Wall clock time and date at job start Wed Apr 1 2020 01:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.47149 * 2 1 4 4 C 1.34224 * 117.00243 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00017 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.66987 * 59.30706 * 6 4 3 8 8 C 1.54886 * 110.75714 * 296.06813 * 6 4 3 9 9 C 1.54467 * 104.10019 * 203.89295 * 8 6 4 10 10 C 1.53880 * 106.68631 * 23.34216 * 9 8 6 11 11 H 1.08995 * 110.03162 * 240.87475 * 10 9 8 12 12 C 1.50698 * 110.03048 * 119.43963 * 10 9 8 13 13 O 1.21289 * 120.00610 * 266.23613 * 12 10 9 14 14 N 1.34778 * 119.99861 * 86.23663 * 12 10 9 15 15 C 1.37103 * 119.99908 * 4.20289 * 14 12 10 16 16 H 1.07997 * 119.99765 * 318.50937 * 15 14 12 17 17 C 1.38949 * 120.00056 * 138.51571 * 15 14 12 18 18 N 1.31406 * 120.00003 * 339.35894 * 17 15 14 19 19 Si 1.86799 * 119.99845 * 159.36779 * 17 15 14 20 20 H 1.48501 * 109.47657 * 89.99559 * 19 17 15 21 21 H 1.48502 * 109.47014 * 210.00079 * 19 17 15 22 22 H 1.48501 * 109.47202 * 329.99364 * 19 17 15 23 23 C 1.46501 * 120.00239 * 184.20090 * 14 12 10 24 24 C 1.52993 * 109.47208 * 89.99814 * 23 14 12 25 25 C 1.50697 * 109.47370 * 179.97438 * 24 23 14 26 26 O 1.20834 * 119.99503 * 0.02562 * 25 24 23 27 27 O 1.34227 * 120.00421 * 180.02562 * 25 24 23 28 28 C 1.45205 * 117.00017 * 180.02562 * 27 25 24 29 29 C 1.54267 * 106.59432 * 0.16202 * 10 9 8 30 30 H 1.08998 * 109.47001 * 299.99986 * 1 2 3 31 31 H 1.09002 * 109.46857 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46899 * 60.00222 * 1 2 3 33 33 H 1.08998 * 109.47338 * 119.99502 * 2 1 3 34 34 H 1.08999 * 109.47382 * 240.00395 * 2 1 3 35 35 H 1.08994 * 110.48793 * 322.41879 * 8 6 4 36 36 H 1.09001 * 110.48499 * 85.06539 * 8 6 4 37 37 H 1.09006 * 109.86064 * 264.10537 * 9 8 6 38 38 H 1.09003 * 110.16635 * 142.75401 * 9 8 6 39 39 H 0.96996 * 119.99906 * 185.03873 * 18 17 15 40 40 H 1.08999 * 109.46819 * 210.00198 * 23 14 12 41 41 H 1.08996 * 109.46779 * 329.99963 * 23 14 12 42 42 H 1.08995 * 109.47267 * 300.00372 * 24 23 14 43 43 H 1.09009 * 109.46988 * 60.00042 * 24 23 14 44 44 H 1.08994 * 109.47249 * 59.99966 * 28 27 25 45 45 H 1.09003 * 109.46845 * 180.02562 * 28 27 25 46 46 H 1.09005 * 109.46795 * 299.99396 * 28 27 25 47 47 H 1.08997 * 110.48199 * 217.71076 * 29 10 9 48 48 H 1.08994 * 110.48791 * 95.06650 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5862 3.4925 0.8765 8 6 3.5429 3.6872 -1.3016 9 6 4.6414 4.7633 -1.4484 10 6 5.8625 4.2586 -0.6596 11 1 6.1059 4.9584 0.1397 12 6 7.0427 4.0975 -1.5827 13 8 7.2710 3.0212 -2.0932 14 7 7.8446 5.1495 -1.8412 15 6 7.6385 6.3427 -1.1983 16 1 6.6339 6.7123 -1.0548 17 6 8.7220 7.0767 -0.7315 18 7 9.8781 6.4854 -0.5296 19 14 8.5353 8.9038 -0.3907 20 1 8.1102 9.1038 1.0180 21 1 9.8353 9.5849 -0.6170 22 1 7.5118 9.4753 -1.3024 23 6 8.9365 5.0179 -2.8089 24 6 8.4291 5.3887 -4.2039 25 6 9.5525 5.2539 -5.1993 26 8 10.6467 4.8974 -4.8308 27 8 9.3377 5.5300 -6.4952 28 6 10.4653 5.3778 -7.3973 29 6 5.4676 2.8917 -0.0634 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.5614 3.0068 -2.1529 36 1 2.5612 4.1507 -1.2037 37 1 4.2923 5.7081 -1.0317 38 1 4.9028 4.8926 -2.4987 39 1 10.6134 6.9800 -0.1352 40 1 9.7519 5.6851 -2.5296 41 1 9.2950 3.9886 -2.8144 42 1 7.6138 4.7215 -4.4831 43 1 8.0706 6.4181 -4.1983 44 1 10.8144 4.3456 -7.3717 45 1 10.1563 5.6322 -8.4112 46 1 11.2717 6.0420 -7.0862 47 1 5.8870 2.7760 0.9360 48 1 5.7989 2.0819 -0.7133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871338623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:08 Heat of formation + Delta-G solvation = -221.505376 kcal Electronic energy + Delta-G solvation = -30559.697753 eV Core-core repulsion = 26193.578543 eV Total energy + Delta-G solvation = -4366.119209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.56786 -40.06361 -39.06680 -37.08246 -36.29308 -36.00030 -34.82434 -32.04931 -31.91229 -30.88458 -29.22652 -28.45390 -27.45164 -25.04804 -24.30528 -23.34809 -22.06983 -20.88056 -20.17205 -19.72993 -18.86873 -17.81559 -17.32784 -16.76797 -16.61102 -16.26433 -16.17906 -15.93874 -15.76824 -15.29114 -14.58137 -14.31761 -14.08278 -13.79929 -13.58989 -13.46486 -13.06103 -13.04253 -12.87935 -12.69621 -12.23776 -12.13081 -12.04284 -11.86737 -11.73519 -11.66380 -11.30014 -11.16393 -11.07627 -10.90981 -10.82203 -10.68599 -10.59927 -10.55496 -10.48319 -10.44048 -10.16313 -10.10993 -10.04147 -9.92708 -9.16911 -8.42832 -7.53124 -6.42124 -4.15830 2.33475 2.65427 2.69261 3.03340 3.07966 3.18863 3.20661 3.82190 4.08025 4.59637 4.64143 4.74450 4.78284 4.83249 4.91419 5.05806 5.10370 5.22837 5.23371 5.29914 5.30565 5.53718 5.57510 5.62654 5.64567 5.73126 5.74823 5.77173 5.81603 5.89167 5.98366 6.04699 6.11064 6.25684 6.32193 6.43347 6.47753 6.53527 6.70622 6.72684 6.88914 6.93958 7.27869 7.43647 7.87657 7.91906 8.16810 8.30589 9.03044 9.45310 9.89712 10.61117 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003021 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.201515 B = 9265.821657 C =10995.883315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.502 6.502 6 C -0.087 4.087 7 H 0.112 0.888 8 C -0.106 4.106 9 C -0.103 4.103 10 C -0.097 4.097 11 H 0.103 0.897 12 C 0.483 3.517 13 O -0.598 6.598 14 N -0.439 5.439 15 C -0.352 4.352 16 H 0.091 0.909 17 C 0.049 3.951 18 N -0.852 5.852 19 Si 0.910 3.090 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.267 1.267 23 C 0.130 3.870 24 C -0.124 4.124 25 C 0.466 3.534 26 O -0.505 6.505 27 O -0.367 6.367 28 C 0.035 3.965 29 C -0.097 4.097 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.272 0.728 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 -2.146 -3.161 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.278 6.278 4 C 0.312 3.688 5 O -0.389 6.389 6 C -0.106 4.106 7 H 0.130 0.870 8 C -0.144 4.144 9 C -0.141 4.141 10 C -0.118 4.118 11 H 0.121 0.879 12 C 0.272 3.728 13 O -0.483 6.483 14 N -0.157 5.157 15 C -0.480 4.480 16 H 0.109 0.891 17 C -0.159 4.159 18 N -0.486 5.486 19 Si 0.736 3.264 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.191 1.191 23 C 0.006 3.994 24 C -0.163 4.163 25 C 0.308 3.692 26 O -0.392 6.392 27 O -0.284 6.284 28 C -0.059 4.059 29 C -0.134 4.134 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.214 -3.026 -3.323 13.015 hybrid contribution 0.301 0.833 0.197 0.907 sum -11.913 -2.193 -3.127 12.511 Atomic orbital electron populations 1.21793 0.92799 1.02768 1.03464 1.22986 0.95209 0.80777 1.02533 1.86522 1.25056 1.31888 1.84293 1.23826 0.80130 0.92906 0.71957 1.90675 1.60334 1.43136 1.44751 1.22124 0.97733 0.89073 1.01696 0.87005 1.22347 0.99188 0.97609 0.95249 1.21990 0.93257 0.97777 1.01050 1.21634 0.93949 0.97373 0.98872 0.87906 1.20362 0.85737 0.83459 0.83207 1.90535 1.75044 1.26731 1.56005 1.43307 1.27444 1.10116 1.34801 1.19328 0.94022 0.96646 1.37963 0.89123 1.25472 0.95434 0.99933 0.95051 1.69900 1.03620 1.36773 1.38335 0.86210 0.78078 0.83125 0.78986 1.20131 1.20788 1.19142 1.21069 0.91897 1.02873 0.83600 1.21909 0.95322 1.05207 0.93825 1.24097 0.90362 0.72928 0.81782 1.90657 1.26438 1.42617 1.79465 1.86538 1.41347 1.80642 1.19853 1.23169 0.88392 1.02183 0.92164 1.22316 0.89958 0.98869 1.02291 0.91550 0.90446 0.91477 0.91410 0.91328 0.91298 0.90569 0.90889 0.91271 0.91770 0.87552 0.91496 0.88583 0.87654 0.92174 0.88619 0.92165 0.91189 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.64 10.22 -39.24 -0.40 -5.04 16 4 C 0.47 7.09 7.26 36.01 0.26 7.35 16 5 O -0.50 -9.19 15.50 -18.75 -0.29 -9.48 16 6 C -0.09 -1.22 3.39 -89.78 -0.30 -1.53 16 7 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 8 C -0.11 -1.40 6.28 -24.97 -0.16 -1.56 16 9 C -0.10 -1.56 6.20 -25.50 -0.16 -1.72 16 10 C -0.10 -1.81 2.45 -90.65 -0.22 -2.03 16 11 H 0.10 1.94 7.04 -51.93 -0.37 1.57 16 12 C 0.48 11.21 6.54 -10.99 -0.07 11.14 16 13 O -0.60 -15.51 15.12 5.55 0.08 -15.42 16 14 N -0.44 -10.44 2.49 -114.82 -0.29 -10.73 16 15 C -0.35 -8.25 8.09 -14.93 -0.12 -8.37 16 16 H 0.09 1.97 7.10 -52.49 -0.37 1.60 16 17 C 0.05 1.18 4.94 -17.47 -0.09 1.09 16 18 N -0.85 -22.22 11.71 55.50 0.65 -21.57 16 19 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 C 0.13 3.08 4.33 -4.04 -0.02 3.06 16 24 C -0.12 -2.42 6.13 -27.89 -0.17 -2.59 16 25 C 0.47 8.92 7.96 36.00 0.29 9.21 16 26 O -0.50 -11.05 15.73 -18.76 -0.30 -11.34 16 27 O -0.37 -5.96 10.57 -39.25 -0.41 -6.37 16 28 C 0.03 0.43 10.56 101.05 1.07 1.50 16 29 C -0.10 -1.71 5.35 -25.07 -0.13 -1.84 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 34 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.12 7.67 -51.93 -0.40 0.73 16 39 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 40 H 0.11 2.75 5.75 -51.93 -0.30 2.45 16 41 H 0.07 1.73 7.33 -51.93 -0.38 1.35 16 42 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.11 1.93 8.14 -51.92 -0.42 1.50 16 44 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.10 2.07 6.14 -51.93 -0.32 1.75 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -31.74 399.53 -6.78 -38.52 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.60 Total: 8.11 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 0.78 Total: 13.86 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.36 Total: -32.30 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.32 Total: -47.66 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.74 -6.78 -38.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871338623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.982 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds