Wall clock time and date at job start Wed Apr 1 2020 01:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 5 5 C 1.50701 * 109.46973 * 89.99870 * 4 3 2 6 6 H 1.08006 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00144 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47050 * 89.99657 * 9 7 5 11 11 H 1.48496 * 109.46861 * 209.99848 * 9 7 5 12 12 H 1.48501 * 109.46932 * 329.99712 * 9 7 5 13 13 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 14 14 O 1.21279 * 119.99753 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00154 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47451 * 179.97438 * 15 13 3 17 17 C 1.34227 * 117.00314 * 179.97438 * 16 15 13 18 18 O 1.20827 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99867 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.47331 * 60.00801 * 19 17 16 21 21 C 1.52997 * 109.47157 * 300.00148 * 19 17 16 22 22 C 1.53003 * 109.47062 * 180.02562 * 21 19 17 23 23 C 1.52996 * 109.47225 * 60.00322 * 22 21 19 24 24 C 1.53006 * 109.46888 * 299.99932 * 23 22 21 25 25 H 1.08990 * 109.47408 * 299.99903 * 24 23 22 26 26 C 1.50703 * 109.46982 * 179.97438 * 24 23 22 27 27 O 1.20822 * 120.00126 * 240.00365 * 26 24 23 28 28 O 1.34229 * 119.99514 * 60.00062 * 26 24 23 29 29 C 1.53001 * 109.46870 * 180.02562 * 19 17 16 30 30 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 35 35 H 1.08992 * 109.46978 * 209.99640 * 4 3 2 36 36 H 1.08993 * 109.47313 * 330.00169 * 4 3 2 37 37 H 0.96999 * 120.00362 * 180.02562 * 8 7 5 38 38 H 1.09001 * 109.47525 * 300.00358 * 15 13 3 39 39 H 1.09002 * 109.47555 * 59.99795 * 15 13 3 40 40 H 1.08998 * 109.47534 * 300.00529 * 21 19 17 41 41 H 1.09006 * 109.47162 * 60.00148 * 21 19 17 42 42 H 1.09004 * 109.46965 * 300.00351 * 22 21 19 43 43 H 1.09001 * 109.46866 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.47671 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.47374 * 59.99636 * 23 22 21 46 46 H 0.96708 * 116.99317 * 180.02562 * 28 26 24 47 47 H 1.08998 * 109.47571 * 300.00495 * 29 19 17 48 48 H 1.09004 * 109.47062 * 60.00377 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 1.0068 2.7823 -1.7037 6 1 0.1157 2.7247 -1.0961 7 6 0.9950 3.5048 -2.8778 8 7 2.0799 3.5745 -3.6180 9 14 -0.5619 4.3849 -3.4175 10 1 -0.5706 5.7616 -2.8607 11 1 -0.6048 4.4503 -4.9004 12 1 -1.7479 3.6424 -2.9202 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 8 2.3074 2.1952 3.5760 17 6 2.1364 1.7115 4.8163 18 8 1.7371 0.5821 4.9746 19 6 2.4424 2.5770 6.0115 20 1 1.8128 3.4665 5.9867 21 6 3.9143 2.9928 5.9766 22 6 4.2251 3.8711 7.1903 23 6 3.9476 3.0849 8.4732 24 6 2.4756 2.6690 8.5081 25 1 1.8461 3.5584 8.4837 26 6 2.2023 1.8941 9.7714 27 8 1.8003 0.7565 9.7073 28 8 2.4058 2.4677 10.9677 29 6 2.1652 1.7911 7.2946 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.0645 2.7984 -1.1383 36 1 2.5506 1.3452 -2.0284 37 1 2.0717 4.0832 -4.4439 38 1 0.9446 1.0113 2.5303 39 1 2.6228 0.4186 2.5299 40 1 4.5439 2.1034 6.0013 41 1 4.1122 3.5526 5.0624 42 1 3.5955 4.7606 7.1659 43 1 5.2737 4.1676 7.1652 44 1 4.1686 3.7106 9.3379 45 1 4.5771 2.1953 8.4976 46 1 2.2169 1.9309 11.7497 47 1 1.1167 1.4944 7.3197 48 1 2.7951 0.9018 7.3192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829693153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:59 Heat of formation + Delta-G solvation = -256.190574 kcal Electronic energy + Delta-G solvation = -30100.901891 eV Core-core repulsion = 25733.278619 eV Total energy + Delta-G solvation = -4367.623272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09866 -41.41022 -40.61847 -38.89437 -37.56897 -37.09215 -36.97595 -34.88178 -32.88218 -31.99464 -31.65850 -30.60662 -28.49645 -25.58317 -25.45758 -24.51309 -24.14591 -22.39285 -21.81127 -20.77001 -20.27491 -19.11719 -18.87267 -18.73067 -18.12553 -17.78888 -17.65971 -17.21573 -16.87437 -16.54620 -16.21205 -16.01478 -15.66177 -15.08022 -14.87605 -14.72752 -14.58370 -14.47080 -14.15706 -13.96056 -13.80485 -13.68873 -13.51529 -13.38000 -13.28379 -13.00626 -12.73476 -12.62298 -12.55480 -12.44333 -12.30371 -12.23017 -11.95831 -11.93119 -11.82124 -11.75561 -11.63988 -11.50584 -11.26463 -11.17050 -10.71952 -10.62551 -9.55089 -8.21384 -6.34109 1.04933 1.19857 1.22129 1.37350 1.39968 1.49179 1.62036 2.09473 2.34347 2.46265 3.08823 3.35098 3.44637 3.58780 3.68864 3.77217 3.91053 3.96420 4.00521 4.14826 4.16707 4.28521 4.35143 4.37130 4.42353 4.56905 4.57613 4.61902 4.87438 4.92826 4.96296 4.99662 5.03669 5.07684 5.12827 5.19305 5.22913 5.27410 5.33313 5.43810 5.45853 5.57744 5.63115 5.80593 6.06460 6.52661 6.65000 6.74214 6.99735 7.21972 7.38479 8.86209 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020123 B = 0.002122 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.142370 B =13189.871921 C =13627.430990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 N -0.596 5.596 4 C 0.261 3.739 5 C -0.534 4.534 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.963 3.037 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.263 1.263 13 C 0.501 3.499 14 O -0.575 6.575 15 C 0.060 3.940 16 O -0.344 6.344 17 C 0.464 3.536 18 O -0.529 6.529 19 C -0.070 4.070 20 H 0.136 0.864 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.108 4.108 24 C -0.075 4.075 25 H 0.139 0.861 26 C 0.488 3.512 27 O -0.554 6.554 28 O -0.507 6.507 29 C -0.084 4.084 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.001 0.999 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.427 0.573 47 H 0.068 0.932 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 -3.718 27.320 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.328 5.328 4 C 0.140 3.860 5 C -0.573 4.573 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.207 1.207 11 H -0.201 1.201 12 H -0.187 1.187 13 C 0.288 3.712 14 O -0.454 6.454 15 C -0.017 4.017 16 O -0.259 6.259 17 C 0.308 3.692 18 O -0.418 6.418 19 C -0.089 4.089 20 H 0.153 0.847 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.093 4.093 25 H 0.157 0.843 26 C 0.332 3.668 27 O -0.445 6.445 28 O -0.321 6.321 29 C -0.122 4.122 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.019 0.981 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.288 0.712 47 H 0.087 0.913 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.052 -3.492 26.794 27.099 hybrid contribution -0.936 -0.226 -0.491 1.081 sum 1.116 -3.718 26.304 26.588 Atomic orbital electron populations 1.22181 0.95338 1.03088 1.01791 1.21849 0.95413 0.80770 1.04304 1.48216 1.63690 1.15146 1.05764 1.18844 0.95734 0.91781 0.79618 1.21669 0.97845 1.31449 1.06329 0.92594 1.25817 0.99749 0.97022 0.96581 1.70042 1.29505 1.42374 1.14860 0.85475 0.79537 0.78677 0.77492 1.20699 1.20133 1.18723 1.20489 0.78426 0.86550 0.85739 1.90675 1.47457 1.19567 1.87720 1.22812 1.04392 0.92265 0.82232 1.86573 1.78764 1.45478 1.15112 1.24456 0.73149 0.87094 0.84500 1.90663 1.43356 1.21094 1.86736 1.21166 1.01640 0.98550 0.87529 0.84655 1.21633 0.91617 1.01159 1.01018 1.21521 1.03742 0.98035 0.91294 1.21589 0.91514 1.01315 1.00092 1.21066 1.01850 0.99333 0.87082 0.84289 1.23651 0.72041 0.84905 0.86164 1.90754 1.44173 1.21264 1.88332 1.84490 1.80468 1.50123 1.16993 1.21203 1.02976 0.97466 0.90531 0.93619 0.93291 0.88829 0.88093 0.89511 0.98081 0.95241 0.92469 0.86939 0.86187 0.91550 0.90665 0.89453 0.89294 0.88308 0.91683 0.71157 0.91344 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 10.24 71.98 0.74 -4.00 16 2 C 0.10 2.95 5.98 86.38 0.52 3.46 16 3 N -0.60 -24.92 2.46 -826.19 -2.03 -26.95 16 4 C 0.26 13.82 5.20 85.63 0.45 14.27 16 5 C -0.53 -30.20 8.92 25.60 0.23 -29.97 16 6 H 0.06 3.13 7.42 -2.91 -0.02 3.11 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.57 13.29 21.44 0.28 -55.29 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 C 0.50 21.14 7.75 87.65 0.68 21.82 16 14 O -0.57 -30.16 16.08 15.77 0.25 -29.91 16 15 C 0.06 1.86 4.50 71.23 0.32 2.19 16 16 O -0.34 -10.88 9.66 -45.03 -0.43 -11.31 16 17 C 0.46 12.25 7.26 71.24 0.52 12.77 16 18 O -0.53 -16.07 15.73 21.96 0.35 -15.73 16 19 C -0.07 -1.24 2.63 -11.54 -0.03 -1.27 16 20 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 21 C -0.12 -1.77 5.14 30.59 0.16 -1.62 16 22 C -0.11 -0.96 5.92 30.59 0.18 -0.78 16 23 C -0.11 -0.91 5.14 30.60 0.16 -0.75 16 24 C -0.07 -0.85 2.63 -11.55 -0.03 -0.88 16 25 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 26 C 0.49 7.20 7.63 71.24 0.54 7.74 16 27 O -0.55 -12.95 16.74 21.98 0.37 -12.58 16 28 O -0.51 -4.42 13.33 -51.41 -0.69 -5.10 16 29 C -0.08 -1.47 3.06 30.58 0.09 -1.37 16 30 H 0.04 1.61 7.26 -2.39 -0.02 1.59 16 31 H 0.05 1.37 7.22 -2.39 -0.02 1.36 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 34 H 0.09 2.49 7.89 -2.39 -0.02 2.47 16 35 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 36 H 0.03 1.57 7.89 -2.39 -0.02 1.55 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.11 3.15 7.18 -2.39 -0.02 3.13 16 39 H 0.12 3.09 7.39 -2.39 -0.02 3.07 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.38 8.11 -2.38 -0.02 1.36 16 42 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 0.55 8.11 -2.39 -0.02 0.53 16 45 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.43 0.60 9.10 -74.05 -0.67 -0.07 16 47 H 0.07 1.40 8.06 -2.39 -0.02 1.38 16 48 H 0.06 1.38 8.06 -2.38 -0.02 1.36 16 Total: -1.00 -82.98 398.44 5.41 -77.57 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.30 Total: 10.13 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 4.98 Total: 22.48 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.74 Total: -82.24 kcal Atomic # 8 Polarization: -74.48 SS G_CDS: -0.15 Total: -74.63 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -82.98 5.41 -77.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.620 kcal (2) G-P(sol) polarization free energy of solvation -82.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds