Wall clock time and date at job start Wed Apr 1 2020 00:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47394 * 2 1 4 4 O 1.45203 * 109.47099 * 239.99897 * 2 1 3 5 5 C 1.34229 * 116.99579 * 90.00179 * 4 2 1 6 6 O 1.20819 * 120.00199 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99505 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46735 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 C 1.50706 * 109.46953 * 60.00071 * 10 9 8 12 12 O 1.20825 * 120.00012 * 240.00112 * 11 10 9 13 13 O 1.34228 * 120.00081 * 59.99802 * 11 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 10 9 16 16 C 1.50698 * 109.46815 * 120.00166 * 2 1 3 17 17 O 1.21286 * 119.99996 * 119.99802 * 16 2 1 18 18 N 1.34778 * 120.00183 * 300.00147 * 16 2 1 19 19 C 1.46505 * 119.99862 * 359.97438 * 18 16 2 20 20 C 1.46495 * 120.00126 * 180.02562 * 18 16 2 21 21 C 1.50707 * 109.47450 * 89.99622 * 20 18 16 22 22 H 1.08002 * 119.99578 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99955 * 180.02562 * 21 20 18 24 24 N 1.31517 * 120.00169 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99886 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47670 * 89.99682 * 25 23 21 27 27 H 1.48502 * 109.47329 * 209.99890 * 25 23 21 28 28 H 1.48507 * 109.47299 * 329.99614 * 25 23 21 29 29 H 1.08991 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47198 * 300.00153 * 1 2 3 31 31 H 1.09003 * 109.46308 * 59.99827 * 1 2 3 32 32 H 1.08992 * 109.47518 * 300.00344 * 7 5 4 33 33 H 1.09002 * 109.47398 * 300.00410 * 8 7 5 34 34 H 1.09001 * 109.47194 * 60.00591 * 8 7 5 35 35 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 37 37 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 38 38 H 0.96692 * 116.99923 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.46935 * 299.99411 * 14 10 9 40 40 H 1.09001 * 109.46812 * 179.97438 * 14 10 9 41 41 H 1.08993 * 109.47194 * 179.97438 * 15 14 10 42 42 H 1.09002 * 109.46695 * 59.99734 * 15 14 10 43 43 H 1.09000 * 109.46270 * 90.00490 * 19 18 16 44 44 H 1.08996 * 109.46959 * 210.00467 * 19 18 16 45 45 H 1.08998 * 109.47067 * 330.00588 * 19 18 16 46 46 H 1.08998 * 109.47154 * 209.99705 * 20 18 16 47 47 H 1.09004 * 109.47180 * 329.99635 * 20 18 16 48 48 H 0.97005 * 120.00210 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7194 -0.5771 -3.5491 8 6 2.8633 0.4890 -4.6371 9 6 3.3725 -0.1619 -5.9247 10 6 2.3775 -1.2291 -6.3848 11 6 1.0374 -0.5891 -6.6415 12 8 0.0668 -0.9487 -6.0181 13 8 0.9220 0.3805 -7.5625 14 6 2.2334 -2.2951 -5.2968 15 6 1.7242 -1.6443 -4.0092 16 6 2.0323 -0.7104 1.2304 17 8 2.7295 -1.6966 1.1192 18 7 1.7067 -0.2501 2.4546 19 6 0.8648 0.9414 2.5890 20 6 2.1954 -0.9404 3.6507 21 6 3.5228 -0.3564 4.0607 22 1 3.9586 0.4488 3.4878 23 6 4.1809 -0.8500 5.1671 24 7 3.6499 -1.8302 5.8651 25 14 5.8259 -0.1257 5.6758 26 1 5.6012 0.9987 6.6194 27 1 6.6439 -1.1727 6.3391 28 1 6.5404 0.3727 4.4731 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 3.6884 -1.0401 -3.3632 33 1 1.8940 0.9517 -4.8230 34 1 3.5720 1.2495 -4.3092 35 1 3.4755 0.5976 -6.6997 36 1 4.3418 -0.6248 -5.7391 37 1 2.7405 -1.6931 -7.3019 38 1 0.0424 0.7605 -7.6920 39 1 3.2027 -2.7581 -5.1112 40 1 1.5242 -3.0552 -5.6245 41 1 1.6212 -2.4038 -3.2343 42 1 0.7550 -1.1813 -4.1949 43 1 -0.1832 0.6438 2.6222 44 1 1.1227 1.4666 3.5086 45 1 1.0287 1.6002 1.7362 46 1 1.4775 -0.8152 4.4613 47 1 2.3168 -2.0016 3.4336 48 1 4.1128 -2.1772 6.6438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833530327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:24 Heat of formation + Delta-G solvation = -220.961665 kcal Electronic energy + Delta-G solvation = -30828.262428 eV Core-core repulsion = 26462.166796 eV Total energy + Delta-G solvation = -4366.095632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39667 -40.56493 -39.07782 -37.91582 -36.47624 -36.20285 -34.94081 -32.95875 -32.25903 -31.29520 -31.11877 -27.67817 -26.27932 -25.70433 -24.34566 -23.26328 -23.08651 -22.15198 -20.57276 -19.95881 -18.85758 -18.31986 -17.81784 -16.89793 -16.59317 -16.52094 -16.50148 -15.92798 -15.74756 -15.36663 -14.85462 -14.59383 -14.47240 -14.06786 -13.87820 -13.74546 -13.42745 -13.07840 -12.96945 -12.68314 -12.60581 -12.43985 -12.36731 -12.17524 -12.07291 -12.05058 -11.63374 -11.50488 -11.38545 -11.33448 -11.14528 -11.06850 -10.92122 -10.66979 -10.57808 -10.55443 -10.36181 -10.24671 -10.17532 -9.65750 -8.89632 -8.45609 -7.72777 -6.06499 -4.11488 1.85514 2.20969 2.51198 2.68223 3.27043 3.29612 3.36199 3.41539 3.87477 4.10431 4.26676 4.35796 4.43379 4.55898 4.67386 4.77769 4.87414 4.89732 5.00726 5.04416 5.06387 5.09932 5.13201 5.28085 5.38631 5.46151 5.48910 5.55364 5.63306 5.67494 5.69502 5.77145 5.80466 5.85046 5.96051 5.97308 6.02501 6.22722 6.29710 6.49797 6.98378 7.38730 7.46326 7.54808 7.77149 7.89669 8.19499 8.29322 8.84440 8.99400 9.53570 11.01621 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.002343 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.160085 B =11946.729972 C =12386.750879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 H 0.105 0.895 4 O -0.322 6.322 5 C 0.466 3.534 6 O -0.513 6.513 7 C -0.080 4.080 8 C -0.109 4.109 9 C -0.110 4.110 10 C -0.083 4.083 11 C 0.482 3.518 12 O -0.507 6.507 13 O -0.518 6.518 14 C -0.102 4.102 15 C -0.128 4.128 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.528 4.528 22 H 0.057 0.943 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.409 0.591 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 4.229 -26.217 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.122 0.878 4 O -0.237 6.237 5 C 0.309 3.691 6 O -0.401 6.401 7 C -0.099 4.099 8 C -0.147 4.147 9 C -0.148 4.148 10 C -0.102 4.102 11 C 0.324 3.676 12 O -0.395 6.395 13 O -0.330 6.330 14 C -0.140 4.140 15 C -0.165 4.165 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.268 0.732 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.496 3.649 -25.806 26.636 hybrid contribution 0.239 0.903 0.414 1.022 sum -5.257 4.552 -25.392 26.327 Atomic orbital electron populations 1.22392 0.92504 1.04091 1.04210 1.22603 0.95674 0.97609 0.83043 0.87776 1.86613 1.76275 1.41403 1.19442 1.23744 0.74027 0.85815 0.85508 1.90625 1.48389 1.16715 1.84396 1.21129 1.01914 0.97667 0.89204 1.21511 1.02924 0.97004 0.93217 1.21581 0.98172 0.97449 0.97553 1.21184 0.90089 0.97236 1.01660 1.23543 0.91780 0.76640 0.75643 1.90686 1.40598 1.61330 1.46866 1.84529 1.40623 1.51043 1.56758 1.21467 1.02850 0.96367 0.93275 1.21816 0.99281 0.97750 0.97686 1.19778 0.81666 0.85384 0.83828 1.90701 1.36953 1.26001 1.85889 1.48060 1.49863 1.28359 1.06689 1.21883 0.93970 0.88047 1.02895 1.19352 0.94355 0.93769 0.79731 1.21425 1.04852 1.19121 1.11328 0.92445 1.24934 0.98001 0.94918 0.96226 1.69933 1.39075 1.25977 1.18307 0.86481 0.83555 0.78694 0.78611 1.20603 1.21026 1.19883 0.90991 0.88926 0.91452 0.86913 0.91330 0.90038 0.89828 0.89611 0.86988 0.73220 0.89711 0.90310 0.89712 0.88998 0.93013 0.90322 0.92307 0.94599 0.93629 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.18 37.16 0.34 -2.07 16 2 C 0.07 1.20 2.18 -27.88 -0.06 1.14 16 3 H 0.10 1.76 6.41 -51.93 -0.33 1.42 16 4 O -0.32 -5.60 9.32 -45.90 -0.43 -6.02 16 5 C 0.47 7.00 7.23 36.01 0.26 7.26 16 6 O -0.51 -8.49 15.20 -18.74 -0.28 -8.77 16 7 C -0.08 -0.87 2.63 -91.77 -0.24 -1.11 16 8 C -0.11 -0.99 4.27 -26.73 -0.11 -1.11 16 9 C -0.11 -0.66 5.39 -26.73 -0.14 -0.80 16 10 C -0.08 -0.51 3.11 -91.77 -0.29 -0.80 16 11 C 0.48 3.94 6.11 36.01 0.22 4.16 16 12 O -0.51 -5.75 14.42 -18.75 -0.27 -6.02 16 13 O -0.52 -3.16 13.33 -39.25 -0.52 -3.69 16 14 C -0.10 -0.73 5.09 -26.73 -0.14 -0.87 16 15 C -0.13 -1.31 4.84 -26.73 -0.13 -1.44 16 16 C 0.51 11.15 7.15 -10.99 -0.08 11.07 16 17 O -0.52 -13.70 16.08 -14.11 -0.23 -13.92 16 18 N -0.60 -12.83 2.86 -182.95 -0.52 -13.35 16 19 C 0.08 1.20 8.80 59.85 0.53 1.73 16 20 C 0.25 6.47 5.16 -5.19 -0.03 6.45 16 21 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 25 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.12 4.53 -51.93 -0.24 0.89 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.72 7.17 -51.93 -0.37 0.35 16 34 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.41 1.06 9.10 45.56 0.41 1.47 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 42 H 0.09 1.10 5.52 -51.93 -0.29 0.82 16 43 H 0.05 0.68 6.95 -51.93 -0.36 0.32 16 44 H 0.08 1.26 8.07 -51.93 -0.42 0.85 16 45 H 0.06 0.80 6.01 -51.93 -0.31 0.49 16 46 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 47 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -37.40 388.01 -7.46 -44.86 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.47 Total: 0.11 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.29 Total: 9.87 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.21 Total: -39.18 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.73 Total: -38.43 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.40 -7.46 -44.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833530327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.103 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds