Wall clock time and date at job start Wed Apr 1 2020 00:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47394 * 2 1 4 4 O 1.45203 * 109.47099 * 239.99897 * 2 1 3 5 5 C 1.34229 * 116.99579 * 90.00179 * 4 2 1 6 6 O 1.20819 * 120.00199 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99505 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46735 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 C 1.50706 * 109.46953 * 60.00071 * 10 9 8 12 12 O 1.20825 * 120.00012 * 240.00112 * 11 10 9 13 13 O 1.34228 * 120.00081 * 59.99802 * 11 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 10 9 16 16 C 1.50698 * 109.46815 * 120.00166 * 2 1 3 17 17 O 1.21286 * 119.99996 * 119.99802 * 16 2 1 18 18 N 1.34778 * 120.00183 * 300.00147 * 16 2 1 19 19 C 1.46505 * 119.99862 * 359.97438 * 18 16 2 20 20 C 1.46495 * 120.00126 * 180.02562 * 18 16 2 21 21 C 1.50707 * 109.47450 * 89.99622 * 20 18 16 22 22 H 1.08002 * 119.99578 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99955 * 180.02562 * 21 20 18 24 24 N 1.31517 * 120.00169 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99886 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47670 * 89.99682 * 25 23 21 27 27 H 1.48502 * 109.47329 * 209.99890 * 25 23 21 28 28 H 1.48507 * 109.47299 * 329.99614 * 25 23 21 29 29 H 1.08991 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47198 * 300.00153 * 1 2 3 31 31 H 1.09003 * 109.46308 * 59.99827 * 1 2 3 32 32 H 1.08992 * 109.47518 * 300.00344 * 7 5 4 33 33 H 1.09002 * 109.47398 * 300.00410 * 8 7 5 34 34 H 1.09001 * 109.47194 * 60.00591 * 8 7 5 35 35 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 37 37 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 38 38 H 0.96692 * 116.99923 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.46935 * 299.99411 * 14 10 9 40 40 H 1.09001 * 109.46812 * 179.97438 * 14 10 9 41 41 H 1.08993 * 109.47194 * 179.97438 * 15 14 10 42 42 H 1.09002 * 109.46695 * 59.99734 * 15 14 10 43 43 H 1.09000 * 109.46270 * 90.00490 * 19 18 16 44 44 H 1.08996 * 109.46959 * 210.00467 * 19 18 16 45 45 H 1.08998 * 109.47067 * 330.00588 * 19 18 16 46 46 H 1.08998 * 109.47154 * 209.99705 * 20 18 16 47 47 H 1.09004 * 109.47180 * 329.99635 * 20 18 16 48 48 H 0.97005 * 120.00210 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7194 -0.5771 -3.5491 8 6 2.8633 0.4890 -4.6371 9 6 3.3725 -0.1619 -5.9247 10 6 2.3775 -1.2291 -6.3848 11 6 1.0374 -0.5891 -6.6415 12 8 0.0668 -0.9487 -6.0181 13 8 0.9220 0.3805 -7.5625 14 6 2.2334 -2.2951 -5.2968 15 6 1.7242 -1.6443 -4.0092 16 6 2.0323 -0.7104 1.2304 17 8 2.7295 -1.6966 1.1192 18 7 1.7067 -0.2501 2.4546 19 6 0.8648 0.9414 2.5890 20 6 2.1954 -0.9404 3.6507 21 6 3.5228 -0.3564 4.0607 22 1 3.9586 0.4488 3.4878 23 6 4.1809 -0.8500 5.1671 24 7 3.6499 -1.8302 5.8651 25 14 5.8259 -0.1257 5.6758 26 1 5.6012 0.9987 6.6194 27 1 6.6439 -1.1727 6.3391 28 1 6.5404 0.3727 4.4731 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 3.6884 -1.0401 -3.3632 33 1 1.8940 0.9517 -4.8230 34 1 3.5720 1.2495 -4.3092 35 1 3.4755 0.5976 -6.6997 36 1 4.3418 -0.6248 -5.7391 37 1 2.7405 -1.6931 -7.3019 38 1 0.0424 0.7605 -7.6920 39 1 3.2027 -2.7581 -5.1112 40 1 1.5242 -3.0552 -5.6245 41 1 1.6212 -2.4038 -3.2343 42 1 0.7550 -1.1813 -4.1949 43 1 -0.1832 0.6438 2.6222 44 1 1.1227 1.4666 3.5086 45 1 1.0287 1.6002 1.7362 46 1 1.4775 -0.8152 4.4613 47 1 2.3168 -2.0016 3.4336 48 1 4.1128 -2.1772 6.6438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833530327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:24 Heat of formation + Delta-G solvation = -245.639524 kcal Electronic energy + Delta-G solvation = -30829.332541 eV Core-core repulsion = 26462.166796 eV Total energy + Delta-G solvation = -4367.165744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28650 -41.58836 -40.62082 -38.71844 -37.60444 -36.96349 -36.75625 -34.95169 -33.37789 -32.45330 -31.77066 -29.59142 -27.79092 -26.59611 -25.85649 -24.55450 -23.75346 -23.40105 -21.59316 -20.64014 -20.47717 -19.13397 -18.82953 -18.67586 -18.19882 -17.56788 -17.37476 -17.17392 -16.85888 -16.81917 -16.44466 -15.96996 -15.42900 -15.11630 -14.97599 -14.71990 -14.45493 -14.40678 -14.25671 -13.87323 -13.67861 -13.58860 -13.48331 -13.34573 -13.23949 -13.09166 -12.95466 -12.84310 -12.67002 -12.61244 -12.46403 -12.23345 -12.21283 -12.05668 -11.95148 -11.81527 -11.73912 -11.26483 -11.21144 -11.01724 -10.66364 -10.65435 -9.55240 -8.25399 -6.40215 1.02277 1.25705 1.29473 1.35593 1.38485 1.48540 1.58185 2.21271 2.30074 2.42027 3.04471 3.35162 3.39142 3.53363 3.65501 3.71781 3.79645 3.88778 4.03045 4.05976 4.25470 4.28708 4.33083 4.47993 4.49081 4.54717 4.55685 4.63417 4.80218 4.83149 4.86333 4.92097 4.94190 5.04411 5.08484 5.14302 5.16589 5.18366 5.24264 5.32262 5.35313 5.48622 5.74836 5.75552 6.01166 6.48702 6.61583 6.68028 7.05071 7.16994 7.33294 8.82026 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.002343 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.160085 B =11946.729972 C =12386.750879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.112 0.888 4 O -0.342 6.342 5 C 0.460 3.540 6 O -0.531 6.531 7 C -0.077 4.077 8 C -0.106 4.106 9 C -0.102 4.102 10 C -0.081 4.081 11 C 0.480 3.520 12 O -0.547 6.547 13 O -0.514 6.514 14 C -0.099 4.099 15 C -0.125 4.125 16 C 0.501 3.499 17 O -0.577 6.577 18 N -0.599 5.599 19 C 0.068 3.932 20 C 0.260 3.740 21 C -0.547 4.547 22 H 0.051 0.949 23 C 0.009 3.991 24 N -0.926 5.926 25 Si 0.968 3.032 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.275 1.275 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.146 0.854 38 H 0.423 0.577 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.034 0.966 47 H 0.001 0.999 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 5.630 -28.032 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 H 0.130 0.870 4 O -0.257 6.257 5 C 0.305 3.695 6 O -0.420 6.420 7 C -0.096 4.096 8 C -0.143 4.143 9 C -0.139 4.139 10 C -0.099 4.099 11 C 0.324 3.676 12 O -0.438 6.438 13 O -0.327 6.327 14 C -0.137 4.137 15 C -0.162 4.162 16 C 0.288 3.712 17 O -0.457 6.457 18 N -0.331 5.331 19 C -0.074 4.074 20 C 0.139 3.861 21 C -0.585 4.585 22 H 0.069 0.931 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.792 3.208 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.200 1.200 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.164 0.836 38 H 0.284 0.716 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.019 0.981 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.733 5.111 -27.645 28.509 hybrid contribution -0.079 0.495 0.958 1.081 sum -4.813 5.605 -26.687 27.691 Atomic orbital electron populations 1.22390 0.89601 1.04418 1.05893 1.22495 0.97658 0.96667 0.81278 0.87029 1.86633 1.76733 1.42372 1.19980 1.24673 0.73302 0.85762 0.85783 1.90599 1.49303 1.17500 1.84626 1.21350 1.02437 0.98300 0.87515 1.21522 1.02047 0.96535 0.94234 1.21595 0.98806 0.97658 0.95855 1.21297 0.89055 0.96930 1.02635 1.24021 0.92105 0.76401 0.75049 1.90681 1.42097 1.62666 1.48356 1.84498 1.41861 1.50410 1.55904 1.21483 1.03792 0.96544 0.91833 1.21755 0.98385 0.97092 0.98995 1.20605 0.80672 0.84837 0.85114 1.90658 1.39553 1.28633 1.86862 1.48045 1.50125 1.29543 1.05430 1.22239 0.94742 0.86306 1.04110 1.18861 0.94018 0.91810 0.81397 1.21671 1.05970 1.19248 1.11660 0.93056 1.25845 1.01821 0.95188 0.96142 1.70042 1.40721 1.27000 1.18753 0.85407 0.78641 0.78395 0.78314 1.18684 1.20425 1.19976 0.91398 0.86833 0.90045 0.85262 0.93171 0.90394 0.88436 0.87267 0.83620 0.71623 0.87450 0.90449 0.91287 0.91056 0.89639 0.90502 0.89526 0.94809 0.98064 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.38 9.18 71.98 0.66 -3.72 16 2 C 0.08 2.67 2.18 29.85 0.07 2.73 16 3 H 0.11 3.67 6.41 -2.39 -0.02 3.66 16 4 O -0.34 -12.07 9.32 -45.05 -0.42 -12.49 16 5 C 0.46 13.84 7.23 71.24 0.51 14.35 16 6 O -0.53 -17.44 15.20 21.99 0.33 -17.11 16 7 C -0.08 -1.62 2.63 -11.54 -0.03 -1.65 16 8 C -0.11 -1.78 4.27 30.59 0.13 -1.65 16 9 C -0.10 -0.90 5.39 30.59 0.16 -0.73 16 10 C -0.08 -0.77 3.11 -11.54 -0.04 -0.81 16 11 C 0.48 7.17 6.11 71.24 0.44 7.61 16 12 O -0.55 -12.36 14.42 21.97 0.32 -12.04 16 13 O -0.51 -5.33 13.33 -51.40 -0.68 -6.02 16 14 C -0.10 -1.24 5.09 30.60 0.16 -1.08 16 15 C -0.12 -2.52 4.84 30.59 0.15 -2.38 16 16 C 0.50 22.49 7.15 87.66 0.63 23.12 16 17 O -0.58 -31.93 16.08 15.75 0.25 -31.68 16 18 N -0.60 -26.13 2.86 -851.12 -2.43 -28.56 16 19 C 0.07 2.04 8.80 127.77 1.12 3.16 16 20 C 0.26 14.15 5.16 85.64 0.44 14.59 16 21 C -0.55 -31.88 9.39 25.60 0.24 -31.64 16 22 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 23 C 0.01 0.54 5.46 84.65 0.46 1.01 16 24 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 25 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.11 2.46 4.53 -2.39 -0.01 2.45 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 1.03 7.17 -2.39 -0.02 1.01 16 34 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 35 H 0.10 0.66 8.11 -2.39 -0.02 0.64 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.42 1.64 9.10 -74.06 -0.67 0.97 16 39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.07 1.57 8.11 -2.39 -0.02 1.56 16 42 H 0.07 1.77 5.52 -2.39 -0.01 1.75 16 43 H 0.09 2.03 6.95 -2.39 -0.02 2.01 16 44 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 45 H 0.09 2.14 6.01 -2.39 -0.01 2.13 16 46 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 47 H 0.00 0.08 7.42 -2.38 -0.02 0.06 16 48 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -85.36 388.01 5.10 -80.26 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.32 Total: 13.25 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 5.11 Total: 22.91 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.15 Total: -84.25 kcal Atomic # 8 Polarization: -79.13 SS G_CDS: -0.20 Total: -79.33 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -85.36 5.10 -80.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833530327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.382 kcal (2) G-P(sol) polarization free energy of solvation -85.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds