Wall clock time and date at job start Wed Apr 1 2020 01:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.47408 * 2 1 4 4 C 1.34229 * 117.00035 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00046 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99915 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47296 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47080 * 54.99634 * 7 6 4 9 9 C 1.50700 * 109.47209 * 175.00007 * 7 6 4 10 10 H 1.08002 * 119.99385 * 239.99499 * 9 7 6 11 11 C 1.37873 * 120.00064 * 60.00015 * 9 7 6 12 12 N 1.31513 * 120.00161 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99761 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47167 * 59.99806 * 13 11 9 15 15 H 1.48500 * 109.47156 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47105 * 299.99564 * 13 11 9 17 17 O 1.45199 * 109.46824 * 294.99608 * 7 6 4 18 18 C 1.34238 * 116.99903 * 149.99838 * 17 7 6 19 19 O 1.20825 * 119.99991 * 0.02562 * 18 17 7 20 20 C 1.50698 * 119.99807 * 180.02562 * 18 17 7 21 21 H 1.09005 * 109.49639 * 59.93528 * 20 18 17 22 22 C 1.53038 * 109.49479 * 180.02562 * 20 18 17 23 23 C 1.53047 * 109.53850 * 181.35205 * 22 20 18 24 24 C 1.53195 * 109.30612 * 298.63213 * 23 22 20 25 25 N 1.46928 * 108.77793 * 54.63954 * 24 23 22 26 26 C 1.34767 * 120.63377 * 126.36473 * 25 24 23 27 27 C 1.50696 * 120.00174 * 184.89319 * 26 25 24 28 28 O 1.21284 * 120.00210 * 4.88948 * 26 25 24 29 29 C 1.46926 * 118.73191 * 306.63850 * 25 24 23 30 30 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46627 * 300.00071 * 1 2 3 32 32 H 1.09004 * 109.46653 * 59.99634 * 1 2 3 33 33 H 1.09006 * 109.46871 * 239.99950 * 2 1 3 34 34 H 1.09003 * 109.47081 * 120.00684 * 2 1 3 35 35 H 1.09000 * 109.47775 * 59.99701 * 6 4 3 36 36 H 1.09001 * 109.47041 * 299.99905 * 6 4 3 37 37 H 0.97003 * 120.00106 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.46222 * 61.33212 * 22 20 18 39 39 H 1.09008 * 109.45180 * 301.35878 * 22 20 18 40 40 H 1.08993 * 109.49738 * 178.68499 * 23 22 20 41 41 H 1.08998 * 109.49713 * 58.58027 * 23 22 20 42 42 H 1.09001 * 109.59030 * 294.84710 * 24 23 22 43 43 H 1.09002 * 109.69741 * 174.49088 * 24 23 22 44 44 H 1.08998 * 109.47181 * 354.59371 * 27 26 25 45 45 H 1.09007 * 109.47513 * 114.59048 * 27 26 25 46 46 H 1.08997 * 109.47439 * 234.59406 * 27 26 25 47 47 H 1.09001 * 109.58283 * 173.14485 * 29 25 24 48 48 H 1.08998 * 109.59260 * 293.56568 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8572 -0.0014 8 1 5.7800 2.2501 -0.8440 9 6 6.0244 4.2444 -0.1247 10 1 6.6585 4.4933 -0.9628 11 6 5.7416 5.1957 0.8324 12 7 4.9692 4.8926 1.8527 13 14 6.4546 6.9155 0.6791 14 1 5.9896 7.5329 -0.5888 15 1 6.0030 7.7427 1.8267 16 1 7.9376 6.8382 0.6774 17 8 5.9029 2.2532 1.2385 18 6 7.0475 1.5534 1.1921 19 8 7.6501 1.4494 0.1500 20 6 7.5807 0.8976 2.4397 21 1 6.8491 0.1823 2.8158 22 6 8.8874 0.1699 2.1155 23 6 9.4123 -0.5247 3.3742 24 6 9.6986 0.5268 4.4509 25 7 8.4852 1.3271 4.6649 26 6 7.9679 1.4730 5.9008 27 6 6.6636 2.2037 6.0903 28 8 8.5520 1.0162 6.8605 29 6 7.8431 1.9604 3.5050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 3.5854 3.4690 0.8904 36 1 3.5845 3.4699 -0.8895 37 1 4.7699 5.5620 2.5259 38 1 9.6262 0.8897 1.7632 39 1 8.7060 -0.5737 1.3394 40 1 10.3305 -1.0620 3.1372 41 1 8.6637 -1.2268 3.7413 42 1 10.5107 1.1751 4.1218 43 1 9.9794 0.0330 5.3812 44 1 6.3395 2.6217 5.1372 45 1 5.9081 1.5092 6.4580 46 1 6.7996 3.0085 6.8126 47 1 6.8986 2.4103 3.8107 48 1 8.5007 2.7281 3.0971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870619481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:37 Heat of formation + Delta-G solvation = -218.116492 kcal Electronic energy + Delta-G solvation = -31691.187531 eV Core-core repulsion = 27325.215274 eV Total energy + Delta-G solvation = -4365.972256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.28563 -39.85563 -39.04633 -37.11940 -36.19399 -35.28646 -33.19163 -32.91900 -31.69894 -31.61234 -30.27183 -29.26253 -26.37493 -25.12084 -24.32486 -23.28403 -22.08339 -21.29039 -19.97457 -19.47734 -18.86938 -17.30976 -17.19124 -16.83781 -16.30440 -16.09910 -15.90922 -15.51876 -15.42902 -14.89921 -14.76629 -14.63456 -14.07043 -13.86948 -13.71182 -13.43808 -13.13045 -13.09357 -12.86914 -12.71916 -12.39792 -12.11416 -11.97811 -11.93200 -11.81208 -11.55887 -11.38738 -11.24686 -11.09257 -10.98242 -10.86447 -10.81923 -10.75844 -10.56822 -10.33667 -10.19920 -9.77617 -9.65123 -9.51930 -9.33662 -8.85724 -8.81133 -8.58442 -6.33522 -4.50538 2.70164 2.94234 3.00894 3.14390 3.21195 3.23572 3.27784 3.38421 3.84397 4.18890 4.70021 4.77492 4.96455 4.99441 5.04029 5.06732 5.10546 5.16272 5.28554 5.34053 5.40166 5.42283 5.53529 5.57460 5.60160 5.75735 5.83797 5.85276 5.87852 5.90796 5.97903 6.00966 6.05716 6.14628 6.27685 6.31322 6.43579 6.52163 6.55903 6.86044 6.95023 7.20573 7.46358 7.59425 7.86313 7.93059 8.24303 8.43969 8.57452 9.02616 9.26423 10.68526 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007885 B = 0.004429 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.059482 B = 6320.735973 C = 7914.213805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.518 6.518 6 C -0.102 4.102 7 C 0.231 3.769 8 H 0.045 0.955 9 C -0.546 4.546 10 H 0.069 0.931 11 C 0.084 3.916 12 N -0.861 5.861 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.274 1.274 17 O -0.330 6.330 18 C 0.470 3.530 19 O -0.525 6.525 20 C -0.096 4.096 21 H 0.100 0.900 22 C -0.103 4.103 23 C -0.132 4.132 24 C 0.107 3.893 25 N -0.610 5.610 26 C 0.518 3.482 27 C -0.185 4.185 28 O -0.559 6.559 29 C 0.114 3.886 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.268 0.732 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.113 0.887 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -6.510 2.805 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.406 6.406 6 C -0.140 4.140 7 C 0.179 3.821 8 H 0.063 0.937 9 C -0.582 4.582 10 H 0.087 0.913 11 C -0.123 4.123 12 N -0.496 5.496 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.199 1.199 17 O -0.244 6.244 18 C 0.312 3.688 19 O -0.416 6.416 20 C -0.116 4.116 21 H 0.118 0.882 22 C -0.141 4.141 23 C -0.170 4.170 24 C -0.015 4.015 25 N -0.344 5.344 26 C 0.308 3.692 27 C -0.244 4.244 28 O -0.438 6.438 29 C -0.009 4.009 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.159 0.841 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.131 0.869 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.942 -6.982 3.160 7.906 hybrid contribution 0.296 0.770 -0.279 0.870 sum -1.647 -6.213 2.881 7.043 Atomic orbital electron populations 1.21779 0.93260 1.02350 1.03352 1.22859 0.94885 0.81757 1.02025 1.86578 1.26105 1.31006 1.84679 1.24931 0.79489 0.94324 0.71077 1.90590 1.60265 1.43705 1.46006 1.21883 0.96696 0.88079 1.07301 1.20035 0.87983 0.92508 0.81592 0.93680 1.21330 1.32382 0.94312 1.10219 0.91316 1.25066 0.93786 0.98952 0.94499 1.69851 1.34282 1.34620 1.10882 0.86598 0.79876 0.83312 0.78018 1.19767 1.20872 1.19945 1.86573 1.36632 1.59389 1.41838 1.22691 0.80721 0.76247 0.89151 1.90536 1.59025 1.59346 1.32688 1.21248 0.98754 0.98335 0.93256 0.88165 1.21398 0.95502 0.99996 0.97196 1.21931 1.01878 0.97868 0.95318 1.21624 0.86689 0.93303 0.99881 1.48223 1.27692 1.51195 1.07259 1.20846 0.86965 0.79446 0.81968 1.22082 0.94915 1.02010 1.05383 1.90664 1.62615 1.50965 1.39554 1.21761 1.00286 0.94047 0.84771 0.90834 0.91573 0.91694 0.91881 0.91759 0.84117 0.87883 0.92181 0.90793 0.90703 0.90335 0.91487 0.91442 0.89103 0.88754 0.88760 0.88897 0.86913 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.15 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -6.42 10.22 -39.26 -0.40 -6.82 16 4 C 0.46 9.27 7.84 36.01 0.28 9.56 16 5 O -0.52 -11.61 15.17 -23.95 -0.36 -11.97 16 6 C -0.10 -2.17 5.23 -27.88 -0.15 -2.32 16 7 C 0.23 5.55 1.64 -27.88 -0.05 5.50 16 8 H 0.05 1.16 6.97 -51.93 -0.36 0.79 16 9 C -0.55 -13.72 8.91 -34.44 -0.31 -14.02 16 10 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 11 C 0.08 2.02 5.25 -17.82 -0.09 1.93 16 12 N -0.86 -20.57 10.93 55.43 0.61 -19.97 16 13 Si 0.90 19.08 29.54 -169.99 -5.02 14.06 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 O -0.33 -7.68 8.46 -44.48 -0.38 -8.06 16 18 C 0.47 10.18 7.23 36.00 0.26 10.44 16 19 O -0.53 -12.70 15.20 -18.75 -0.28 -12.98 16 20 C -0.10 -1.59 2.76 -91.88 -0.25 -1.84 16 21 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 22 C -0.10 -1.50 4.46 -26.69 -0.12 -1.62 16 23 C -0.13 -1.55 6.08 -26.61 -0.16 -1.72 16 24 C 0.11 1.38 6.42 -3.71 -0.02 1.35 16 25 N -0.61 -8.80 2.98 -173.03 -0.52 -9.32 16 26 C 0.52 7.88 7.80 -10.99 -0.09 7.80 16 27 C -0.19 -2.30 10.12 36.00 0.36 -1.93 16 28 O -0.56 -10.15 16.53 5.55 0.09 -10.05 16 29 C 0.11 1.76 5.54 -3.93 -0.02 1.74 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 35 H 0.14 3.16 6.22 -51.93 -0.32 2.84 16 36 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 37 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 38 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 39 H 0.07 1.13 8.07 -51.92 -0.42 0.71 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.20 7.03 -51.93 -0.37 0.83 16 44 H 0.09 1.20 5.10 -51.93 -0.27 0.93 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.11 1.78 5.04 -51.93 -0.26 1.51 16 48 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -30.42 394.63 -7.51 -37.93 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.46 Total: 6.47 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 0.26 Total: 14.77 kcal Atomic # 7 Polarization: -29.38 SS G_CDS: 0.09 Total: -29.29 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -1.33 Total: -49.89 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.42 -7.51 -37.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.185 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds