Wall clock time and date at job start Wed Apr 1 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47351 * 2 1 4 4 C 1.46500 * 120.00389 * 89.99431 * 3 2 1 5 5 C 1.50695 * 109.47109 * 270.00215 * 4 3 2 6 6 H 1.07995 * 120.00496 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99572 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 C 1.34780 * 119.99868 * 269.99720 * 3 2 1 14 14 O 1.21278 * 120.00148 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99973 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47470 * 179.97438 * 15 13 3 17 17 C 1.34228 * 117.00458 * 179.97438 * 16 15 13 18 18 O 1.20831 * 119.99460 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00326 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.47334 * 300.00000 * 19 17 16 21 21 C 1.52994 * 109.47267 * 59.99670 * 19 17 16 22 22 C 1.53002 * 109.47142 * 60.00221 * 21 19 17 23 23 C 1.53004 * 109.46739 * 59.99702 * 22 21 19 24 24 C 1.52994 * 109.47547 * 300.00050 * 23 22 21 25 25 H 1.09001 * 109.47167 * 300.00640 * 24 23 22 26 26 C 1.50698 * 109.47152 * 180.02562 * 24 23 22 27 27 O 1.20827 * 119.99908 * 239.99745 * 26 24 23 28 28 O 1.34228 * 120.00162 * 60.00463 * 26 24 23 29 29 C 1.53001 * 109.47480 * 180.02562 * 19 17 16 30 30 H 1.09003 * 109.46767 * 60.00346 * 1 2 3 31 31 H 1.08996 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47229 * 300.00213 * 1 2 3 33 33 H 1.09000 * 109.47566 * 239.99371 * 2 1 3 34 34 H 1.09003 * 109.46767 * 119.99654 * 2 1 3 35 35 H 1.09002 * 109.47129 * 150.00048 * 4 3 2 36 36 H 1.08998 * 109.46845 * 30.00855 * 4 3 2 37 37 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 38 38 H 1.09000 * 109.47280 * 300.00229 * 15 13 3 39 39 H 1.09004 * 109.46922 * 59.99684 * 15 13 3 40 40 H 1.09007 * 109.47539 * 179.97438 * 21 19 17 41 41 H 1.09001 * 109.47355 * 300.00519 * 21 19 17 42 42 H 1.08994 * 109.47787 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.47146 * 300.00452 * 22 21 19 44 44 H 1.09001 * 109.47410 * 60.00541 * 23 22 21 45 45 H 1.09010 * 109.46863 * 179.97438 * 23 22 21 46 46 H 0.96696 * 116.99897 * 179.97438 * 28 26 24 47 47 H 1.09003 * 109.46786 * 59.99746 * 29 19 17 48 48 H 1.08998 * 109.47318 * 179.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0066 2.7823 1.7036 6 1 0.1159 2.7255 1.0956 7 6 0.9949 3.5050 2.8777 8 7 2.0797 3.5747 3.6179 9 14 -0.5619 4.3851 3.4173 10 1 -1.6543 3.3948 3.5945 11 1 -0.9546 5.3753 2.3827 12 1 -0.3148 5.0843 4.7038 13 6 2.2431 2.0165 -1.1672 14 8 2.6469 3.1600 -1.1673 15 6 1.9914 1.3062 -2.4723 16 8 2.3055 2.1958 -3.5760 17 6 2.1345 1.7121 -4.8164 18 8 1.7350 0.5828 -4.9746 19 6 2.4406 2.5774 -6.0115 20 1 1.8112 3.4671 -5.9868 21 6 3.9126 2.9931 -5.9766 22 6 4.7961 1.7445 -6.0114 23 6 4.5182 0.9588 -7.2945 24 6 3.0462 0.5431 -7.3295 25 1 2.8248 -0.0828 -6.4650 26 6 2.7728 -0.2313 -8.5930 27 8 1.9551 0.1739 -9.3849 28 8 3.4375 -1.3713 -8.8387 29 6 2.1622 1.7920 -7.2947 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.0644 2.7985 1.1383 36 1 2.5506 1.3453 2.0283 37 1 2.8881 3.1174 3.3379 38 1 2.6211 0.4184 -2.5302 39 1 0.9432 1.0125 -2.5298 40 1 4.1342 3.6187 -6.8413 41 1 4.1105 3.5528 -5.0624 42 1 5.8448 2.0405 -5.9870 43 1 4.5746 1.1184 -5.1469 44 1 4.7396 1.5846 -8.1590 45 1 5.1480 0.0694 -7.3196 46 1 3.2277 -1.8330 -9.6620 47 1 1.1133 1.4963 -7.3193 48 1 2.3832 2.4181 -8.1591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829693154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:02 Heat of formation + Delta-G solvation = -254.664527 kcal Electronic energy + Delta-G solvation = -30795.362105 eV Core-core repulsion = 26427.805008 eV Total energy + Delta-G solvation = -4367.557098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.36632 -41.35651 -40.72457 -38.85672 -37.48245 -37.11107 -37.07373 -35.17708 -32.87248 -31.98975 -31.62593 -30.60263 -28.15259 -25.57518 -25.43451 -24.61437 -24.22072 -22.78460 -21.96488 -20.85230 -20.42676 -19.14290 -19.05317 -18.67020 -18.25794 -17.92498 -17.50689 -17.28324 -16.86515 -16.45150 -16.20233 -15.89932 -15.63928 -15.20003 -15.04055 -14.80954 -14.65084 -14.50822 -14.04185 -13.98963 -13.76174 -13.74297 -13.50142 -13.41042 -13.31925 -13.26485 -13.07800 -12.57143 -12.56479 -12.47230 -12.33428 -12.10227 -12.03454 -11.95946 -11.88568 -11.79854 -11.27609 -11.23026 -11.18986 -11.11557 -10.81830 -10.60003 -9.59356 -8.67398 -6.42216 1.02976 1.18560 1.22013 1.48986 1.54248 1.58174 1.77370 2.09670 2.29454 2.54109 3.10947 3.34285 3.44616 3.50280 3.60257 3.81067 3.91157 3.96213 3.99076 4.03548 4.08467 4.24786 4.34297 4.37667 4.40101 4.48486 4.57666 4.65832 4.68625 4.84781 4.85804 4.87339 4.93260 4.95294 5.01509 5.08186 5.15555 5.22147 5.26373 5.39491 5.41136 5.51507 5.60044 5.82293 6.14692 6.45247 6.48683 6.60338 6.97964 7.15341 7.36619 8.68234 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.002340 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.300342 B =11962.173420 C =12256.429667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.609 4.609 6 H 0.048 0.952 7 C -0.031 4.031 8 N -0.933 5.933 9 Si 1.115 2.885 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.062 3.938 16 O -0.345 6.345 17 C 0.466 3.534 18 O -0.522 6.522 19 C -0.075 4.075 20 H 0.134 0.866 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.103 4.103 24 C -0.097 4.097 25 H 0.118 0.882 26 C 0.493 3.507 27 O -0.549 6.549 28 O -0.512 6.512 29 C -0.083 4.083 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.085 0.915 35 H -0.005 1.005 36 H 0.025 0.975 37 H 0.256 0.744 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.426 0.574 47 H 0.067 0.933 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -10.392 -24.812 27.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.126 3.874 5 C -0.648 4.648 6 H 0.066 0.934 7 C -0.230 4.230 8 N -0.570 5.570 9 Si 0.936 3.064 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.288 3.712 14 O -0.455 6.455 15 C -0.015 4.015 16 O -0.260 6.260 17 C 0.311 3.689 18 O -0.412 6.412 19 C -0.094 4.094 20 H 0.152 0.848 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.141 4.141 24 C -0.115 4.115 25 H 0.135 0.865 26 C 0.337 3.663 27 O -0.440 6.440 28 O -0.325 6.325 29 C -0.120 4.120 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.013 0.987 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.288 0.712 47 H 0.086 0.914 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.689 -8.920 -23.474 25.255 hybrid contribution 0.413 -1.376 -1.162 1.848 sum 3.101 -10.296 -24.636 26.880 Atomic orbital electron populations 1.22177 0.95273 1.03175 1.01759 1.21867 0.95494 0.80522 1.04389 1.48052 1.63890 1.15180 1.05396 1.18952 0.95971 0.91722 0.80724 1.22496 0.98214 1.34703 1.09360 0.93352 1.27254 1.05433 0.96489 0.93781 1.70925 1.02425 1.43189 1.40440 0.82961 0.71408 0.75988 0.76034 1.18734 1.20662 1.20581 1.20581 0.78287 0.86526 0.85838 1.90680 1.47476 1.19643 1.87739 1.22774 1.04436 0.92225 0.82052 1.86590 1.78770 1.45493 1.15196 1.24477 0.72904 0.87220 0.84310 1.90573 1.43377 1.20840 1.86377 1.21301 1.01627 0.98678 0.87768 0.84822 1.21663 0.89985 0.98549 1.04986 1.21619 1.01454 0.96161 0.96863 1.21539 0.91842 1.01469 0.99219 1.21409 0.99271 0.96929 0.93927 0.86471 1.23591 0.76450 0.78835 0.87462 1.90702 1.34677 1.69364 1.49231 1.84510 1.63580 1.36500 1.47949 1.21319 0.99776 0.94868 0.96051 0.93240 0.88636 0.93819 0.87709 0.89667 0.98650 0.95753 0.93471 0.85874 0.86932 0.87145 0.90935 0.88899 0.93752 0.89565 0.89835 0.71208 0.91416 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.66 10.24 71.98 0.74 -3.92 16 2 C 0.10 2.88 5.97 86.38 0.52 3.40 16 3 N -0.59 -24.44 2.46 -826.17 -2.03 -26.47 16 4 C 0.25 12.93 4.51 85.63 0.39 13.32 16 5 C -0.61 -34.60 8.92 25.60 0.23 -34.37 16 6 H 0.05 2.74 7.42 -2.91 -0.02 2.72 16 7 C -0.03 -1.81 5.46 84.66 0.46 -1.34 16 8 N -0.93 -57.39 13.65 21.45 0.29 -57.10 16 9 Si 1.11 50.89 29.90 68.60 2.05 52.94 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.50 20.78 7.75 87.66 0.68 21.46 16 14 O -0.58 -30.07 16.08 15.77 0.25 -29.81 16 15 C 0.06 1.84 4.50 71.24 0.32 2.16 16 16 O -0.35 -10.44 9.66 -45.04 -0.43 -10.87 16 17 C 0.47 11.27 5.74 71.23 0.41 11.67 16 18 O -0.52 -13.64 13.41 21.95 0.29 -13.35 16 19 C -0.07 -1.27 3.11 -11.54 -0.04 -1.30 16 20 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 21 C -0.11 -1.62 5.39 30.59 0.16 -1.46 16 22 C -0.12 -1.71 5.70 30.60 0.17 -1.54 16 23 C -0.10 -1.26 5.14 30.59 0.16 -1.11 16 24 C -0.10 -1.60 2.33 -11.52 -0.03 -1.63 16 25 H 0.12 2.38 5.52 -2.39 -0.01 2.37 16 26 C 0.49 8.77 7.63 71.24 0.54 9.32 16 27 O -0.55 -12.86 16.74 21.96 0.37 -12.49 16 28 O -0.51 -6.51 13.33 -51.40 -0.68 -7.20 16 29 C -0.08 -1.34 3.67 30.61 0.11 -1.23 16 30 H 0.05 1.37 7.22 -2.39 -0.02 1.35 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.54 7.26 -2.39 -0.02 1.52 16 33 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 34 H 0.08 2.39 7.89 -2.39 -0.02 2.37 16 35 H 0.00 -0.27 7.29 -2.39 -0.02 -0.29 16 36 H 0.02 1.27 7.76 -2.39 -0.02 1.25 16 37 H 0.26 15.86 7.22 -92.70 -0.67 15.19 16 38 H 0.12 2.91 7.39 -2.39 -0.02 2.90 16 39 H 0.11 3.00 7.18 -2.39 -0.02 2.99 16 40 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 0.79 7.22 -2.38 -0.02 0.77 16 44 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.95 8.11 -2.38 -0.02 0.94 16 46 H 0.43 1.80 9.10 -74.06 -0.67 1.13 16 47 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 48 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -82.25 390.63 5.35 -76.90 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.41 Total: 14.02 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 4.83 Total: 13.42 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -1.74 Total: -83.57 kcal Atomic # 8 Polarization: -73.51 SS G_CDS: -0.20 Total: -73.72 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.94 kcal Total: -82.25 5.35 -76.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.766 kcal (2) G-P(sol) polarization free energy of solvation -82.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds