Wall clock time and date at job start Wed Apr 1 2020 00:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47085 * 2 1 4 4 O 1.45205 * 109.47045 * 119.99842 * 2 1 3 5 5 C 1.34230 * 117.00108 * 270.00326 * 4 2 1 6 6 O 1.20825 * 119.99931 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99757 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.47005 * 299.99553 * 7 5 4 9 9 C 1.53005 * 109.47160 * 300.00007 * 8 7 5 10 10 C 1.52995 * 109.47273 * 300.00258 * 9 8 7 11 11 C 1.50707 * 109.47334 * 179.97438 * 10 9 8 12 12 O 1.20823 * 119.99833 * 240.00165 * 11 10 9 13 13 O 1.34228 * 119.99601 * 59.99740 * 11 10 9 14 14 C 1.53006 * 109.47139 * 59.99861 * 10 9 8 15 15 C 1.52999 * 109.46776 * 299.99720 * 14 10 9 16 16 C 1.50698 * 109.47229 * 240.00083 * 2 1 3 17 17 O 1.21280 * 120.00012 * 248.57430 * 16 2 1 18 18 N 1.34776 * 120.00108 * 68.56602 * 16 2 1 19 19 C 1.46501 * 120.00035 * 4.58849 * 18 16 2 20 20 C 1.46504 * 119.99904 * 184.58672 * 18 16 2 21 21 C 1.50696 * 109.47028 * 90.00197 * 20 18 16 22 22 H 1.08001 * 120.00250 * 359.97438 * 21 20 18 23 23 C 1.37876 * 119.99732 * 179.97438 * 21 20 18 24 24 N 1.31510 * 120.00484 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46901 * 60.00032 * 25 23 21 27 27 H 1.48495 * 109.47244 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46957 * 300.00176 * 25 23 21 29 29 H 1.09008 * 109.47185 * 307.15952 * 1 2 3 30 30 H 1.09003 * 109.47298 * 67.15147 * 1 2 3 31 31 H 1.08991 * 109.47208 * 187.15600 * 1 2 3 32 32 H 1.08995 * 109.47615 * 59.99755 * 7 5 4 33 33 H 1.08994 * 109.47490 * 60.00559 * 8 7 5 34 34 H 1.09002 * 109.46983 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47081 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.46780 * 60.00094 * 9 8 7 37 37 H 1.08997 * 109.47084 * 299.99650 * 10 9 8 38 38 H 0.96696 * 116.99455 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47017 * 180.02562 * 14 10 9 40 40 H 1.08998 * 109.46866 * 60.00223 * 14 10 9 41 41 H 1.08997 * 109.47370 * 300.00164 * 15 14 10 42 42 H 1.09003 * 109.46706 * 179.97438 * 15 14 10 43 43 H 1.08993 * 109.47367 * 86.11552 * 19 18 16 44 44 H 1.08997 * 109.46907 * 206.11846 * 19 18 16 45 45 H 1.09003 * 109.46997 * 326.11529 * 19 18 16 46 46 H 1.08996 * 109.46697 * 210.00135 * 20 18 16 47 47 H 1.08997 * 109.46945 * 329.99754 * 20 18 16 48 48 H 0.97004 * 120.00792 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2812 6 8 1.9981 1.2519 2.2504 7 6 2.7192 -0.5771 3.5492 8 6 1.7243 -1.6441 4.0098 9 6 0.3639 -0.9942 4.2710 10 6 0.5084 0.0719 5.3588 11 6 -0.8313 0.7125 5.6155 12 8 -0.9752 1.9003 5.4475 13 8 -1.8648 -0.0367 6.0309 14 6 1.5035 1.1390 4.8981 15 6 2.8637 0.4891 4.6371 16 6 2.0324 -0.7104 -1.2304 17 8 2.5962 -1.7790 -1.1260 18 7 1.8549 -0.1582 -2.4470 19 6 1.2645 1.1773 -2.5663 20 6 2.2523 -0.8935 -3.6502 21 6 1.0934 -1.7248 -4.1367 22 1 0.1547 -1.7075 -3.6028 23 6 1.2313 -2.5075 -5.2634 24 7 2.3744 -2.5290 -5.9132 25 14 -0.2051 -3.5385 -5.8661 26 1 -1.3525 -2.6510 -6.1840 27 1 0.1973 -4.2828 -7.0864 28 1 -0.6024 -4.5008 -4.8072 29 1 -0.3634 0.6208 0.8191 30 1 -0.3634 0.3990 -0.9470 31 1 -0.3633 -1.0196 0.1280 32 1 3.6883 -1.0400 3.3633 33 1 1.6213 -2.4036 3.2349 34 1 2.0873 -2.1075 4.9272 35 1 -0.3448 -1.7544 4.5996 36 1 0.0008 -0.5306 3.3538 37 1 0.8716 -0.3918 6.2759 38 1 -2.7041 0.4189 6.1827 39 1 1.6067 1.8983 5.6733 40 1 1.1402 1.6027 3.9809 41 1 3.2269 0.0254 5.5542 42 1 3.5725 1.2493 4.3084 43 1 2.0472 1.9301 -2.4733 44 1 0.7801 1.2749 -3.5378 45 1 0.5270 1.3203 -1.7765 46 1 2.5446 -0.1875 -4.4275 47 1 3.0941 -1.5453 -3.4162 48 1 2.4714 -3.0793 -6.7061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833530332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:26 Heat of formation + Delta-G solvation = -244.964448 kcal Electronic energy + Delta-G solvation = -31181.330920 eV Core-core repulsion = 26814.194450 eV Total energy + Delta-G solvation = -4367.136471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.33533 -41.40639 -40.67504 -38.81850 -37.37879 -37.09086 -36.71379 -34.89935 -33.35835 -32.46930 -31.74553 -29.66222 -27.69893 -26.58026 -25.87611 -24.65159 -23.67798 -23.26712 -21.63240 -20.73934 -20.42137 -19.01873 -18.70260 -18.63232 -18.08403 -17.77404 -17.37140 -17.31218 -16.87806 -16.53016 -16.34592 -15.94844 -15.78901 -15.09863 -14.87269 -14.72265 -14.60644 -14.28951 -14.12790 -13.77770 -13.64963 -13.63724 -13.47407 -13.34733 -13.22642 -13.09518 -13.04908 -12.85253 -12.60447 -12.56253 -12.41402 -12.26950 -12.19763 -12.10135 -11.86299 -11.77066 -11.72794 -11.25182 -11.16451 -11.01962 -10.64923 -10.63203 -9.53855 -8.23605 -6.38830 1.12781 1.19018 1.34042 1.38210 1.42060 1.49138 1.58319 2.13934 2.32606 2.44487 3.06508 3.36926 3.45494 3.55775 3.68048 3.75376 3.80947 3.89644 3.99137 4.08526 4.20809 4.32779 4.37684 4.49257 4.50895 4.53641 4.56576 4.61337 4.80612 4.82334 4.87987 4.92986 4.94971 5.07019 5.09484 5.16387 5.18249 5.20702 5.27126 5.30246 5.49530 5.57012 5.64966 5.77119 6.02187 6.53281 6.69780 6.70403 6.98645 7.18271 7.34780 8.83868 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002561 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.233617 B =10930.311034 C =11332.110431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.081 3.919 3 H 0.116 0.884 4 O -0.342 6.342 5 C 0.457 3.543 6 O -0.522 6.522 7 C -0.083 4.083 8 C -0.106 4.106 9 C -0.115 4.115 10 C -0.075 4.075 11 C 0.482 3.518 12 O -0.554 6.554 13 O -0.511 6.511 14 C -0.121 4.121 15 C -0.094 4.094 16 C 0.502 3.498 17 O -0.576 6.576 18 N -0.600 5.600 19 C 0.061 3.939 20 C 0.259 3.741 21 C -0.546 4.546 22 H 0.058 0.942 23 C 0.009 3.991 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.259 1.259 27 H -0.279 1.279 28 H -0.276 1.276 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.037 0.963 37 H 0.146 0.854 38 H 0.425 0.575 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.119 0.881 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.029 0.971 47 H 0.001 0.999 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 6.180 26.384 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.133 0.867 4 O -0.257 6.257 5 C 0.302 3.698 6 O -0.411 6.411 7 C -0.102 4.102 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.093 4.093 11 C 0.326 3.674 12 O -0.445 6.445 13 O -0.324 6.324 14 C -0.158 4.158 15 C -0.131 4.131 16 C 0.289 3.711 17 O -0.456 6.456 18 N -0.333 5.333 19 C -0.080 4.080 20 C 0.138 3.862 21 C -0.585 4.585 22 H 0.076 0.924 23 C -0.191 4.191 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.184 1.184 27 H -0.204 1.204 28 H -0.201 1.201 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.056 0.944 37 H 0.164 0.836 38 H 0.286 0.714 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.137 0.863 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.047 0.953 47 H 0.019 0.981 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.196 6.044 26.098 27.116 hybrid contribution -1.062 0.102 -1.059 1.503 sum -5.258 6.146 25.039 26.313 Atomic orbital electron populations 1.22260 0.90409 1.04096 1.05135 1.22412 0.97035 0.96872 0.81413 0.86681 1.86660 1.76771 1.42412 1.19905 1.24769 0.73428 0.85881 0.85739 1.90589 1.48940 1.17507 1.84094 1.21442 1.02580 0.98499 0.87638 1.21605 0.92337 0.95980 1.04388 1.21597 0.99347 0.97586 0.96696 1.21209 0.87855 0.97319 1.02948 1.23951 0.87412 0.84770 0.71224 1.90725 1.84935 1.18963 1.49870 1.84506 1.23500 1.45804 1.78569 1.21674 0.94570 0.96994 1.02593 1.21483 0.96671 0.96827 0.98119 1.20626 0.79758 0.85671 0.85089 1.90651 1.44126 1.24080 1.86750 1.48052 1.60682 1.18798 1.05732 1.22276 0.99233 0.81741 1.04779 1.18860 0.95041 0.91159 0.81113 1.21668 0.98746 1.27100 1.10960 0.92400 1.25870 0.98941 0.97702 0.96538 1.70043 1.26205 1.41071 1.19452 0.85447 0.79100 0.78663 0.77499 1.18391 1.20431 1.20139 0.89568 0.88214 0.91443 0.85111 0.90584 0.85850 0.88305 0.94378 0.83624 0.71393 0.90910 0.91855 0.86274 0.91094 0.91018 0.90148 0.88740 0.95278 0.98126 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 9.14 71.98 0.66 -3.79 16 2 C 0.08 2.68 2.16 29.85 0.06 2.74 16 3 H 0.12 3.48 6.73 -2.39 -0.02 3.46 16 4 O -0.34 -11.03 9.33 -45.10 -0.42 -11.45 16 5 C 0.46 11.90 5.71 71.24 0.41 12.31 16 6 O -0.52 -15.29 12.88 21.97 0.28 -15.01 16 7 C -0.08 -1.33 3.11 -11.54 -0.04 -1.37 16 8 C -0.11 -1.32 5.39 30.59 0.16 -1.16 16 9 C -0.11 -1.64 4.92 30.59 0.15 -1.49 16 10 C -0.07 -1.00 2.63 -11.54 -0.03 -1.03 16 11 C 0.48 8.51 7.63 71.24 0.54 9.05 16 12 O -0.55 -14.25 16.74 21.97 0.37 -13.88 16 13 O -0.51 -6.14 13.33 -51.40 -0.68 -6.83 16 14 C -0.12 -2.07 4.20 30.60 0.13 -1.94 16 15 C -0.09 -1.20 5.09 30.60 0.16 -1.04 16 16 C 0.50 22.00 7.03 87.66 0.62 22.62 16 17 O -0.58 -31.08 16.08 15.62 0.25 -30.83 16 18 N -0.60 -26.02 2.86 -851.15 -2.43 -28.45 16 19 C 0.06 1.88 9.80 127.77 1.25 3.13 16 20 C 0.26 14.05 5.18 85.63 0.44 14.49 16 21 C -0.55 -31.22 9.39 25.60 0.24 -30.98 16 22 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 23 C 0.01 0.50 5.46 84.66 0.46 0.96 16 24 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 25 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 29 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.10 2.54 5.46 -2.39 -0.01 2.53 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.21 8.11 -2.39 -0.02 1.19 16 34 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 1.15 8.11 -2.39 -0.02 1.13 16 36 H 0.04 0.77 7.22 -2.39 -0.02 0.75 16 37 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.42 2.01 9.10 -74.06 -0.67 1.34 16 39 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 40 H 0.06 1.59 5.48 -2.39 -0.01 1.58 16 41 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.49 8.04 -2.39 -0.02 2.47 16 45 H 0.09 2.34 4.31 -2.39 -0.01 2.33 16 46 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 47 H 0.00 0.04 7.36 -2.39 -0.02 0.02 16 48 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -84.49 389.50 5.21 -79.28 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.31 Total: 13.95 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 5.22 Total: 22.52 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.15 Total: -84.11 kcal Atomic # 8 Polarization: -77.80 SS G_CDS: -0.20 Total: -78.00 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -84.49 5.21 -79.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833530332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.685 kcal (2) G-P(sol) polarization free energy of solvation -84.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds