Wall clock time and date at job start Wed Apr 1 2020 01:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.47149 * 2 1 4 4 C 1.34224 * 117.00243 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00017 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.66987 * 59.30706 * 6 4 3 8 8 C 1.54886 * 110.75714 * 296.06813 * 6 4 3 9 9 C 1.54467 * 104.10019 * 203.89295 * 8 6 4 10 10 C 1.53880 * 106.68631 * 23.34216 * 9 8 6 11 11 H 1.08995 * 110.03162 * 240.87475 * 10 9 8 12 12 C 1.50698 * 110.03048 * 119.43963 * 10 9 8 13 13 O 1.21289 * 120.00610 * 266.23613 * 12 10 9 14 14 N 1.34778 * 119.99861 * 86.23663 * 12 10 9 15 15 C 1.37103 * 119.99908 * 4.20289 * 14 12 10 16 16 H 1.07997 * 119.99765 * 318.50937 * 15 14 12 17 17 C 1.38949 * 120.00056 * 138.51571 * 15 14 12 18 18 N 1.31406 * 120.00003 * 339.35894 * 17 15 14 19 19 Si 1.86799 * 119.99845 * 159.36779 * 17 15 14 20 20 H 1.48501 * 109.47657 * 89.99559 * 19 17 15 21 21 H 1.48502 * 109.47014 * 210.00079 * 19 17 15 22 22 H 1.48501 * 109.47202 * 329.99364 * 19 17 15 23 23 C 1.46501 * 120.00239 * 184.20090 * 14 12 10 24 24 C 1.52993 * 109.47208 * 89.99814 * 23 14 12 25 25 C 1.50697 * 109.47370 * 179.97438 * 24 23 14 26 26 O 1.20834 * 119.99503 * 0.02562 * 25 24 23 27 27 O 1.34227 * 120.00421 * 180.02562 * 25 24 23 28 28 C 1.45205 * 117.00017 * 180.02562 * 27 25 24 29 29 C 1.54267 * 106.59432 * 0.16202 * 10 9 8 30 30 H 1.08998 * 109.47001 * 299.99986 * 1 2 3 31 31 H 1.09002 * 109.46857 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46899 * 60.00222 * 1 2 3 33 33 H 1.08998 * 109.47338 * 119.99502 * 2 1 3 34 34 H 1.08999 * 109.47382 * 240.00395 * 2 1 3 35 35 H 1.08994 * 110.48793 * 322.41879 * 8 6 4 36 36 H 1.09001 * 110.48499 * 85.06539 * 8 6 4 37 37 H 1.09006 * 109.86064 * 264.10537 * 9 8 6 38 38 H 1.09003 * 110.16635 * 142.75401 * 9 8 6 39 39 H 0.96996 * 119.99906 * 185.03873 * 18 17 15 40 40 H 1.08999 * 109.46819 * 210.00198 * 23 14 12 41 41 H 1.08996 * 109.46779 * 329.99963 * 23 14 12 42 42 H 1.08995 * 109.47267 * 300.00372 * 24 23 14 43 43 H 1.09009 * 109.46988 * 60.00042 * 24 23 14 44 44 H 1.08994 * 109.47249 * 59.99966 * 28 27 25 45 45 H 1.09003 * 109.46845 * 180.02562 * 28 27 25 46 46 H 1.09005 * 109.46795 * 299.99396 * 28 27 25 47 47 H 1.08997 * 110.48199 * 217.71076 * 29 10 9 48 48 H 1.08994 * 110.48791 * 95.06650 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5862 3.4925 0.8765 8 6 3.5429 3.6872 -1.3016 9 6 4.6414 4.7633 -1.4484 10 6 5.8625 4.2586 -0.6596 11 1 6.1059 4.9584 0.1397 12 6 7.0427 4.0975 -1.5827 13 8 7.2710 3.0212 -2.0932 14 7 7.8446 5.1495 -1.8412 15 6 7.6385 6.3427 -1.1983 16 1 6.6339 6.7123 -1.0548 17 6 8.7220 7.0767 -0.7315 18 7 9.8781 6.4854 -0.5296 19 14 8.5353 8.9038 -0.3907 20 1 8.1102 9.1038 1.0180 21 1 9.8353 9.5849 -0.6170 22 1 7.5118 9.4753 -1.3024 23 6 8.9365 5.0179 -2.8089 24 6 8.4291 5.3887 -4.2039 25 6 9.5525 5.2539 -5.1993 26 8 10.6467 4.8974 -4.8308 27 8 9.3377 5.5300 -6.4952 28 6 10.4653 5.3778 -7.3973 29 6 5.4676 2.8917 -0.0634 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.5614 3.0068 -2.1529 36 1 2.5612 4.1507 -1.2037 37 1 4.2923 5.7081 -1.0317 38 1 4.9028 4.8926 -2.4987 39 1 10.6134 6.9800 -0.1352 40 1 9.7519 5.6851 -2.5296 41 1 9.2950 3.9886 -2.8144 42 1 7.6138 4.7215 -4.4831 43 1 8.0706 6.4181 -4.1983 44 1 10.8144 4.3456 -7.3717 45 1 10.1563 5.6322 -8.4112 46 1 11.2717 6.0420 -7.0862 47 1 5.8870 2.7760 0.9360 48 1 5.7989 2.0819 -0.7133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871338623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:08 Heat of formation + Delta-G solvation = -239.187581 kcal Electronic energy + Delta-G solvation = -30560.464511 eV Core-core repulsion = 26193.578543 eV Total energy + Delta-G solvation = -4366.885967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79170 -41.56349 -40.69616 -38.39817 -37.66930 -37.36310 -36.67649 -33.85127 -32.84323 -32.46852 -30.53475 -29.72795 -28.66727 -26.88036 -25.68469 -24.55165 -23.12268 -22.31082 -21.63168 -21.05435 -20.56738 -19.16341 -18.82082 -18.14724 -17.85288 -17.72222 -17.61111 -17.49052 -17.14020 -16.63581 -16.16145 -15.97098 -15.35680 -15.10063 -15.02076 -14.77785 -14.42020 -14.28630 -14.17973 -13.83475 -13.67468 -13.60311 -13.16960 -13.15077 -12.90182 -12.86647 -12.72031 -12.67321 -12.53375 -12.41701 -12.12683 -12.09167 -12.05601 -11.95524 -11.81041 -11.71761 -11.62514 -11.51556 -11.46235 -11.31187 -10.98390 -10.27240 -9.43369 -8.26251 -6.05821 1.10491 1.15991 1.46679 1.54673 1.63469 1.65779 1.66234 2.06178 2.38616 2.99754 3.08738 3.41888 3.59226 3.80137 3.89862 4.01365 4.09558 4.10896 4.16777 4.23339 4.29492 4.29800 4.36664 4.41804 4.48386 4.52639 4.56635 4.57805 4.67226 4.70620 4.81656 4.87925 4.95168 4.98350 5.04467 5.11216 5.17717 5.23672 5.33080 5.35441 5.37877 5.45937 5.48345 5.58450 6.08068 6.44144 6.67579 6.73923 7.17406 7.60770 8.05860 8.78530 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003021 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.201515 B = 9265.821657 C =10995.883315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.353 6.353 4 C 0.472 3.528 5 O -0.545 6.545 6 C -0.078 4.078 7 H 0.150 0.850 8 C -0.096 4.096 9 C -0.097 4.097 10 C -0.092 4.092 11 H 0.104 0.896 12 C 0.469 3.531 13 O -0.637 6.637 14 N -0.448 5.448 15 C -0.354 4.354 16 H 0.114 0.886 17 C 0.002 3.998 18 N -0.898 5.898 19 Si 0.980 3.020 20 H -0.269 1.269 21 H -0.295 1.295 22 H -0.248 1.248 23 C 0.135 3.865 24 C -0.112 4.112 25 C 0.472 3.528 26 O -0.540 6.540 27 O -0.361 6.361 28 C 0.026 3.974 29 C -0.097 4.097 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.269 0.731 40 H 0.083 0.917 41 H 0.030 0.970 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.058 0.942 45 H 0.139 0.861 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.573 0.023 -3.469 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.269 6.269 4 C 0.317 3.683 5 O -0.434 6.434 6 C -0.097 4.097 7 H 0.167 0.833 8 C -0.134 4.134 9 C -0.135 4.135 10 C -0.114 4.114 11 H 0.122 0.878 12 C 0.260 3.740 13 O -0.524 6.524 14 N -0.165 5.165 15 C -0.481 4.481 16 H 0.132 0.868 17 C -0.201 4.201 18 N -0.535 5.535 19 Si 0.804 3.196 20 H -0.194 1.194 21 H -0.221 1.221 22 H -0.171 1.171 23 C 0.010 3.990 24 C -0.150 4.150 25 C 0.316 3.684 26 O -0.430 6.430 27 O -0.277 6.277 28 C -0.067 4.067 29 C -0.136 4.136 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.048 0.952 42 H 0.121 0.879 43 H 0.142 0.858 44 H 0.077 0.923 45 H 0.157 0.843 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.702 -0.835 -3.656 16.144 hybrid contribution 1.417 0.041 0.226 1.436 sum -14.285 -0.795 -3.430 14.712 Atomic orbital electron populations 1.21808 0.89875 1.04349 1.03955 1.23307 0.97439 0.79525 1.02214 1.86512 1.23471 1.33386 1.83577 1.24011 0.80666 0.92805 0.70842 1.90669 1.61429 1.44499 1.46845 1.22114 0.94603 0.89110 1.03853 0.83291 1.22339 1.00385 0.96657 0.94008 1.22015 0.91996 0.99678 0.99814 1.21657 0.93512 0.98001 0.98183 0.87803 1.21255 0.86749 0.82647 0.83361 1.90508 1.76212 1.28123 1.57605 1.43561 1.27152 1.10764 1.35039 1.19813 0.95029 0.96127 1.37143 0.86813 1.26381 0.94870 1.04092 0.94761 1.70056 1.04732 1.38559 1.40111 0.85125 0.77721 0.77449 0.79332 1.19406 1.22086 1.17132 1.20801 0.91900 0.99969 0.86283 1.21658 0.95451 1.06236 0.91702 1.23899 0.89442 0.72212 0.82849 1.90648 1.27674 1.44357 1.80282 1.86506 1.42851 1.79787 1.18573 1.23587 0.87600 1.02381 0.93128 1.22193 0.93305 0.96967 1.01087 0.90869 0.88348 0.91098 0.91540 0.92049 0.92775 0.86510 0.87739 0.92548 0.92102 0.89932 0.95158 0.87880 0.85820 0.92295 0.84250 0.92109 0.91324 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.05 0.95 6.19 71.98 0.45 1.40 16 3 O -0.35 -8.41 10.22 -51.35 -0.52 -8.94 16 4 C 0.47 13.86 7.26 71.24 0.52 14.38 16 5 O -0.54 -20.43 15.50 21.97 0.34 -20.09 16 6 C -0.08 -2.04 3.39 -10.25 -0.03 -2.07 16 7 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 8 C -0.10 -2.27 6.28 31.74 0.20 -2.07 16 9 C -0.10 -2.70 6.20 31.39 0.19 -2.51 16 10 C -0.09 -3.40 2.45 -10.81 -0.03 -3.43 16 11 H 0.10 3.79 7.04 -2.39 -0.02 3.78 16 12 C 0.47 22.49 6.54 87.66 0.57 23.06 16 13 O -0.64 -34.97 15.12 -3.06 -0.05 -35.02 16 14 N -0.45 -21.86 2.49 -635.56 -1.58 -23.44 16 15 C -0.35 -16.43 8.09 84.04 0.68 -15.75 16 16 H 0.11 4.67 7.10 -2.91 -0.02 4.64 16 17 C 0.00 0.12 4.94 84.93 0.42 0.54 16 18 N -0.90 -48.38 11.71 21.66 0.25 -48.13 16 19 Si 0.98 37.13 29.60 68.60 2.03 39.16 16 20 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 21 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 23 C 0.14 6.73 4.33 86.38 0.37 7.11 16 24 C -0.11 -4.45 6.13 29.84 0.18 -4.26 16 25 C 0.47 18.34 7.96 71.23 0.57 18.91 16 26 O -0.54 -24.52 15.73 21.94 0.35 -24.18 16 27 O -0.36 -11.33 10.57 -51.39 -0.54 -11.87 16 28 C 0.03 0.60 10.56 113.37 1.20 1.80 16 29 C -0.10 -3.49 5.35 31.67 0.17 -3.32 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 34 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 35 H 0.05 1.44 8.04 -2.39 -0.02 1.42 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.06 1.73 7.67 -2.39 -0.02 1.72 16 39 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 40 H 0.08 4.52 5.75 -2.39 -0.01 4.50 16 41 H 0.03 1.68 7.33 -2.39 -0.02 1.66 16 42 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 43 H 0.12 4.44 8.14 -2.38 -0.02 4.42 16 44 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 45 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.06 2.57 6.14 -2.39 -0.01 2.55 16 Total: -1.00 -74.37 399.53 7.43 -66.94 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.96 Total: 32.72 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 6.20 Total: 32.83 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -1.33 Total: -71.56 kcal Atomic # 8 Polarization: -99.66 SS G_CDS: -0.43 Total: -100.09 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -74.37 7.43 -66.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871338623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.244 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds