Wall clock time and date at job start Wed Apr 1 2020 00:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47085 * 2 1 4 4 O 1.45205 * 109.47045 * 119.99842 * 2 1 3 5 5 C 1.34230 * 117.00108 * 270.00326 * 4 2 1 6 6 O 1.20825 * 119.99931 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99757 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.47005 * 299.99553 * 7 5 4 9 9 C 1.53005 * 109.47160 * 300.00007 * 8 7 5 10 10 C 1.52995 * 109.47273 * 300.00258 * 9 8 7 11 11 C 1.50707 * 109.47334 * 179.97438 * 10 9 8 12 12 O 1.20823 * 119.99833 * 240.00165 * 11 10 9 13 13 O 1.34228 * 119.99601 * 59.99740 * 11 10 9 14 14 C 1.53006 * 109.47139 * 59.99861 * 10 9 8 15 15 C 1.52999 * 109.46776 * 299.99720 * 14 10 9 16 16 C 1.50698 * 109.47229 * 240.00083 * 2 1 3 17 17 O 1.21280 * 120.00012 * 248.57430 * 16 2 1 18 18 N 1.34776 * 120.00108 * 68.56602 * 16 2 1 19 19 C 1.46501 * 120.00035 * 4.58849 * 18 16 2 20 20 C 1.46504 * 119.99904 * 184.58672 * 18 16 2 21 21 C 1.50696 * 109.47028 * 90.00197 * 20 18 16 22 22 H 1.08001 * 120.00250 * 359.97438 * 21 20 18 23 23 C 1.37876 * 119.99732 * 179.97438 * 21 20 18 24 24 N 1.31510 * 120.00484 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46901 * 60.00032 * 25 23 21 27 27 H 1.48495 * 109.47244 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46957 * 300.00176 * 25 23 21 29 29 H 1.09008 * 109.47185 * 307.15952 * 1 2 3 30 30 H 1.09003 * 109.47298 * 67.15147 * 1 2 3 31 31 H 1.08991 * 109.47208 * 187.15600 * 1 2 3 32 32 H 1.08995 * 109.47615 * 59.99755 * 7 5 4 33 33 H 1.08994 * 109.47490 * 60.00559 * 8 7 5 34 34 H 1.09002 * 109.46983 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47081 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.46780 * 60.00094 * 9 8 7 37 37 H 1.08997 * 109.47084 * 299.99650 * 10 9 8 38 38 H 0.96696 * 116.99455 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47017 * 180.02562 * 14 10 9 40 40 H 1.08998 * 109.46866 * 60.00223 * 14 10 9 41 41 H 1.08997 * 109.47370 * 300.00164 * 15 14 10 42 42 H 1.09003 * 109.46706 * 179.97438 * 15 14 10 43 43 H 1.08993 * 109.47367 * 86.11552 * 19 18 16 44 44 H 1.08997 * 109.46907 * 206.11846 * 19 18 16 45 45 H 1.09003 * 109.46997 * 326.11529 * 19 18 16 46 46 H 1.08996 * 109.46697 * 210.00135 * 20 18 16 47 47 H 1.08997 * 109.46945 * 329.99754 * 20 18 16 48 48 H 0.97004 * 120.00792 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2812 6 8 1.9981 1.2519 2.2504 7 6 2.7192 -0.5771 3.5492 8 6 1.7243 -1.6441 4.0098 9 6 0.3639 -0.9942 4.2710 10 6 0.5084 0.0719 5.3588 11 6 -0.8313 0.7125 5.6155 12 8 -0.9752 1.9003 5.4475 13 8 -1.8648 -0.0367 6.0309 14 6 1.5035 1.1390 4.8981 15 6 2.8637 0.4891 4.6371 16 6 2.0324 -0.7104 -1.2304 17 8 2.5962 -1.7790 -1.1260 18 7 1.8549 -0.1582 -2.4470 19 6 1.2645 1.1773 -2.5663 20 6 2.2523 -0.8935 -3.6502 21 6 1.0934 -1.7248 -4.1367 22 1 0.1547 -1.7075 -3.6028 23 6 1.2313 -2.5075 -5.2634 24 7 2.3744 -2.5290 -5.9132 25 14 -0.2051 -3.5385 -5.8661 26 1 -1.3525 -2.6510 -6.1840 27 1 0.1973 -4.2828 -7.0864 28 1 -0.6024 -4.5008 -4.8072 29 1 -0.3634 0.6208 0.8191 30 1 -0.3634 0.3990 -0.9470 31 1 -0.3633 -1.0196 0.1280 32 1 3.6883 -1.0400 3.3633 33 1 1.6213 -2.4036 3.2349 34 1 2.0873 -2.1075 4.9272 35 1 -0.3448 -1.7544 4.5996 36 1 0.0008 -0.5306 3.3538 37 1 0.8716 -0.3918 6.2759 38 1 -2.7041 0.4189 6.1827 39 1 1.6067 1.8983 5.6733 40 1 1.1402 1.6027 3.9809 41 1 3.2269 0.0254 5.5542 42 1 3.5725 1.2493 4.3084 43 1 2.0472 1.9301 -2.4733 44 1 0.7801 1.2749 -3.5378 45 1 0.5270 1.3203 -1.7765 46 1 2.5446 -0.1875 -4.4275 47 1 3.0941 -1.5453 -3.4162 48 1 2.4714 -3.0793 -6.7061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833530332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:27 Heat of formation + Delta-G solvation = -220.873459 kcal Electronic energy + Delta-G solvation = -31180.286257 eV Core-core repulsion = 26814.194450 eV Total energy + Delta-G solvation = -4366.091807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38908 -40.50252 -39.21238 -37.87178 -36.42499 -36.22244 -34.92112 -32.92947 -32.25545 -31.41116 -31.06766 -27.74962 -26.20581 -25.68254 -24.41270 -23.30848 -22.99043 -22.04142 -20.86181 -19.82307 -18.84398 -18.32115 -17.55473 -17.10903 -16.74468 -16.57000 -16.25615 -16.04919 -15.70931 -15.18916 -15.00087 -14.64714 -14.40587 -14.24616 -13.98340 -13.65079 -13.27920 -13.08843 -12.90839 -12.78462 -12.61192 -12.53229 -12.29448 -12.14522 -12.07768 -11.85261 -11.69323 -11.55448 -11.34428 -11.31322 -11.20688 -11.10796 -10.91275 -10.69042 -10.59783 -10.56201 -10.47038 -10.19532 -10.09986 -9.68945 -8.91925 -8.46751 -7.73385 -6.07770 -4.13310 1.89666 2.15333 2.48223 2.71943 3.22950 3.29956 3.34530 3.38111 3.86845 4.16090 4.26152 4.39747 4.42171 4.55385 4.63400 4.77503 4.86079 4.94537 4.99050 5.04660 5.08309 5.10840 5.12411 5.26711 5.38488 5.45363 5.46746 5.58328 5.66161 5.69043 5.71383 5.77004 5.83098 5.85998 5.91704 6.04288 6.10141 6.20454 6.26718 6.53628 6.97778 7.38185 7.45157 7.58291 7.73893 7.88052 8.17851 8.28241 8.82196 8.97298 9.51833 11.00307 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002561 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.233617 B =10930.311034 C =11332.110431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.103 0.897 4 O -0.323 6.323 5 C 0.463 3.537 6 O -0.505 6.505 7 C -0.084 4.084 8 C -0.111 4.111 9 C -0.117 4.117 10 C -0.079 4.079 11 C 0.481 3.519 12 O -0.511 6.511 13 O -0.517 6.517 14 C -0.122 4.122 15 C -0.101 4.101 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.596 5.596 19 C 0.067 3.933 20 C 0.246 3.754 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.409 0.591 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.046 0.954 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 6.424 24.226 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.238 6.238 5 C 0.306 3.694 6 O -0.394 6.394 7 C -0.103 4.103 8 C -0.148 4.148 9 C -0.155 4.155 10 C -0.098 4.098 11 C 0.323 3.677 12 O -0.398 6.398 13 O -0.329 6.329 14 C -0.159 4.159 15 C -0.138 4.138 16 C 0.294 3.706 17 O -0.397 6.397 18 N -0.330 5.330 19 C -0.077 4.077 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.267 0.733 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.889 6.246 23.920 24.890 hybrid contribution -1.468 -0.021 -0.435 1.531 sum -4.357 6.225 23.485 24.684 Atomic orbital electron populations 1.22295 0.92386 1.04058 1.04001 1.22616 0.95824 0.97417 0.82958 0.87973 1.86636 1.76265 1.41451 1.19470 1.23766 0.74164 0.85925 0.85526 1.90590 1.48176 1.16649 1.83945 1.21174 1.01676 0.97748 0.89678 1.21566 0.93128 0.96960 1.03141 1.21617 0.98623 0.97379 0.97856 1.21155 0.88967 0.98000 1.01664 1.23596 0.86531 0.85298 0.72312 1.90736 1.84188 1.17089 1.47824 1.84542 1.22929 1.46102 1.79337 1.21761 0.93336 0.96418 1.04371 1.21446 0.97833 0.97349 0.97165 1.19772 0.80874 0.86137 0.83833 1.90693 1.41717 1.21491 1.85783 1.48066 1.60768 1.17243 1.06882 1.21975 0.97882 0.84205 1.03591 1.19356 0.96777 0.91629 0.79494 1.21386 0.98413 1.26465 1.10649 0.92411 1.24934 0.96092 0.96574 0.96415 1.69919 1.24111 1.40245 1.18978 0.86544 0.82285 0.80389 0.78127 1.20218 1.21136 1.20121 0.91433 0.88999 0.90678 0.86681 0.89191 0.89710 0.89662 0.91458 0.87239 0.73267 0.90886 0.88143 0.90201 0.90207 0.93424 0.90131 0.91694 0.94656 0.93598 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.14 37.16 0.34 -2.07 16 2 C 0.07 1.17 2.16 -27.88 -0.06 1.11 16 3 H 0.10 1.58 6.73 -51.93 -0.35 1.23 16 4 O -0.32 -5.19 9.33 -45.86 -0.43 -5.61 16 5 C 0.46 6.14 5.71 36.00 0.21 6.35 16 6 O -0.51 -7.44 12.88 -18.75 -0.24 -7.68 16 7 C -0.08 -0.76 3.11 -91.77 -0.29 -1.05 16 8 C -0.11 -0.84 5.39 -26.73 -0.14 -0.98 16 9 C -0.12 -0.96 4.92 -26.73 -0.13 -1.10 16 10 C -0.08 -0.62 2.63 -91.77 -0.24 -0.87 16 11 C 0.48 4.60 7.63 36.01 0.27 4.87 16 12 O -0.51 -6.64 16.74 -18.75 -0.31 -6.95 16 13 O -0.52 -3.67 13.33 -39.25 -0.52 -4.19 16 14 C -0.12 -1.13 4.20 -26.73 -0.11 -1.24 16 15 C -0.10 -0.77 5.09 -26.73 -0.14 -0.91 16 16 C 0.51 10.88 7.03 -10.99 -0.08 10.80 16 17 O -0.52 -13.40 16.08 -13.95 -0.22 -13.63 16 18 N -0.60 -12.67 2.86 -182.96 -0.52 -13.19 16 19 C 0.07 1.06 9.80 59.85 0.59 1.65 16 20 C 0.25 6.41 5.18 -5.19 -0.03 6.38 16 21 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 22 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 25 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 30 H 0.09 1.24 5.46 -51.93 -0.28 0.96 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 36 H 0.07 0.70 7.22 -51.93 -0.37 0.33 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.41 1.34 9.10 45.56 0.41 1.75 16 39 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.10 1.26 5.48 -51.93 -0.28 0.98 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 45 H 0.06 0.86 4.31 -51.93 -0.22 0.64 16 46 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 47 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -36.76 389.50 -7.41 -44.17 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.51 Total: 0.84 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -0.23 Total: 9.43 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.21 Total: -38.81 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.73 Total: -38.06 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.76 -7.41 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833530332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.704 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds