Wall clock time and date at job start Wed Apr 1 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47351 * 2 1 4 4 C 1.46500 * 120.00389 * 89.99431 * 3 2 1 5 5 C 1.50695 * 109.47109 * 270.00215 * 4 3 2 6 6 H 1.07995 * 120.00496 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99572 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 C 1.34780 * 119.99868 * 269.99720 * 3 2 1 14 14 O 1.21278 * 120.00148 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99973 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47470 * 179.97438 * 15 13 3 17 17 C 1.34228 * 117.00458 * 179.97438 * 16 15 13 18 18 O 1.20831 * 119.99460 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00326 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.47334 * 300.00000 * 19 17 16 21 21 C 1.52994 * 109.47267 * 59.99670 * 19 17 16 22 22 C 1.53002 * 109.47142 * 60.00221 * 21 19 17 23 23 C 1.53004 * 109.46739 * 59.99702 * 22 21 19 24 24 C 1.52994 * 109.47547 * 300.00050 * 23 22 21 25 25 H 1.09001 * 109.47167 * 300.00640 * 24 23 22 26 26 C 1.50698 * 109.47152 * 180.02562 * 24 23 22 27 27 O 1.20827 * 119.99908 * 239.99745 * 26 24 23 28 28 O 1.34228 * 120.00162 * 60.00463 * 26 24 23 29 29 C 1.53001 * 109.47480 * 180.02562 * 19 17 16 30 30 H 1.09003 * 109.46767 * 60.00346 * 1 2 3 31 31 H 1.08996 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47229 * 300.00213 * 1 2 3 33 33 H 1.09000 * 109.47566 * 239.99371 * 2 1 3 34 34 H 1.09003 * 109.46767 * 119.99654 * 2 1 3 35 35 H 1.09002 * 109.47129 * 150.00048 * 4 3 2 36 36 H 1.08998 * 109.46845 * 30.00855 * 4 3 2 37 37 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 38 38 H 1.09000 * 109.47280 * 300.00229 * 15 13 3 39 39 H 1.09004 * 109.46922 * 59.99684 * 15 13 3 40 40 H 1.09007 * 109.47539 * 179.97438 * 21 19 17 41 41 H 1.09001 * 109.47355 * 300.00519 * 21 19 17 42 42 H 1.08994 * 109.47787 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.47146 * 300.00452 * 22 21 19 44 44 H 1.09001 * 109.47410 * 60.00541 * 23 22 21 45 45 H 1.09010 * 109.46863 * 179.97438 * 23 22 21 46 46 H 0.96696 * 116.99897 * 179.97438 * 28 26 24 47 47 H 1.09003 * 109.46786 * 59.99746 * 29 19 17 48 48 H 1.08998 * 109.47318 * 179.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0066 2.7823 1.7036 6 1 0.1159 2.7255 1.0956 7 6 0.9949 3.5050 2.8777 8 7 2.0797 3.5747 3.6179 9 14 -0.5619 4.3851 3.4173 10 1 -1.6543 3.3948 3.5945 11 1 -0.9546 5.3753 2.3827 12 1 -0.3148 5.0843 4.7038 13 6 2.2431 2.0165 -1.1672 14 8 2.6469 3.1600 -1.1673 15 6 1.9914 1.3062 -2.4723 16 8 2.3055 2.1958 -3.5760 17 6 2.1345 1.7121 -4.8164 18 8 1.7350 0.5828 -4.9746 19 6 2.4406 2.5774 -6.0115 20 1 1.8112 3.4671 -5.9868 21 6 3.9126 2.9931 -5.9766 22 6 4.7961 1.7445 -6.0114 23 6 4.5182 0.9588 -7.2945 24 6 3.0462 0.5431 -7.3295 25 1 2.8248 -0.0828 -6.4650 26 6 2.7728 -0.2313 -8.5930 27 8 1.9551 0.1739 -9.3849 28 8 3.4375 -1.3713 -8.8387 29 6 2.1622 1.7920 -7.2947 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.0644 2.7985 1.1383 36 1 2.5506 1.3453 2.0283 37 1 2.8881 3.1174 3.3379 38 1 2.6211 0.4184 -2.5302 39 1 0.9432 1.0125 -2.5298 40 1 4.1342 3.6187 -6.8413 41 1 4.1105 3.5528 -5.0624 42 1 5.8448 2.0405 -5.9870 43 1 4.5746 1.1184 -5.1469 44 1 4.7396 1.5846 -8.1590 45 1 5.1480 0.0694 -7.3196 46 1 3.2277 -1.8330 -9.6620 47 1 1.1133 1.4963 -7.3193 48 1 2.3832 2.4181 -8.1591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829693154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:02 Heat of formation + Delta-G solvation = -231.685263 kcal Electronic energy + Delta-G solvation = -30794.365650 eV Core-core repulsion = 26427.805008 eV Total energy + Delta-G solvation = -4366.560642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46517 -40.44586 -39.24566 -37.96809 -36.42647 -36.34174 -35.45155 -33.10692 -32.13825 -31.32313 -30.10192 -29.16993 -26.34621 -24.90321 -24.33194 -22.91025 -22.77902 -22.04705 -21.21698 -19.93868 -18.90295 -18.32677 -17.66315 -17.34133 -17.07981 -16.56174 -16.47627 -16.14313 -15.92554 -15.29542 -15.05999 -14.78074 -14.26614 -13.95646 -13.76970 -13.61787 -13.44737 -13.25359 -13.09145 -12.87390 -12.78330 -12.65785 -12.31108 -12.25630 -12.10078 -11.86200 -11.71720 -11.58834 -11.37022 -11.35869 -11.15479 -11.02217 -10.80362 -10.69158 -10.61487 -10.52098 -10.47103 -10.24554 -10.11950 -9.19406 -9.13499 -8.41805 -7.77278 -6.41603 -4.13896 1.89937 2.03226 2.34983 2.70933 3.12551 3.40814 3.45130 3.62015 3.72475 4.15968 4.25360 4.31758 4.50778 4.58447 4.64976 4.74593 4.77287 4.88558 5.01032 5.01766 5.05486 5.14391 5.21737 5.28669 5.29193 5.33401 5.47456 5.56947 5.60186 5.65705 5.68055 5.69499 5.81892 5.87013 5.90299 6.00075 6.17184 6.17527 6.33406 6.64811 6.72495 7.03714 7.27161 7.56984 7.60222 7.98165 8.11233 8.38014 8.71636 8.84004 9.55170 10.95613 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.002340 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.300342 B =11962.173420 C =12256.429667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.589 5.589 4 C 0.238 3.762 5 C -0.605 4.605 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.909 5.909 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.281 1.281 13 C 0.508 3.492 14 O -0.518 6.518 15 C 0.049 3.951 16 O -0.325 6.325 17 C 0.467 3.533 18 O -0.511 6.511 19 C -0.079 4.079 20 H 0.120 0.880 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.095 4.095 25 H 0.134 0.866 26 C 0.487 3.513 27 O -0.519 6.519 28 O -0.516 6.516 29 C -0.087 4.087 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.408 0.592 47 H 0.082 0.918 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.935 -9.173 -22.819 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.323 5.323 4 C 0.119 3.881 5 C -0.643 4.643 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.545 5.545 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.207 1.207 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.239 6.239 17 C 0.310 3.690 18 O -0.400 6.400 19 C -0.098 4.098 20 H 0.138 0.862 21 C -0.154 4.154 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.114 4.114 25 H 0.151 0.849 26 C 0.330 3.670 27 O -0.407 6.407 28 O -0.327 6.327 29 C -0.125 4.125 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.266 0.734 47 H 0.101 0.899 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.279 -7.613 -21.448 22.994 hybrid contribution 0.180 -1.651 -1.715 2.387 sum 3.459 -9.264 -23.163 25.185 Atomic orbital electron populations 1.22238 0.95894 1.01265 1.03549 1.21486 0.95005 0.83198 1.01978 1.48023 1.64034 1.13409 1.06814 1.19402 0.98108 0.92250 0.78381 1.22230 0.97699 1.34848 1.09567 0.92825 1.25795 1.03326 0.95949 0.93357 1.70809 1.02077 1.41966 1.39605 0.83525 0.74055 0.76287 0.76342 1.21452 1.21380 1.20659 1.19705 0.79782 0.87000 0.84287 1.90717 1.44984 1.16956 1.86734 1.22949 1.02948 0.92439 0.84456 1.86574 1.78193 1.44861 1.14302 1.23793 0.73596 0.86908 0.84688 1.90577 1.42803 1.20195 1.86460 1.21143 1.00409 0.98790 0.89421 0.86249 1.21636 0.91007 0.98266 1.04521 1.21612 1.00643 0.96514 0.97357 1.21567 0.93193 1.01057 0.99015 1.21419 0.97993 0.97144 0.94833 0.84853 1.23541 0.77067 0.78611 0.87774 1.90710 1.33338 1.68464 1.48157 1.84551 1.64246 1.37272 1.46669 1.21341 1.00652 0.94639 0.95832 0.93310 0.92427 0.90247 0.91923 0.90269 0.94737 0.95772 0.92234 0.88827 0.88556 0.89869 0.89394 0.90297 0.91779 0.91160 0.90349 0.73366 0.89912 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.11 1.66 5.97 -4.04 -0.02 1.64 16 3 N -0.59 -12.09 2.46 -175.07 -0.43 -12.52 16 4 C 0.24 5.99 4.51 -5.20 -0.02 5.96 16 5 C -0.60 -16.78 8.92 -34.44 -0.31 -17.09 16 6 H 0.05 1.50 7.42 -52.49 -0.39 1.11 16 7 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 8 N -0.91 -27.24 13.65 55.43 0.76 -26.48 16 9 Si 1.07 25.24 29.90 -169.99 -5.08 20.16 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.51 10.45 7.75 -10.98 -0.09 10.37 16 14 O -0.52 -13.03 16.08 -14.10 -0.23 -13.26 16 15 C 0.05 0.77 4.50 36.01 0.16 0.93 16 16 O -0.32 -5.01 9.66 -45.90 -0.44 -5.46 16 17 C 0.47 5.90 5.74 36.00 0.21 6.11 16 18 O -0.51 -7.03 13.41 -18.75 -0.25 -7.29 16 19 C -0.08 -0.73 3.11 -91.78 -0.29 -1.01 16 20 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 21 C -0.12 -0.93 5.39 -26.73 -0.14 -1.08 16 22 C -0.12 -0.97 5.70 -26.73 -0.15 -1.12 16 23 C -0.11 -0.81 5.14 -26.73 -0.14 -0.95 16 24 C -0.10 -0.87 2.33 -91.75 -0.21 -1.08 16 25 H 0.13 1.43 5.52 -51.93 -0.29 1.15 16 26 C 0.49 4.75 7.63 36.00 0.27 5.03 16 27 O -0.52 -6.42 16.74 -18.75 -0.31 -6.73 16 28 O -0.52 -3.82 13.33 -39.25 -0.52 -4.34 16 29 C -0.09 -0.78 3.67 -26.70 -0.10 -0.88 16 30 H 0.05 0.72 7.22 -51.93 -0.37 0.35 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.43 7.26 -51.93 -0.38 1.06 16 33 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 34 H 0.08 1.18 7.89 -51.93 -0.41 0.77 16 35 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 36 H 0.02 0.61 7.76 -51.93 -0.40 0.20 16 37 H 0.27 7.94 7.22 -40.82 -0.29 7.64 16 38 H 0.09 1.23 7.39 -51.93 -0.38 0.85 16 39 H 0.10 1.39 7.18 -51.93 -0.37 1.02 16 40 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.09 0.82 8.11 -51.93 -0.42 0.39 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.61 7.22 -51.93 -0.37 0.23 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.54 8.11 -51.92 -0.42 0.12 16 46 H 0.41 1.30 9.10 45.56 0.41 1.72 16 47 H 0.08 0.84 8.06 -51.93 -0.42 0.43 16 48 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -36.34 390.63 -7.73 -44.07 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.56 Total: 0.86 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.55 Total: 5.10 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.33 Total: -39.00 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.76 Total: -37.07 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.34 -7.73 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.613 kcal (2) G-P(sol) polarization free energy of solvation -36.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds