Wall clock time and date at job start Wed Apr 1 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 5 5 C 1.50701 * 109.46973 * 89.99870 * 4 3 2 6 6 H 1.08006 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00144 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47050 * 89.99657 * 9 7 5 11 11 H 1.48496 * 109.46861 * 209.99848 * 9 7 5 12 12 H 1.48501 * 109.46932 * 329.99712 * 9 7 5 13 13 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 14 14 O 1.21279 * 119.99753 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00154 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47451 * 179.97438 * 15 13 3 17 17 C 1.34227 * 117.00314 * 179.97438 * 16 15 13 18 18 O 1.20827 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99867 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.47331 * 60.00801 * 19 17 16 21 21 C 1.52997 * 109.47157 * 300.00148 * 19 17 16 22 22 C 1.53003 * 109.47062 * 180.02562 * 21 19 17 23 23 C 1.52996 * 109.47225 * 60.00322 * 22 21 19 24 24 C 1.53006 * 109.46888 * 299.99932 * 23 22 21 25 25 H 1.08990 * 109.47408 * 299.99903 * 24 23 22 26 26 C 1.50703 * 109.46982 * 179.97438 * 24 23 22 27 27 O 1.20822 * 120.00126 * 240.00365 * 26 24 23 28 28 O 1.34229 * 119.99514 * 60.00062 * 26 24 23 29 29 C 1.53001 * 109.46870 * 180.02562 * 19 17 16 30 30 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 35 35 H 1.08992 * 109.46978 * 209.99640 * 4 3 2 36 36 H 1.08993 * 109.47313 * 330.00169 * 4 3 2 37 37 H 0.96999 * 120.00362 * 180.02562 * 8 7 5 38 38 H 1.09001 * 109.47525 * 300.00358 * 15 13 3 39 39 H 1.09002 * 109.47555 * 59.99795 * 15 13 3 40 40 H 1.08998 * 109.47534 * 300.00529 * 21 19 17 41 41 H 1.09006 * 109.47162 * 60.00148 * 21 19 17 42 42 H 1.09004 * 109.46965 * 300.00351 * 22 21 19 43 43 H 1.09001 * 109.46866 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.47671 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.47374 * 59.99636 * 23 22 21 46 46 H 0.96708 * 116.99317 * 180.02562 * 28 26 24 47 47 H 1.08998 * 109.47571 * 300.00495 * 29 19 17 48 48 H 1.09004 * 109.47062 * 60.00377 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 1.0068 2.7823 -1.7037 6 1 0.1157 2.7247 -1.0961 7 6 0.9950 3.5048 -2.8778 8 7 2.0799 3.5745 -3.6180 9 14 -0.5619 4.3849 -3.4175 10 1 -0.5706 5.7616 -2.8607 11 1 -0.6048 4.4503 -4.9004 12 1 -1.7479 3.6424 -2.9202 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 8 2.3074 2.1952 3.5760 17 6 2.1364 1.7115 4.8163 18 8 1.7371 0.5821 4.9746 19 6 2.4424 2.5770 6.0115 20 1 1.8128 3.4665 5.9867 21 6 3.9143 2.9928 5.9766 22 6 4.2251 3.8711 7.1903 23 6 3.9476 3.0849 8.4732 24 6 2.4756 2.6690 8.5081 25 1 1.8461 3.5584 8.4837 26 6 2.2023 1.8941 9.7714 27 8 1.8003 0.7565 9.7073 28 8 2.4058 2.4677 10.9677 29 6 2.1652 1.7911 7.2946 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.0645 2.7984 -1.1383 36 1 2.5506 1.3452 -2.0284 37 1 2.0717 4.0832 -4.4439 38 1 0.9446 1.0113 2.5303 39 1 2.6228 0.4186 2.5299 40 1 4.5439 2.1034 6.0013 41 1 4.1122 3.5526 5.0624 42 1 3.5955 4.7606 7.1659 43 1 5.2737 4.1676 7.1652 44 1 4.1686 3.7106 9.3379 45 1 4.5771 2.1953 8.4976 46 1 2.2169 1.9309 11.7497 47 1 1.1167 1.4944 7.3197 48 1 2.7951 0.9018 7.3192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829693153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:00 Heat of formation + Delta-G solvation = -233.086322 kcal Electronic energy + Delta-G solvation = -30099.900015 eV Core-core repulsion = 25733.278619 eV Total energy + Delta-G solvation = -4366.621397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20153 -40.52241 -39.09482 -38.11833 -36.49943 -36.35582 -35.31171 -32.80945 -32.17360 -31.38323 -30.08728 -29.13020 -26.69685 -24.95620 -24.43545 -22.82846 -22.67715 -21.80024 -20.93307 -20.09384 -18.74742 -18.38524 -17.90219 -17.14925 -16.73220 -16.54603 -16.30653 -16.18897 -15.76414 -15.31761 -15.04668 -14.76637 -14.34539 -14.19043 -14.05084 -13.66525 -13.38341 -13.16864 -13.04133 -12.91011 -12.73794 -12.48350 -12.17252 -12.07513 -11.99667 -11.80955 -11.64631 -11.50940 -11.24042 -11.18609 -11.18252 -11.03280 -10.91671 -10.78754 -10.63384 -10.57823 -10.50408 -10.35335 -10.08826 -9.62469 -9.00840 -8.45234 -7.77302 -6.06643 -4.10894 1.80442 2.11952 2.31266 2.70274 3.23309 3.30000 3.36276 3.38881 3.81617 4.15908 4.18834 4.31927 4.42505 4.51471 4.60642 4.81294 4.87275 4.88224 4.89280 4.97096 5.07072 5.16668 5.20295 5.25260 5.28241 5.39528 5.50624 5.53839 5.61136 5.70033 5.70414 5.78150 5.80518 5.90176 5.95319 6.08384 6.10444 6.26599 6.37287 6.72732 6.98213 7.37625 7.46574 7.48629 7.68608 7.89459 8.19648 8.27968 8.83402 8.98157 9.53784 11.01606 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020123 B = 0.002122 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.142370 B =13189.871921 C =13627.430990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.326 6.326 17 C 0.464 3.536 18 O -0.508 6.508 19 C -0.076 4.076 20 H 0.114 0.886 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.078 4.078 25 H 0.114 0.886 26 C 0.482 3.518 27 O -0.509 6.509 28 O -0.516 6.516 29 C -0.091 4.091 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.410 0.590 47 H 0.083 0.917 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -3.734 25.351 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.029 4.029 16 O -0.241 6.241 17 C 0.307 3.693 18 O -0.396 6.396 19 C -0.095 4.095 20 H 0.132 0.868 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.097 4.097 25 H 0.132 0.868 26 C 0.324 3.676 27 O -0.397 6.397 28 O -0.328 6.328 29 C -0.128 4.128 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.102 0.898 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.976 -3.470 24.785 25.203 hybrid contribution -1.262 -0.175 0.056 1.275 sum 1.714 -3.645 24.841 25.166 Atomic orbital electron populations 1.22244 0.96075 1.01202 1.03449 1.21484 0.94829 0.83445 1.02008 1.48228 1.63874 1.13383 1.07173 1.19353 0.97715 0.92575 0.77483 1.21425 0.97457 1.31188 1.06240 0.92253 1.24936 0.96510 0.96256 0.96429 1.69927 1.27490 1.41542 1.14388 0.86511 0.83188 0.80242 0.77551 1.20548 1.21172 1.19942 1.19692 0.79827 0.87017 0.84277 1.90712 1.45031 1.16985 1.86751 1.22978 1.02888 0.92510 0.84493 1.86556 1.78335 1.44939 1.14290 1.23640 0.74166 0.86857 0.84663 1.90678 1.42248 1.19977 1.86697 1.21011 1.00349 0.98639 0.89485 0.86764 1.21628 0.92762 1.00991 1.00189 1.21533 1.02714 0.98250 0.92770 1.21606 0.92740 1.01274 0.99506 1.21040 1.00433 0.99357 0.88854 0.86799 1.23455 0.73266 0.85626 0.85230 1.90761 1.41904 1.19317 1.87686 1.84532 1.81189 1.50173 1.16956 1.21321 1.04376 0.97613 0.89505 0.90306 0.93363 0.92518 0.92041 0.90145 0.93714 0.94673 0.92702 0.88641 0.88858 0.91047 0.89282 0.90859 0.90398 0.90134 0.91080 0.73146 0.89818 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 1.67 5.98 -4.04 -0.02 1.65 16 3 N -0.59 -12.28 2.46 -175.07 -0.43 -12.71 16 4 C 0.25 6.30 5.20 -5.19 -0.03 6.28 16 5 C -0.52 -14.47 8.92 -34.44 -0.31 -14.78 16 6 H 0.06 1.63 7.42 -52.48 -0.39 1.24 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.51 10.58 7.75 -10.99 -0.09 10.50 16 14 O -0.52 -13.12 16.08 -14.10 -0.23 -13.34 16 15 C 0.05 0.79 4.50 36.00 0.16 0.95 16 16 O -0.33 -5.24 9.66 -45.89 -0.44 -5.68 16 17 C 0.46 6.30 7.26 36.01 0.26 6.56 16 18 O -0.51 -7.91 15.73 -18.75 -0.29 -8.20 16 19 C -0.08 -0.72 2.63 -91.77 -0.24 -0.96 16 20 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.12 -0.97 5.14 -26.73 -0.14 -1.10 16 22 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 23 C -0.11 -0.63 5.14 -26.73 -0.14 -0.77 16 24 C -0.08 -0.53 2.63 -91.79 -0.24 -0.77 16 25 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 26 C 0.48 3.94 7.63 36.01 0.27 4.21 16 27 O -0.51 -6.04 16.74 -18.75 -0.31 -6.36 16 28 O -0.52 -2.89 13.33 -39.25 -0.52 -3.41 16 29 C -0.09 -0.83 3.06 -26.76 -0.08 -0.91 16 30 H 0.08 1.42 7.26 -51.93 -0.38 1.04 16 31 H 0.05 0.72 7.22 -51.93 -0.38 0.35 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 34 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.10 1.43 7.18 -51.93 -0.37 1.06 16 39 H 0.09 1.30 7.39 -51.93 -0.38 0.92 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.41 0.74 9.10 45.56 0.41 1.16 16 47 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 48 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -36.51 398.44 -7.77 -44.27 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.80 Total: -1.15 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -0.46 Total: 9.42 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.31 Total: -38.16 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.80 Total: -36.99 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.51 -7.77 -44.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.812 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds