Wall clock time and date at job start Wed Apr 1 2020 01:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45188 * 109.47474 * 2 1 4 4 C 1.34229 * 117.00319 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99421 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00531 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.47440 * 180.02562 * 6 4 3 8 8 H 1.08995 * 109.46944 * 54.51519 * 7 6 4 9 9 C 1.50696 * 109.46997 * 174.51262 * 7 6 4 10 10 H 1.08011 * 119.99969 * 95.10030 * 9 7 6 11 11 C 1.37879 * 120.00141 * 275.09552 * 9 7 6 12 12 N 1.31518 * 119.99793 * 185.11587 * 11 9 7 13 13 Si 1.86797 * 120.00031 * 5.11388 * 11 9 7 14 14 H 1.48505 * 109.46825 * 94.88090 * 13 11 9 15 15 H 1.48497 * 109.47277 * 214.88432 * 13 11 9 16 16 H 1.48503 * 109.46841 * 334.88308 * 13 11 9 17 17 O 1.45204 * 109.46698 * 294.51127 * 7 6 4 18 18 C 1.34231 * 116.99414 * 149.99840 * 17 7 6 19 19 O 1.20829 * 120.00259 * 0.02562 * 18 17 7 20 20 C 1.50696 * 119.99878 * 179.97438 * 18 17 7 21 21 C 1.53040 * 109.46472 * 300.07046 * 20 18 17 22 22 C 1.53190 * 109.31485 * 178.61165 * 21 20 18 23 23 N 1.46922 * 108.77517 * 54.63608 * 22 21 20 24 24 C 1.34773 * 120.62901 * 126.36671 * 23 22 21 25 25 C 1.50702 * 120.00080 * 184.96640 * 24 23 22 26 26 O 1.21280 * 120.00436 * 4.96469 * 24 23 22 27 27 C 1.46924 * 118.74072 * 306.39138 * 23 22 21 28 28 C 1.53039 * 109.46371 * 180.02562 * 20 18 17 29 29 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46679 * 300.00450 * 1 2 3 31 31 H 1.08999 * 109.46887 * 60.00114 * 1 2 3 32 32 H 1.09000 * 109.46951 * 239.99142 * 2 1 3 33 33 H 1.09009 * 109.46893 * 119.99805 * 2 1 3 34 34 H 1.09005 * 109.46881 * 60.00002 * 6 4 3 35 35 H 1.09000 * 109.47461 * 300.00063 * 6 4 3 36 36 H 0.97005 * 119.99640 * 179.97438 * 12 11 9 37 37 H 1.09003 * 109.45998 * 60.03010 * 20 18 17 38 38 H 1.08995 * 109.49521 * 298.56897 * 21 20 18 39 39 H 1.09003 * 109.49134 * 58.65842 * 21 20 18 40 40 H 1.08999 * 109.58926 * 294.84888 * 22 21 20 41 41 H 1.09003 * 109.70090 * 174.49645 * 22 21 20 42 42 H 1.09005 * 109.47020 * 354.57782 * 25 24 23 43 43 H 1.09000 * 109.47520 * 114.57974 * 25 24 23 44 44 H 1.09004 * 109.47243 * 234.57630 * 25 24 23 45 45 H 1.09000 * 109.58764 * 293.82257 * 27 23 22 46 46 H 1.09000 * 109.58744 * 173.39615 * 27 23 22 47 47 H 1.09003 * 109.49765 * 301.33937 * 28 20 18 48 48 H 1.09004 * 109.49670 * 61.39851 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0015 6 6 3.9210 2.9372 0.0000 7 6 5.4489 2.8570 0.0001 8 1 5.7805 2.2419 -0.8364 9 6 6.0246 4.2430 -0.1363 10 1 6.3123 4.7974 0.7449 11 6 6.1841 4.8033 -1.3859 12 7 6.7782 5.9698 -1.5125 13 14 5.5563 3.9058 -2.8991 14 1 4.1971 4.3985 -3.2385 15 1 6.4732 4.1572 -4.0398 16 1 5.4994 2.4480 -2.6217 17 8 5.9023 2.2650 1.2461 18 6 7.0469 1.5648 1.2069 19 8 7.6501 1.4508 0.1662 20 6 7.5801 0.9219 2.4612 21 6 7.8404 1.9999 3.5158 22 6 8.3494 1.3393 4.8008 23 7 9.5227 0.5164 4.4767 24 6 10.6828 0.6826 5.1422 25 6 11.9081 -0.0890 4.7247 26 8 10.7408 1.4530 6.0771 27 6 9.4074 -0.4905 3.4131 28 6 8.8868 0.1911 2.1438 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.5846 3.4698 0.8895 35 1 3.5855 3.4689 -0.8905 36 1 6.8908 6.3639 -2.3918 37 1 6.8488 0.2095 2.8432 38 1 8.5899 2.6987 3.1444 39 1 6.9144 2.5358 3.7243 40 1 7.5664 0.7091 5.2226 41 1 8.6292 2.1067 5.5225 42 1 11.6424 -0.7948 3.9376 43 1 12.6638 0.6028 4.3524 44 1 12.3046 -0.6330 5.5820 45 1 8.7106 -1.2699 3.7217 46 1 10.3859 -0.9289 3.2173 47 1 8.7058 -0.5607 1.3756 48 1 9.6261 0.9072 1.7849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870621406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:32 Heat of formation + Delta-G solvation = -237.354136 kcal Electronic energy + Delta-G solvation = -31011.786614 eV Core-core repulsion = 26644.980151 eV Total energy + Delta-G solvation = -4366.806463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84086 -41.42589 -40.77068 -38.55608 -37.83386 -37.21279 -35.24913 -34.34188 -33.27612 -32.50669 -32.34892 -30.34606 -28.48546 -27.25480 -24.81326 -24.27372 -23.68562 -22.76497 -21.73662 -21.20932 -19.98442 -19.63432 -18.80840 -18.50866 -18.23367 -17.68115 -17.51940 -16.91201 -16.83615 -16.68163 -16.41812 -16.09476 -15.40533 -15.18825 -15.03581 -14.90033 -14.57553 -14.42421 -14.31634 -14.14235 -13.90902 -13.65667 -13.55693 -13.33886 -13.18884 -13.09012 -12.93573 -12.87847 -12.71069 -12.60310 -12.49045 -12.24697 -11.99739 -11.87675 -11.82396 -11.70800 -11.58238 -11.52400 -11.21240 -11.06009 -10.87279 -10.81425 -9.74079 -8.49199 -6.59948 1.13143 1.18213 1.26767 1.33926 1.42995 1.58558 1.65723 1.93356 2.06920 2.17301 2.86298 3.48927 3.56278 3.67132 3.77595 3.83515 3.97866 4.00451 4.08251 4.10775 4.16659 4.24426 4.29298 4.32174 4.34532 4.36165 4.56671 4.63946 4.69023 4.70843 4.78890 4.80007 4.84127 4.90043 4.93241 4.94708 5.06735 5.13465 5.16821 5.22998 5.25618 5.43068 5.48123 5.76732 6.08493 6.39671 6.47763 6.71959 6.93839 7.12954 7.13397 8.66284 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.003459 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.622484 B = 8093.963933 C = 9916.800627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 O -0.360 6.360 4 C 0.465 3.535 5 O -0.534 6.534 6 C -0.109 4.109 7 C 0.203 3.797 8 H 0.040 0.960 9 C -0.544 4.544 10 H 0.048 0.952 11 C 0.041 3.959 12 N -0.922 5.922 13 Si 0.911 3.089 14 H -0.234 1.234 15 H -0.277 1.277 16 H -0.261 1.261 17 O -0.355 6.355 18 C 0.458 3.542 19 O -0.547 6.547 20 C -0.071 4.071 21 C -0.118 4.118 22 C 0.120 3.880 23 N -0.615 5.615 24 C 0.504 3.496 25 C -0.174 4.174 26 O -0.602 6.602 27 C 0.110 3.890 28 C -0.118 4.118 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.275 0.725 37 H 0.132 0.868 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.128 0.872 47 H 0.090 0.910 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 -17.875 8.222 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.277 6.277 4 C 0.310 3.690 5 O -0.423 6.423 6 C -0.146 4.146 7 C 0.148 3.852 8 H 0.057 0.943 9 C -0.581 4.581 10 H 0.066 0.934 11 C -0.160 4.160 12 N -0.559 5.559 13 Si 0.734 3.266 14 H -0.158 1.158 15 H -0.202 1.202 16 H -0.186 1.186 17 O -0.271 6.271 18 C 0.303 3.697 19 O -0.438 6.438 20 C -0.090 4.090 21 C -0.156 4.156 22 C -0.003 4.003 23 N -0.348 5.348 24 C 0.295 3.705 25 C -0.232 4.232 26 O -0.484 6.484 27 C -0.011 4.011 28 C -0.156 4.156 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.146 0.854 47 H 0.109 0.891 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.727 -17.650 8.246 19.835 hybrid contribution 0.048 0.493 -1.257 1.351 sum -3.679 -17.157 6.989 18.888 Atomic orbital electron populations 1.21823 0.89933 1.04488 1.03790 1.23354 0.97419 0.79316 1.02488 1.86537 1.23498 1.33930 1.83755 1.24155 0.80766 0.92896 0.71179 1.90601 1.61178 1.43913 1.46639 1.21994 0.94750 0.90477 1.07398 1.20435 0.89869 0.92286 0.82597 0.94265 1.21171 1.43605 0.99279 0.94084 0.93421 1.25600 0.93645 0.95344 1.01460 1.69989 1.41742 1.18648 1.25549 0.86308 0.80753 0.79937 0.79632 1.15783 1.20220 1.18551 1.86285 1.39435 1.61802 1.39551 1.24281 0.78637 0.75242 0.91574 1.90568 1.58703 1.59410 1.35090 1.21161 0.99677 0.98430 0.89701 1.21813 1.02414 0.96778 0.94620 1.21534 0.87921 0.95430 0.95417 1.48406 1.11495 1.37866 1.37020 1.21623 0.85566 0.82058 0.81220 1.22087 0.94093 1.01795 1.05267 1.90682 1.85587 1.40891 1.31210 1.22171 1.05159 0.89772 0.84046 1.21847 0.94374 1.00294 0.99121 0.87861 0.91027 0.91394 0.91779 0.91101 0.85010 0.86440 0.91600 0.85008 0.93555 0.89227 0.88398 0.90116 0.87065 0.88361 0.87465 0.87867 0.85397 0.89120 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.29 71.98 0.74 -1.44 16 2 C 0.05 1.11 6.19 71.98 0.45 1.55 16 3 O -0.36 -11.03 10.22 -51.41 -0.53 -11.56 16 4 C 0.47 17.38 7.84 71.23 0.56 17.94 16 5 O -0.53 -22.48 15.18 26.80 0.41 -22.08 16 6 C -0.11 -4.33 5.27 29.85 0.16 -4.18 16 7 C 0.20 9.96 1.05 29.85 0.03 9.99 16 8 H 0.04 2.14 4.44 -2.39 -0.01 2.13 16 9 C -0.54 -30.99 9.23 25.60 0.24 -30.76 16 10 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 11 C 0.04 2.36 5.47 84.65 0.46 2.82 16 12 N -0.92 -55.93 13.96 21.45 0.30 -55.63 16 13 Si 0.91 42.98 26.03 68.60 1.79 44.76 16 14 H -0.23 -9.72 7.11 99.48 0.71 -9.02 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.26 -12.52 5.90 99.48 0.59 -11.93 16 17 O -0.35 -16.18 9.02 -46.58 -0.42 -16.60 16 18 C 0.46 19.61 7.22 71.23 0.51 20.12 16 19 O -0.55 -27.52 15.20 21.95 0.33 -27.18 16 20 C -0.07 -2.04 2.59 -11.51 -0.03 -2.07 16 21 C -0.12 -3.32 5.30 30.67 0.16 -3.15 16 22 C 0.12 2.73 6.42 86.36 0.55 3.29 16 23 N -0.61 -12.83 2.97 -818.93 -2.43 -15.27 16 24 C 0.50 11.79 7.80 87.66 0.68 12.47 16 25 C -0.17 -2.29 10.12 71.24 0.72 -1.57 16 26 O -0.60 -19.92 16.53 -3.03 -0.05 -19.97 16 27 C 0.11 1.61 6.36 86.36 0.55 2.16 16 28 C -0.12 -2.80 4.65 30.67 0.14 -2.65 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.07 1.60 8.13 -2.38 -0.02 1.58 16 34 H 0.13 4.69 8.14 -2.38 -0.02 4.67 16 35 H 0.12 4.49 6.38 -2.39 -0.02 4.47 16 36 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 37 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.56 8.08 -2.39 -0.02 2.54 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 2.14 7.03 -2.39 -0.02 2.12 16 42 H 0.11 0.81 5.10 -2.38 -0.01 0.79 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.13 1.11 5.04 -2.39 -0.01 1.10 16 47 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 48 H 0.05 1.59 8.13 -2.38 -0.02 1.57 16 Total: -1.00 -83.43 391.37 6.18 -77.25 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.85 Total: 21.74 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 5.93 Total: 24.52 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -2.13 Total: -70.90 kcal Atomic # 8 Polarization: -97.13 SS G_CDS: -0.26 Total: -97.38 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.79 Total: 44.76 kcal Total: -83.43 6.18 -77.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870621406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.101 kcal (2) G-P(sol) polarization free energy of solvation -83.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds