Wall clock time and date at job start Wed Apr 1 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45208 * 109.46899 * 2 1 4 4 C 1.34231 * 116.99780 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00251 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99527 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.46575 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47552 * 54.48864 * 7 6 4 9 9 C 1.50707 * 109.46833 * 174.48306 * 7 6 4 10 10 H 1.08005 * 119.99720 * 95.00365 * 9 7 6 11 11 C 1.37880 * 120.00036 * 275.00037 * 9 7 6 12 12 N 1.31513 * 119.99797 * 185.01740 * 11 9 7 13 13 Si 1.86800 * 119.99992 * 5.02726 * 11 9 7 14 14 H 1.48497 * 109.47438 * 84.82300 * 13 11 9 15 15 H 1.48504 * 109.46757 * 204.82704 * 13 11 9 16 16 H 1.48495 * 109.46921 * 324.82078 * 13 11 9 17 17 O 1.45193 * 109.47777 * 294.48305 * 7 6 4 18 18 C 1.34229 * 117.00414 * 150.00222 * 17 7 6 19 19 O 1.20833 * 119.99722 * 359.97438 * 18 17 7 20 20 C 1.50696 * 120.00370 * 180.02562 * 18 17 7 21 21 H 1.08992 * 109.49732 * 300.06421 * 20 18 17 22 22 C 1.53037 * 109.50077 * 179.97438 * 20 18 17 23 23 C 1.53037 * 109.54343 * 178.68263 * 22 20 18 24 24 C 1.53195 * 109.31113 * 61.36185 * 23 22 20 25 25 N 1.46920 * 108.77892 * 305.36892 * 24 23 22 26 26 C 1.34776 * 120.63391 * 233.58299 * 25 24 23 27 27 C 1.50693 * 119.99676 * 0.02562 * 26 25 24 28 28 O 1.21278 * 120.00052 * 179.97438 * 26 25 24 29 29 C 1.46933 * 118.73525 * 53.60806 * 25 24 23 30 30 H 1.08998 * 109.47413 * 299.99906 * 1 2 3 31 31 H 1.08997 * 109.47270 * 59.99786 * 1 2 3 32 32 H 1.09009 * 109.47010 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47413 * 240.00094 * 2 1 3 34 34 H 1.08997 * 109.47270 * 120.00214 * 2 1 3 35 35 H 1.08997 * 109.47183 * 299.99766 * 6 4 3 36 36 H 1.09002 * 109.47189 * 60.00239 * 6 4 3 37 37 H 0.96998 * 119.99935 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.46146 * 298.70458 * 22 20 18 39 39 H 1.08999 * 109.45830 * 58.67214 * 22 20 18 40 40 H 1.09000 * 109.50345 * 181.31639 * 23 22 20 41 41 H 1.09003 * 109.49730 * 301.38472 * 23 22 20 42 42 H 1.09001 * 109.58711 * 65.15709 * 24 23 22 43 43 H 1.08997 * 109.58911 * 185.58182 * 24 23 22 44 44 H 1.08993 * 109.47774 * 89.99696 * 27 26 25 45 45 H 1.09012 * 109.46902 * 209.99494 * 27 26 25 46 46 H 1.09003 * 109.47300 * 329.98814 * 27 26 25 47 47 H 1.09010 * 109.58561 * 186.60523 * 29 25 24 48 48 H 1.08994 * 109.59019 * 66.18213 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9376 0.0012 7 6 5.4484 2.8575 0.0023 8 1 5.7807 2.2425 -0.8340 9 6 6.0242 4.2436 -0.1337 10 1 6.3098 4.7986 0.7478 11 6 6.1863 4.8033 -1.3833 12 7 6.7787 5.9706 -1.5091 13 14 5.5642 3.9035 -2.8975 14 1 4.1253 4.2101 -3.0993 15 1 6.3359 4.3444 -4.0872 16 1 5.7370 2.4406 -2.7098 17 8 5.9012 2.2655 1.2484 18 6 7.0459 1.5655 1.2100 19 8 7.6493 1.4508 0.1694 20 6 7.5778 0.9216 2.4643 21 1 7.7626 1.6884 3.2166 22 6 8.8843 0.1899 2.1485 23 6 9.4425 -0.4366 3.4282 24 6 8.4372 -1.4559 3.9735 25 7 7.1369 -0.7933 4.1434 26 6 6.4931 -0.8373 5.3267 27 6 7.1068 -1.5706 6.4914 28 8 5.4205 -0.2859 5.4543 29 6 6.5514 -0.0823 2.9986 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.5850 3.4700 -0.8888 36 1 3.5843 3.4695 0.8912 37 1 6.8925 6.3645 -2.3882 38 1 8.6938 -0.5927 1.4141 39 1 9.6085 0.8977 1.7451 40 1 10.3849 -0.9377 3.2070 41 1 9.6106 0.3427 4.1716 42 1 8.3369 -2.2825 3.2701 43 1 8.7839 -1.8323 4.9359 44 1 7.7318 -0.8852 7.0638 45 1 6.3160 -1.9620 7.1317 46 1 7.7161 -2.3952 6.1214 47 1 5.6539 0.4477 3.3178 48 1 6.2974 -0.7968 2.2157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870619480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:34 Heat of formation + Delta-G solvation = -241.132869 kcal Electronic energy + Delta-G solvation = -31529.022917 eV Core-core repulsion = 27162.052596 eV Total energy + Delta-G solvation = -4366.970321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91800 -41.47217 -40.77182 -38.59069 -37.88429 -37.27157 -35.27399 -34.27590 -33.38156 -32.69010 -32.29666 -30.45578 -28.48418 -26.41146 -25.69675 -24.56939 -23.57043 -22.66487 -21.71292 -21.14516 -20.05984 -19.60639 -18.79509 -18.53499 -18.23673 -17.69303 -17.55814 -17.33540 -16.86401 -16.57488 -16.39805 -15.97554 -15.45672 -15.37130 -15.01700 -14.87828 -14.61530 -14.40608 -14.31707 -14.27213 -13.87436 -13.70488 -13.60188 -13.40636 -13.24264 -13.13795 -12.97161 -12.91615 -12.62795 -12.55944 -12.52775 -12.05988 -12.01206 -11.93264 -11.88220 -11.70943 -11.62115 -11.56726 -11.38204 -11.12363 -10.91907 -10.83667 -9.79326 -8.50850 -6.62127 1.09460 1.17265 1.24900 1.28298 1.33434 1.59409 1.61892 1.77571 2.08420 2.16433 2.83834 3.45689 3.55175 3.64869 3.73726 3.81768 3.95690 3.96889 4.04104 4.06346 4.09991 4.13919 4.25373 4.30352 4.42424 4.45395 4.57853 4.58724 4.62169 4.67424 4.77917 4.79168 4.84079 4.89353 4.89927 4.96611 5.08411 5.09552 5.17347 5.20527 5.32996 5.37601 5.39622 5.69729 6.05633 6.39704 6.44500 6.67613 6.85991 7.09370 7.12227 8.64664 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.004379 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.791591 B = 6392.526095 C = 8672.549318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.533 6.533 6 C -0.110 4.110 7 C 0.203 3.797 8 H 0.041 0.959 9 C -0.547 4.547 10 H 0.048 0.952 11 C 0.044 3.956 12 N -0.920 5.920 13 Si 0.910 3.090 14 H -0.231 1.231 15 H -0.271 1.271 16 H -0.267 1.267 17 O -0.358 6.358 18 C 0.463 3.537 19 O -0.539 6.539 20 C -0.084 4.084 21 H 0.111 0.889 22 C -0.104 4.104 23 C -0.124 4.124 24 C 0.096 3.904 25 N -0.610 5.610 26 C 0.501 3.499 27 C -0.163 4.163 28 O -0.603 6.603 29 C 0.135 3.865 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.276 0.724 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 -18.902 11.514 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.423 6.423 6 C -0.148 4.148 7 C 0.148 3.852 8 H 0.058 0.942 9 C -0.584 4.584 10 H 0.066 0.934 11 C -0.158 4.158 12 N -0.557 5.557 13 Si 0.733 3.267 14 H -0.154 1.154 15 H -0.196 1.196 16 H -0.193 1.193 17 O -0.274 6.274 18 C 0.306 3.694 19 O -0.428 6.428 20 C -0.104 4.104 21 H 0.129 0.871 22 C -0.141 4.141 23 C -0.161 4.161 24 C -0.025 4.025 25 N -0.343 5.343 26 C 0.292 3.708 27 C -0.221 4.221 28 O -0.485 6.485 29 C 0.011 3.989 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.152 0.848 44 H 0.133 0.867 45 H 0.112 0.888 46 H 0.135 0.865 47 H 0.091 0.909 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.378 -18.802 11.135 21.895 hybrid contribution -0.099 0.460 -1.358 1.437 sum -1.477 -18.342 9.777 20.838 Atomic orbital electron populations 1.21819 0.89749 1.04540 1.03844 1.23346 0.97576 0.79341 1.02306 1.86538 1.23508 1.33877 1.83762 1.24204 0.80810 0.92984 0.71216 1.90595 1.61150 1.43929 1.46590 1.22032 0.94839 0.90433 1.07476 1.20437 0.89865 0.92476 0.82376 0.94164 1.21145 1.43910 0.99135 0.94212 0.93396 1.25572 0.93506 0.95365 1.01341 1.69968 1.41509 1.18481 1.25711 0.86337 0.81306 0.79505 0.79585 1.15413 1.19601 1.19270 1.86323 1.39383 1.61764 1.39904 1.23965 0.78822 0.75357 0.91265 1.90569 1.58467 1.59313 1.34482 1.21469 0.98030 0.98718 0.92204 0.87141 1.21475 0.93165 0.99747 0.99754 1.21954 0.99560 0.99339 0.95287 1.22284 0.80254 0.94981 1.04941 1.48340 1.22626 1.53116 1.10225 1.21929 0.84362 0.79788 0.84682 1.22006 1.03592 1.02085 0.94461 1.90716 1.24749 1.48940 1.84051 1.21066 0.95145 0.93897 0.88834 0.91195 0.91072 0.87803 0.91513 0.91729 0.85990 0.85328 0.91447 0.91435 0.91629 0.86682 0.90526 0.89832 0.84812 0.86713 0.88754 0.86475 0.90867 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.27 6.19 71.98 0.45 1.72 16 3 O -0.36 -12.22 10.22 -51.43 -0.53 -12.74 16 4 C 0.46 18.86 7.84 71.24 0.56 19.42 16 5 O -0.53 -24.21 15.18 26.81 0.41 -23.80 16 6 C -0.11 -4.72 5.27 29.85 0.16 -4.57 16 7 C 0.20 10.49 1.05 29.85 0.03 10.52 16 8 H 0.04 2.28 4.54 -2.39 -0.01 2.27 16 9 C -0.55 -32.07 9.23 25.60 0.24 -31.83 16 10 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 11 C 0.04 2.57 5.47 84.66 0.46 3.04 16 12 N -0.92 -56.18 13.96 21.45 0.30 -55.89 16 13 Si 0.91 43.76 25.90 68.60 1.78 45.53 16 14 H -0.23 -9.72 7.11 99.48 0.71 -9.01 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.27 -13.38 6.14 99.48 0.61 -12.77 16 17 O -0.36 -17.73 9.08 -46.56 -0.42 -18.15 16 18 C 0.46 21.31 7.22 71.23 0.51 21.83 16 19 O -0.54 -28.14 15.20 21.94 0.33 -27.81 16 20 C -0.08 -2.81 2.78 -11.46 -0.03 -2.84 16 21 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 22 C -0.10 -2.70 4.46 30.62 0.14 -2.56 16 23 C -0.12 -1.80 6.08 30.67 0.19 -1.61 16 24 C 0.10 1.20 6.22 86.36 0.54 1.74 16 25 N -0.61 -13.82 2.97 -818.91 -2.43 -16.25 16 26 C 0.50 12.04 7.81 87.66 0.68 12.72 16 27 C -0.16 -1.77 9.46 71.23 0.67 -1.10 16 28 O -0.60 -21.57 16.51 -3.02 -0.05 -21.62 16 29 C 0.13 4.27 5.65 86.36 0.49 4.75 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 34 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 35 H 0.12 4.93 6.40 -2.39 -0.02 4.91 16 36 H 0.13 5.05 8.14 -2.39 -0.02 5.03 16 37 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 39 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.13 0.57 5.52 -2.39 -0.01 0.56 16 44 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.12 0.46 6.19 -2.39 -0.01 0.44 16 47 H 0.07 2.79 7.01 -2.38 -0.02 2.77 16 48 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -85.84 392.43 6.07 -79.76 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.87 Total: 21.58 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 5.82 Total: 29.39 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -2.13 Total: -72.14 kcal Atomic # 8 Polarization: -103.87 SS G_CDS: -0.26 Total: -104.13 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.78 Total: 45.53 kcal Total: -85.84 6.07 -79.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.369 kcal (2) G-P(sol) polarization free energy of solvation -85.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds