Wall clock time and date at job start Wed Apr 1 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.47408 * 2 1 4 4 C 1.34229 * 117.00035 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00046 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99915 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47296 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47080 * 54.99634 * 7 6 4 9 9 C 1.50700 * 109.47209 * 175.00007 * 7 6 4 10 10 H 1.08002 * 119.99385 * 239.99499 * 9 7 6 11 11 C 1.37873 * 120.00064 * 60.00015 * 9 7 6 12 12 N 1.31513 * 120.00161 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99761 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47167 * 59.99806 * 13 11 9 15 15 H 1.48500 * 109.47156 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47105 * 299.99564 * 13 11 9 17 17 O 1.45199 * 109.46824 * 294.99608 * 7 6 4 18 18 C 1.34238 * 116.99903 * 149.99838 * 17 7 6 19 19 O 1.20825 * 119.99991 * 0.02562 * 18 17 7 20 20 C 1.50698 * 119.99807 * 180.02562 * 18 17 7 21 21 H 1.09005 * 109.49639 * 59.93528 * 20 18 17 22 22 C 1.53038 * 109.49479 * 180.02562 * 20 18 17 23 23 C 1.53047 * 109.53850 * 181.35205 * 22 20 18 24 24 C 1.53195 * 109.30612 * 298.63213 * 23 22 20 25 25 N 1.46928 * 108.77793 * 54.63954 * 24 23 22 26 26 C 1.34767 * 120.63377 * 126.36473 * 25 24 23 27 27 C 1.50696 * 120.00174 * 184.89319 * 26 25 24 28 28 O 1.21284 * 120.00210 * 4.88948 * 26 25 24 29 29 C 1.46926 * 118.73191 * 306.63850 * 25 24 23 30 30 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46627 * 300.00071 * 1 2 3 32 32 H 1.09004 * 109.46653 * 59.99634 * 1 2 3 33 33 H 1.09006 * 109.46871 * 239.99950 * 2 1 3 34 34 H 1.09003 * 109.47081 * 120.00684 * 2 1 3 35 35 H 1.09000 * 109.47775 * 59.99701 * 6 4 3 36 36 H 1.09001 * 109.47041 * 299.99905 * 6 4 3 37 37 H 0.97003 * 120.00106 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.46222 * 61.33212 * 22 20 18 39 39 H 1.09008 * 109.45180 * 301.35878 * 22 20 18 40 40 H 1.08993 * 109.49738 * 178.68499 * 23 22 20 41 41 H 1.08998 * 109.49713 * 58.58027 * 23 22 20 42 42 H 1.09001 * 109.59030 * 294.84710 * 24 23 22 43 43 H 1.09002 * 109.69741 * 174.49088 * 24 23 22 44 44 H 1.08998 * 109.47181 * 354.59371 * 27 26 25 45 45 H 1.09007 * 109.47513 * 114.59048 * 27 26 25 46 46 H 1.08997 * 109.47439 * 234.59406 * 27 26 25 47 47 H 1.09001 * 109.58283 * 173.14485 * 29 25 24 48 48 H 1.08998 * 109.59260 * 293.56568 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8572 -0.0014 8 1 5.7800 2.2501 -0.8440 9 6 6.0244 4.2444 -0.1247 10 1 6.6585 4.4933 -0.9628 11 6 5.7416 5.1957 0.8324 12 7 4.9692 4.8926 1.8527 13 14 6.4546 6.9155 0.6791 14 1 5.9896 7.5329 -0.5888 15 1 6.0030 7.7427 1.8267 16 1 7.9376 6.8382 0.6774 17 8 5.9029 2.2532 1.2385 18 6 7.0475 1.5534 1.1921 19 8 7.6501 1.4494 0.1500 20 6 7.5807 0.8976 2.4397 21 1 6.8491 0.1823 2.8158 22 6 8.8874 0.1699 2.1155 23 6 9.4123 -0.5247 3.3742 24 6 9.6986 0.5268 4.4509 25 7 8.4852 1.3271 4.6649 26 6 7.9679 1.4730 5.9008 27 6 6.6636 2.2037 6.0903 28 8 8.5520 1.0162 6.8605 29 6 7.8431 1.9604 3.5050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 3.5854 3.4690 0.8904 36 1 3.5845 3.4699 -0.8895 37 1 4.7699 5.5620 2.5259 38 1 9.6262 0.8897 1.7632 39 1 8.7060 -0.5737 1.3394 40 1 10.3305 -1.0620 3.1372 41 1 8.6637 -1.2268 3.7413 42 1 10.5107 1.1751 4.1218 43 1 9.9794 0.0330 5.3812 44 1 6.3395 2.6217 5.1372 45 1 5.9081 1.5092 6.4580 46 1 6.7996 3.0085 6.8126 47 1 6.8986 2.4103 3.8107 48 1 8.5007 2.7281 3.0971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870619481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:36 Heat of formation + Delta-G solvation = -233.822655 kcal Electronic energy + Delta-G solvation = -31691.868601 eV Core-core repulsion = 27325.215274 eV Total energy + Delta-G solvation = -4366.653326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70743 -41.35375 -40.61813 -38.48277 -37.71911 -37.02860 -35.02924 -34.13811 -33.05088 -32.76587 -31.85340 -30.34521 -28.16479 -26.29781 -25.78759 -24.59503 -23.42407 -22.59583 -21.54575 -21.09193 -20.06330 -19.01937 -18.65505 -18.32917 -17.91540 -17.53049 -17.21338 -17.17782 -16.79824 -16.43920 -16.33990 -16.10733 -15.32197 -15.26220 -14.99229 -14.62794 -14.49979 -14.27692 -14.16355 -14.09330 -13.69338 -13.60349 -13.40763 -13.05531 -12.95917 -12.93243 -12.80991 -12.73096 -12.60444 -12.54374 -12.44469 -12.08224 -12.03247 -11.94854 -11.76464 -11.51866 -11.46016 -11.36731 -11.10969 -10.84413 -10.72746 -10.65148 -9.80279 -8.19007 -6.43619 1.31157 1.43792 1.47102 1.48661 1.54405 1.59813 1.83478 1.92706 2.27191 2.40984 3.12417 3.52145 3.57872 3.74332 3.88148 3.95378 4.00593 4.02500 4.11526 4.14517 4.24977 4.29386 4.36692 4.44816 4.51601 4.52475 4.58658 4.62665 4.70804 4.80582 4.85299 4.89523 4.91759 4.94732 5.04278 5.10311 5.15778 5.17150 5.29198 5.34442 5.42849 5.53106 5.69108 5.98920 6.15041 6.27569 6.62449 6.87984 7.05427 7.22080 7.37109 8.82695 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007885 B = 0.004429 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.059482 B = 6320.735973 C = 7914.213805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.364 6.364 4 C 0.465 3.535 5 O -0.544 6.544 6 C -0.095 4.095 7 C 0.232 3.768 8 H 0.016 0.984 9 C -0.574 4.574 10 H 0.051 0.949 11 C 0.059 3.941 12 N -0.866 5.866 13 Si 0.948 3.052 14 H -0.270 1.270 15 H -0.271 1.271 16 H -0.283 1.283 17 O -0.337 6.337 18 C 0.461 3.539 19 O -0.557 6.557 20 C -0.088 4.088 21 H 0.111 0.889 22 C -0.099 4.099 23 C -0.118 4.118 24 C 0.102 3.898 25 N -0.607 5.607 26 C 0.515 3.485 27 C -0.180 4.180 28 O -0.589 6.589 29 C 0.125 3.875 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.274 0.726 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.112 0.888 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 -6.687 3.872 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.281 6.281 4 C 0.310 3.690 5 O -0.434 6.434 6 C -0.132 4.132 7 C 0.179 3.821 8 H 0.034 0.966 9 C -0.611 4.611 10 H 0.069 0.931 11 C -0.148 4.148 12 N -0.501 5.501 13 Si 0.773 3.227 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.209 1.209 17 O -0.251 6.251 18 C 0.305 3.695 19 O -0.449 6.449 20 C -0.108 4.108 21 H 0.129 0.871 22 C -0.137 4.137 23 C -0.156 4.156 24 C -0.019 4.019 25 N -0.340 5.340 26 C 0.306 3.694 27 C -0.239 4.239 28 O -0.471 6.471 29 C 0.002 3.998 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.124 0.876 47 H 0.130 0.870 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.808 -7.162 4.227 8.778 hybrid contribution 0.510 0.761 -0.642 1.119 sum -2.297 -6.401 3.585 7.688 Atomic orbital electron populations 1.21807 0.89955 1.04390 1.03741 1.23277 0.97422 0.79711 1.02078 1.86549 1.24138 1.33484 1.83943 1.24574 0.80372 0.93475 0.70562 1.90575 1.61153 1.44310 1.47347 1.21678 0.95063 0.89026 1.07453 1.19911 0.89571 0.91561 0.81027 0.96578 1.21347 1.33561 0.95480 1.10681 0.93105 1.25507 0.93884 1.01345 0.94030 1.69894 1.33878 1.35532 1.10782 0.85788 0.78560 0.79972 0.78387 1.19455 1.19601 1.20873 1.86565 1.37454 1.59737 1.41364 1.23674 0.79870 0.75551 0.90455 1.90510 1.59621 1.60431 1.34375 1.21313 0.99848 0.98488 0.91115 0.87141 1.21392 0.94144 0.99599 0.98543 1.21867 1.03144 0.97345 0.93239 1.21790 0.86340 0.93587 1.00215 1.48246 1.27970 1.51045 1.06716 1.21289 0.87495 0.79040 0.81563 1.22094 0.93774 1.02419 1.05590 1.90652 1.63672 1.52436 1.40331 1.21558 1.00174 0.93387 0.84712 0.87930 0.91296 0.91180 0.91775 0.91900 0.84950 0.86634 0.91585 0.91565 0.91309 0.87516 0.91138 0.90490 0.89082 0.89110 0.87274 0.87642 0.87034 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.05 1.30 6.19 71.98 0.45 1.74 16 3 O -0.36 -12.52 10.22 -51.41 -0.53 -13.04 16 4 C 0.46 19.00 7.84 71.24 0.56 19.56 16 5 O -0.54 -24.79 15.17 26.94 0.41 -24.38 16 6 C -0.09 -4.09 5.23 29.85 0.16 -3.94 16 7 C 0.23 11.52 1.64 29.85 0.05 11.57 16 8 H 0.02 0.87 6.97 -2.39 -0.02 0.86 16 9 C -0.57 -29.65 8.91 25.60 0.23 -29.42 16 10 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 11 C 0.06 2.84 5.25 84.65 0.44 3.29 16 12 N -0.87 -40.99 10.93 21.45 0.23 -40.76 16 13 Si 0.95 38.82 29.54 68.60 2.03 40.84 16 14 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 15 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 17 O -0.34 -16.08 8.46 -46.52 -0.39 -16.47 16 18 C 0.46 20.47 7.23 71.24 0.51 20.99 16 19 O -0.56 -27.96 15.20 21.97 0.33 -27.62 16 20 C -0.09 -2.90 2.76 -11.61 -0.03 -2.93 16 21 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 22 C -0.10 -2.81 4.46 30.62 0.14 -2.67 16 23 C -0.12 -2.54 6.08 30.68 0.19 -2.36 16 24 C 0.10 2.45 6.42 86.36 0.55 3.01 16 25 N -0.61 -16.77 2.98 -819.74 -2.44 -19.21 16 26 C 0.51 15.00 7.80 87.66 0.68 15.68 16 27 C -0.18 -4.19 10.12 71.23 0.72 -3.47 16 28 O -0.59 -20.72 16.53 -3.04 -0.05 -20.77 16 29 C 0.12 3.80 5.54 86.22 0.48 4.28 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.70 8.13 -2.38 -0.02 1.68 16 34 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 35 H 0.13 5.99 6.22 -2.39 -0.01 5.97 16 36 H 0.12 4.59 8.14 -2.39 -0.02 4.57 16 37 H 0.27 12.19 8.31 -92.71 -0.77 11.42 16 38 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 39 H 0.07 2.04 8.07 -2.38 -0.02 2.02 16 40 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 2.24 7.03 -2.39 -0.02 2.23 16 44 H 0.09 2.19 5.10 -2.39 -0.01 2.18 16 45 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.11 3.46 5.04 -2.39 -0.01 3.44 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -66.28 394.63 6.42 -59.85 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.96 Total: 28.04 kcal Atomic # 6 Polarization: 27.66 SS G_CDS: 5.86 Total: 33.52 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -2.21 Total: -59.97 kcal Atomic # 8 Polarization: -102.07 SS G_CDS: -0.23 Total: -102.29 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.84 kcal Total: -66.28 6.42 -59.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.969 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds