434 * 1 2 3 31 31 H 1.09004 * 109.47231 * 60.00479 * 1 2 3 32 32 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47709 * 239.99699 * 2 1 3 34 34 H 1.09004 * 109.47231 * 119.99521 * 2 1 3 35 35 H 1.09004 * 109.47037 * 29.99871 * 4 3 2 36 36 H 1.09002 * 109.47127 * 149.99517 * 4 3 2 37 37 H 0.96997 * 119.99730 * 179.97438 * 8 7 5 38 38 H 1.08994 * 109.47340 * 59.99594 * 15 13 3 39 39 H 1.08997 * 109.46933 * 299.99353 * 15 13 3 40 40 H 1.08996 * 109.47009 * 299.99796 * 21 19 17 41 41 H 1.08998 * 109.47126 * 60.00535 * 21 19 17 42 42 H 1.08998 * 109.46846 * 60.00315 * 22 21 19 43 43 H 1.09000 * 109.46887 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.47610 * 300.00082 * 23 22 21 45 45 H 1.08998 * 109.47497 * 179.97438 * 23 22 21 46 46 H 0.96701 * 117.00458 * 179.72178 * 28 26 24 47 47 H 1.08994 * 109.47515 * 179.97438 * 29 24 23 48 48 H 1.09006 * 109.46938 * 300.00154 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9135 2.0967 -3.4167 10 1 6.6012 1.2416 -2.4162 11 1 5.9216 1.4171 -4.7371 12 1 6.6204 3.3982 -3.5256 13 6 2.2428 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9921 1.3061 2.4723 16 8 2.3058 2.1960 3.5759 17 6 2.1355 1.7120 4.8162 18 8 1.7371 0.5824 4.9746 19 6 2.4414 2.5776 6.0114 20 1 3.4898 2.8745 5.9863 21 6 1.5570 3.8257 5.9769 22 6 1.8680 4.7047 7.1899 23 6 1.5915 3.9192 8.4733 24 6 2.4758 2.6711 8.5079 25 1 3.5244 2.9679 8.4823 26 6 2.2040 1.8976 9.7723 27 8 1.8024 0.7597 9.7099 28 8 2.4027 2.4745 10.9678 29 6 2.1650 1.7920 7.2949 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 3.6752 3.5161 -4.4440 38 1 2.6225 0.4188 2.5299 39 1 0.9442 1.0117 2.5301 40 1 1.7543 4.3856 5.0627 41 1 0.5085 3.5288 6.0021 42 1 2.9165 5.0016 7.1642 43 1 1.2383 5.5941 7.1651 44 1 0.5431 3.6224 8.4990 45 1 1.8135 4.5453 9.3375 46 1 2.2106 1.9401 11.7506 47 1 2.7952 0.9031 7.3193 48 1 1.1164 1.4952 7.3205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829693152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:57 Heat of formation + Delta-G solvation = -256.994573 kcal Electronic energy + Delta-G solvation = -30038.451447 eV Core-core repulsion = 25670.793311 eV Total energy + Delta-G solvation = -4367.658136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10059 -41.41036 -40.62099 -38.89438 -37.57023 -37.09171 -36.97197 -34.94201 -32.88343 -31.99599 -31.73919 -30.59068 -28.43306 -25.58610 -25.46322 -24.69411 -24.05756 -22.39435 -21.81175 -20.77285 -20.27021 -19.13188 -18.88156 -18.63420 -18.17086 -17.84041 -17.63000 -17.20972 -16.89321 -16.58413 -16.30019 -16.00338 -15.59485 -15.14448 -14.91198 -14.77360 -14.59588 -14.47975 -14.20992 -13.93023 -13.80000 -13.60434 -13.51409 -13.39323 -13.29018 -13.06389 -12.70152 -12.62406 -12.52241 -12.44323 -12.30538 -12.23357 -12.06562 -11.93784 -11.83834 -11.78014 -11.69500 -11.50594 -11.26873 -11.17248 -10.72850 -10.65262 -9.55147 -8.23613 -6.37906 1.04614 1.19773 1.21876 1.37020 1.39216 1.50883 1.61407 2.09219 2.33378 2.45546 3.06446 3.34668 3.43622 3.58718 3.68728 3.76842 3.91051 3.94597 4.00415 4.12847 4.15973 4.28423 4.35010 4.36420 4.36977 4.57056 4.57555 4.61851 4.87150 4.92697 4.93007 4.99531 5.01923 5.07557 5.12698 5.17681 5.21753 5.27264 5.32934 5.34400 5.43731 5.53893 5.63162 5.79172 6.03817 6.52109 6.64411 6.71469 6.99771 7.20604 7.36185 8.84016 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002130 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.736544 B =13141.744848 C =13645.730630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.060 3.940 16 O -0.344 6.344 17 C 0.464 3.536 18 O -0.529 6.529 19 C -0.070 4.070 20 H 0.136 0.864 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.108 4.108 24 C -0.075 4.075 25 H 0.140 0.860 26 C 0.488 3.512 27 O -0.555 6.555 28 O -0.507 6.507 29 C -0.084 4.084 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.029 0.971 36 H 0.001 0.999 37 H 0.268 0.732 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.427 0.573 47 H 0.068 0.932 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -1.481 27.264 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.195 1.195 12 H -0.207 1.207 13 C 0.287 3.713 14 O -0.454 6.454 15 C -0.017 4.017 16 O -0.259 6.259 17 C 0.308 3.692 18 O -0.418 6.418 19 C -0.089 4.089 20 H 0.154 0.846 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.093 4.093 25 H 0.157 0.843 26 C 0.332 3.668 27 O -0.445 6.445 28 O -0.321 6.321 29 C -0.122 4.122 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.288 0.712 47 H 0.087 0.913 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.242 -1.213 26.743 27.105 hybrid contribution 0.501 -0.759 -0.484 1.030 sum -3.741 -1.972 26.259 26.598 Atomic orbital electron populations 1.22171 0.94345 1.03748 1.01845 1.21852 0.95543 0.81077 1.04324 1.48207 1.63618 1.15202 1.05755 1.18797 0.95592 0.91706 0.79721 1.21716 0.97787 1.32083 1.06572 0.92794 1.25855 1.02410 0.94473 0.96422 1.70054 1.37668 1.34126 1.14814 0.85356 0.78991 0.78025 0.78361 1.19179 1.19466 1.20688 1.20506 0.78343 0.86664 0.85751 1.90674 1.47041 1.20005 1.87720 1.22806 1.04497 0.92134 0.82226 1.86574 1.78852 1.45379 1.15111 1.24459 0.73268 0.86981 0.84496 1.90662 1.43333 1.21119 1.86733 1.21168 1.05123 0.95072 0.87526 0.84633 1.21632 0.98843 0.93929 1.01028 1.21520 1.04010 0.97767 0.91290 1.21586 0.98835 0.93996 1.00085 1.21073 1.05406 0.95786 0.87066 0.84285 1.23651 0.72129 0.84800 0.86181 1.90757 1.44094 1.21338 1.88349 1.84484 1.80484 1.50100 1.16998 1.21211 1.03251 0.97184 0.90517 0.92486 0.93582 0.88479 0.89974 0.88595 0.95287 0.98105 0.92352 0.86775 0.86371 0.90684 0.91563 0.89439 0.89299 0.91690 0.88299 0.71153 0.91325 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.31 16 2 C 0.09 2.85 5.93 86.38 0.51 3.37 16 3 N -0.60 -25.19 2.46 -826.15 -2.03 -27.22 16 4 C 0.26 14.06 5.16 85.63 0.44 14.50 16 5 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 9 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 C 0.50 21.29 7.75 87.66 0.68 21.97 16 14 O -0.57 -30.34 16.08 15.76 0.25 -30.09 16 15 C 0.06 1.89 4.50 71.24 0.32 2.21 16 16 O -0.34 -10.92 9.66 -44.98 -0.43 -11.36 16 17 C 0.46 12.29 7.26 71.24 0.52 12.81 16 18 O -0.53 -16.11 15.73 21.96 0.35 -15.76 16 19 C -0.07 -1.25 2.63 -11.54 -0.03 -1.28 16 20 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 21 C -0.12 -1.78 5.14 30.60 0.16 -1.63 16 22 C -0.11 -0.97 5.92 30.59 0.18 -0.78 16 23 C -0.11 -0.91 5.13 30.59 0.16 -0.76 16 24 C -0.07 -0.85 2.63 -11.54 -0.03 -0.88 16 25 H 0.14 0.92 8.14 -2.38 -0.02 0.90 16 26 C 0.49 7.20 7.63 71.23 0.54 7.74 16 27 O -0.55 -12.96 16.74 21.94 0.37 -12.59 16 28 O -0.51 -4.42 13.32 -51.34 -0.68 -5.10 16 29 C -0.08 -1.47 3.07 30.59 0.09 -1.37 16 30 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 31 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.59 8.07 -2.38 -0.02 2.57 16 34 H 0.10 2.32 6.44 -2.38 -0.02 2.30 16 35 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 36 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.11 3.15 7.39 -2.39 -0.02 3.14 16 39 H 0.12 3.14 7.18 -2.39 -0.02 3.12 16 40 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.10 0.55 8.11 -2.39 -0.02 0.53 16 46 H 0.43 0.60 9.10 -74.06 -0.67 -0.07 16 47 H 0.07 1.41 8.06 -2.39 -0.02 1.39 16 48 H 0.06 1.38 8.06 -2.38 -0.02 1.37 16 Total: -1.00 -83.52 400.45 5.41 -78.11 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.30 Total: 10.04 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 4.98 Total: 22.61 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -1.74 Total: -82.61 kcal Atomic # 8 Polarization: -74.75 SS G_CDS: -0.15 Total: -74.90 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -83.52 5.41 -78.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.883 kcal (2) G-P(sol) polarization free energy of solvation -83.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds