Wall clock time and date at job start Wed Apr 1 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45208 * 109.46899 * 2 1 4 4 C 1.34231 * 116.99780 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00251 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99527 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.46575 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47552 * 54.48864 * 7 6 4 9 9 C 1.50707 * 109.46833 * 174.48306 * 7 6 4 10 10 H 1.08005 * 119.99720 * 95.00365 * 9 7 6 11 11 C 1.37880 * 120.00036 * 275.00037 * 9 7 6 12 12 N 1.31513 * 119.99797 * 185.01740 * 11 9 7 13 13 Si 1.86800 * 119.99992 * 5.02726 * 11 9 7 14 14 H 1.48497 * 109.47438 * 84.82300 * 13 11 9 15 15 H 1.48504 * 109.46757 * 204.82704 * 13 11 9 16 16 H 1.48495 * 109.46921 * 324.82078 * 13 11 9 17 17 O 1.45193 * 109.47777 * 294.48305 * 7 6 4 18 18 C 1.34229 * 117.00414 * 150.00222 * 17 7 6 19 19 O 1.20833 * 119.99722 * 359.97438 * 18 17 7 20 20 C 1.50696 * 120.00370 * 180.02562 * 18 17 7 21 21 H 1.08992 * 109.49732 * 300.06421 * 20 18 17 22 22 C 1.53037 * 109.50077 * 179.97438 * 20 18 17 23 23 C 1.53037 * 109.54343 * 178.68263 * 22 20 18 24 24 C 1.53195 * 109.31113 * 61.36185 * 23 22 20 25 25 N 1.46920 * 108.77892 * 305.36892 * 24 23 22 26 26 C 1.34776 * 120.63391 * 233.58299 * 25 24 23 27 27 C 1.50693 * 119.99676 * 0.02562 * 26 25 24 28 28 O 1.21278 * 120.00052 * 179.97438 * 26 25 24 29 29 C 1.46933 * 118.73525 * 53.60806 * 25 24 23 30 30 H 1.08998 * 109.47413 * 299.99906 * 1 2 3 31 31 H 1.08997 * 109.47270 * 59.99786 * 1 2 3 32 32 H 1.09009 * 109.47010 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47413 * 240.00094 * 2 1 3 34 34 H 1.08997 * 109.47270 * 120.00214 * 2 1 3 35 35 H 1.08997 * 109.47183 * 299.99766 * 6 4 3 36 36 H 1.09002 * 109.47189 * 60.00239 * 6 4 3 37 37 H 0.96998 * 119.99935 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.46146 * 298.70458 * 22 20 18 39 39 H 1.08999 * 109.45830 * 58.67214 * 22 20 18 40 40 H 1.09000 * 109.50345 * 181.31639 * 23 22 20 41 41 H 1.09003 * 109.49730 * 301.38472 * 23 22 20 42 42 H 1.09001 * 109.58711 * 65.15709 * 24 23 22 43 43 H 1.08997 * 109.58911 * 185.58182 * 24 23 22 44 44 H 1.08993 * 109.47774 * 89.99696 * 27 26 25 45 45 H 1.09012 * 109.46902 * 209.99494 * 27 26 25 46 46 H 1.09003 * 109.47300 * 329.98814 * 27 26 25 47 47 H 1.09010 * 109.58561 * 186.60523 * 29 25 24 48 48 H 1.08994 * 109.59019 * 66.18213 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9376 0.0012 7 6 5.4484 2.8575 0.0023 8 1 5.7807 2.2425 -0.8340 9 6 6.0242 4.2436 -0.1337 10 1 6.3098 4.7986 0.7478 11 6 6.1863 4.8033 -1.3833 12 7 6.7787 5.9706 -1.5091 13 14 5.5642 3.9035 -2.8975 14 1 4.1253 4.2101 -3.0993 15 1 6.3359 4.3444 -4.0872 16 1 5.7370 2.4406 -2.7098 17 8 5.9012 2.2655 1.2484 18 6 7.0459 1.5655 1.2100 19 8 7.6493 1.4508 0.1694 20 6 7.5778 0.9216 2.4643 21 1 7.7626 1.6884 3.2166 22 6 8.8843 0.1899 2.1485 23 6 9.4425 -0.4366 3.4282 24 6 8.4372 -1.4559 3.9735 25 7 7.1369 -0.7933 4.1434 26 6 6.4931 -0.8373 5.3267 27 6 7.1068 -1.5706 6.4914 28 8 5.4205 -0.2859 5.4543 29 6 6.5514 -0.0823 2.9986 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.5850 3.4700 -0.8888 36 1 3.5843 3.4695 0.8912 37 1 6.8925 6.3645 -2.3882 38 1 8.6938 -0.5927 1.4141 39 1 9.6085 0.8977 1.7451 40 1 10.3849 -0.9377 3.2070 41 1 9.6106 0.3427 4.1716 42 1 8.3369 -2.2825 3.2701 43 1 8.7839 -1.8323 4.9359 44 1 7.7318 -0.8852 7.0638 45 1 6.3160 -1.9620 7.1317 46 1 7.7161 -2.3952 6.1214 47 1 5.6539 0.4477 3.3178 48 1 6.2974 -0.7968 2.2157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870619480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:35 Heat of formation + Delta-G solvation = -217.448845 kcal Electronic energy + Delta-G solvation = -31527.995900 eV Core-core repulsion = 27162.052596 eV Total energy + Delta-G solvation = -4365.943305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47756 -40.04813 -39.28116 -37.33475 -36.38447 -35.51202 -33.27348 -33.04786 -31.84845 -31.68891 -30.86106 -29.65849 -26.55467 -25.38475 -24.33524 -23.26627 -22.30137 -21.32875 -20.19288 -19.43726 -19.08064 -17.66939 -17.34175 -16.98573 -16.71131 -16.26393 -16.13725 -15.93640 -15.56748 -15.25445 -14.88588 -14.36328 -14.34296 -14.08107 -13.61750 -13.43532 -13.36753 -13.25147 -13.03165 -12.80388 -12.73957 -12.58801 -12.37290 -12.22537 -11.98689 -11.75704 -11.61329 -11.48132 -11.35681 -11.15318 -11.01758 -10.99066 -10.70702 -10.64209 -10.31095 -9.99688 -9.95431 -9.90506 -9.85053 -9.51259 -9.03188 -8.78793 -8.74832 -6.30707 -4.36404 2.52237 2.72048 2.79417 3.04978 3.14568 3.16520 3.25306 3.31310 3.57483 4.22578 4.40127 4.60665 4.75686 4.77359 4.95225 4.97178 4.97891 4.98137 5.03146 5.12847 5.18364 5.20883 5.25810 5.33031 5.39809 5.51595 5.63076 5.66414 5.72793 5.76216 5.79457 5.82760 5.93668 5.94874 5.99413 6.06748 6.18158 6.29523 6.33111 6.51802 6.72059 6.85597 7.29292 7.30359 7.57926 8.07653 8.19727 8.26421 8.65592 8.81157 9.28898 10.80802 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.004379 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.791591 B = 6392.526095 C = 8672.549318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.364 6.364 4 C 0.456 3.544 5 O -0.508 6.508 6 C -0.111 4.111 7 C 0.198 3.802 8 H 0.064 0.936 9 C -0.538 4.538 10 H 0.086 0.914 11 C 0.090 3.910 12 N -0.878 5.878 13 Si 0.856 3.144 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.255 1.255 17 O -0.350 6.350 18 C 0.474 3.526 19 O -0.504 6.504 20 C -0.094 4.094 21 H 0.106 0.894 22 C -0.105 4.105 23 C -0.134 4.134 24 C 0.101 3.899 25 N -0.612 5.612 26 C 0.510 3.490 27 C -0.174 4.174 28 O -0.543 6.543 29 C 0.124 3.876 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.270 0.730 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 -16.139 10.501 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.282 6.282 4 C 0.300 3.700 5 O -0.395 6.395 6 C -0.149 4.149 7 C 0.144 3.856 8 H 0.081 0.919 9 C -0.575 4.575 10 H 0.104 0.896 11 C -0.116 4.116 12 N -0.514 5.514 13 Si 0.682 3.318 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.179 1.179 17 O -0.266 6.266 18 C 0.315 3.685 19 O -0.391 6.391 20 C -0.114 4.114 21 H 0.124 0.876 22 C -0.143 4.143 23 C -0.172 4.172 24 C -0.021 4.021 25 N -0.347 5.347 26 C 0.299 3.701 27 C -0.234 4.234 28 O -0.420 6.420 29 C 0.002 3.998 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.123 0.877 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.216 -16.023 10.102 18.980 hybrid contribution -0.167 -0.368 -1.103 1.175 sum -1.383 -16.391 8.999 18.750 Atomic orbital electron populations 1.21785 0.93054 1.02515 1.03422 1.22923 0.95056 0.81339 1.02260 1.86569 1.25640 1.31494 1.84508 1.24629 0.79847 0.93925 0.71620 1.90602 1.60274 1.43345 1.45292 1.22277 0.97394 0.89101 1.06158 1.20675 0.87611 0.94870 0.82418 0.91863 1.21076 1.43223 0.97961 0.95224 0.89555 1.24849 0.93526 0.94744 0.98486 1.69862 1.40058 1.16872 1.24582 0.87192 0.79620 0.81735 0.83280 1.19270 1.20359 1.17948 1.86291 1.38330 1.61439 1.40587 1.22710 0.79873 0.76242 0.89660 1.90606 1.57786 1.58096 1.32632 1.21339 0.96496 0.98461 0.95105 0.87601 1.21417 0.95300 1.00431 0.97161 1.21945 0.98313 0.98986 0.97922 1.21897 0.82720 0.95359 1.02162 1.48197 1.21301 1.53732 1.11450 1.20812 0.85073 0.80512 0.83685 1.21963 1.03131 1.01374 0.96888 1.90742 1.21900 1.46298 1.83082 1.21472 0.96325 0.94305 0.87703 0.91502 0.91626 0.90667 0.91687 0.91485 0.87023 0.86860 0.91960 0.90751 0.90184 0.90015 0.91124 0.91010 0.89224 0.88802 0.88992 0.89950 0.87692 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 37.15 0.38 -1.16 16 2 C 0.06 0.81 6.19 37.15 0.23 1.04 16 3 O -0.36 -6.34 10.22 -39.26 -0.40 -6.74 16 4 C 0.46 9.23 7.84 36.01 0.28 9.51 16 5 O -0.51 -11.28 15.18 -23.81 -0.36 -11.64 16 6 C -0.11 -2.35 5.27 -27.88 -0.15 -2.50 16 7 C 0.20 4.92 1.05 -27.88 -0.03 4.89 16 8 H 0.06 1.72 4.54 -51.93 -0.24 1.48 16 9 C -0.54 -15.03 9.23 -34.44 -0.32 -15.35 16 10 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 11 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 12 N -0.88 -26.01 13.96 55.43 0.77 -25.24 16 13 Si 0.86 20.99 25.90 -169.99 -4.40 16.58 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.26 -6.39 6.14 56.52 0.35 -6.04 16 17 O -0.35 -8.21 9.08 -44.32 -0.40 -8.61 16 18 C 0.47 10.34 7.22 36.00 0.26 10.60 16 19 O -0.50 -12.48 15.20 -18.76 -0.29 -12.76 16 20 C -0.09 -1.51 2.78 -91.65 -0.25 -1.77 16 21 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 22 C -0.11 -1.39 4.46 -26.69 -0.12 -1.51 16 23 C -0.13 -1.18 6.08 -26.61 -0.16 -1.35 16 24 C 0.10 0.83 6.22 -3.71 -0.02 0.81 16 25 N -0.61 -7.39 2.97 -172.77 -0.51 -7.91 16 26 C 0.51 6.49 7.81 -10.99 -0.09 6.41 16 27 C -0.17 -1.29 9.46 36.00 0.34 -0.95 16 28 O -0.54 -9.52 16.51 5.56 0.09 -9.43 16 29 C 0.12 1.91 5.65 -3.71 -0.02 1.89 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 34 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 35 H 0.11 2.28 6.40 -51.93 -0.33 1.95 16 36 H 0.11 2.19 8.14 -51.93 -0.42 1.76 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 39 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.47 5.52 -51.93 -0.29 0.18 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 46 H 0.08 0.40 6.19 -51.93 -0.32 0.08 16 47 H 0.10 1.87 7.01 -51.92 -0.36 1.50 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -36.04 392.43 -6.84 -42.88 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.49 Total: 3.96 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 0.24 Total: 12.99 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.26 Total: -33.15 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -1.36 Total: -49.18 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.40 Total: 16.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.04 -6.84 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.572 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds