Wall clock time and date at job start Wed Apr 1 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47090 * 2 1 4 4 C 1.34231 * 116.99963 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99701 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00003 * 180.02562 * 4 3 2 7 7 C 1.53000 * 112.85078 * 302.53242 * 6 4 3 8 8 C 1.50698 * 109.47133 * 286.43367 * 7 6 4 9 9 O 1.21297 * 120.00162 * 359.79226 * 8 7 6 10 10 N 1.34773 * 119.99994 * 179.79394 * 8 7 6 11 11 C 1.37097 * 120.00039 * 359.97438 * 10 8 7 12 12 H 1.08001 * 120.00400 * 321.37076 * 11 10 8 13 13 C 1.38950 * 119.99792 * 141.36306 * 11 10 8 14 14 N 1.31411 * 119.99865 * 342.25223 * 13 11 10 15 15 Si 1.86802 * 119.99949 * 162.25209 * 13 11 10 16 16 H 1.48496 * 109.47144 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46852 * 120.00234 * 15 13 11 18 18 H 1.48498 * 109.47280 * 240.00128 * 15 13 11 19 19 C 1.46502 * 119.99868 * 180.02562 * 10 8 7 20 20 C 1.53000 * 109.47285 * 83.48653 * 19 10 8 21 21 C 1.50698 * 109.46981 * 179.97438 * 20 19 10 22 22 O 1.20827 * 120.00192 * 359.97438 * 21 20 19 23 23 O 1.34228 * 120.00019 * 179.97438 * 21 20 19 24 24 C 1.45202 * 117.00007 * 179.97438 * 23 21 20 25 25 C 1.53779 * 113.68750 * 73.80396 * 6 4 3 26 26 C 1.53778 * 87.08369 * 89.12565 * 25 6 4 27 27 C 1.53777 * 87.08023 * 25.43009 * 26 25 6 28 28 H 1.09004 * 109.46825 * 59.99961 * 1 2 3 29 29 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46983 * 300.00040 * 1 2 3 31 31 H 1.09004 * 109.46813 * 240.00170 * 2 1 3 32 32 H 1.08997 * 109.46955 * 120.00381 * 2 1 3 33 33 H 1.08996 * 109.46791 * 166.42873 * 7 6 4 34 34 H 1.09003 * 109.46838 * 46.43671 * 7 6 4 35 35 H 0.97006 * 120.00034 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.46875 * 203.48119 * 19 10 8 37 37 H 1.08991 * 109.46870 * 323.47680 * 19 10 8 38 38 H 1.09004 * 109.46728 * 299.99556 * 20 19 10 39 39 H 1.08992 * 109.47490 * 59.99941 * 20 19 10 40 40 H 1.09002 * 109.47425 * 59.99896 * 24 23 21 41 41 H 1.09003 * 109.47476 * 180.02562 * 24 23 21 42 42 H 1.09007 * 109.47043 * 300.00279 * 24 23 21 43 43 H 1.08997 * 113.61047 * 203.67352 * 25 6 4 44 44 H 1.08999 * 113.61528 * 334.57129 * 25 6 4 45 45 H 1.08993 * 113.61281 * 270.88214 * 26 25 6 46 46 H 1.09000 * 113.61725 * 139.97679 * 26 25 6 47 47 H 1.09005 * 113.61758 * 220.01997 * 27 26 25 48 48 H 1.09005 * 113.61732 * 89.11601 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.4466 3.7769 -1.1880 8 6 4.1331 3.3038 -2.4433 9 8 4.9266 2.3878 -2.3922 10 7 3.8653 3.8983 -3.6228 11 6 2.9680 4.9333 -3.6807 12 1 2.0732 4.9067 -3.0765 13 6 3.2099 6.0165 -4.5166 14 7 4.4211 6.2324 -4.9784 15 14 1.8134 7.1658 -4.9838 16 1 0.5578 6.7078 -4.3368 17 1 2.1316 8.5425 -4.5269 18 1 1.6410 7.1613 -6.4588 19 6 4.5322 3.4379 -4.8432 20 6 3.7817 2.2314 -5.4105 21 6 4.4674 1.7582 -6.6662 22 8 5.4548 2.3279 -7.0667 23 8 3.9812 0.7039 -7.3399 24 6 4.6925 0.3042 -8.5410 25 6 3.7946 3.6576 1.3528 26 6 5.1533 3.0382 1.7204 27 6 5.4435 2.9740 0.2116 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.6910 4.8246 -1.0129 34 1 2.3678 3.6696 -1.3012 35 1 4.5899 6.9884 -5.5623 36 1 4.5375 4.2416 -5.5796 37 1 5.5578 3.1515 -4.6108 38 1 3.7764 1.4277 -4.6741 39 1 2.7561 2.5179 -5.6430 40 1 5.7186 0.0402 -8.2849 41 1 4.1960 -0.5573 -8.9876 42 1 4.6966 1.1299 -9.2526 43 1 3.8175 4.7444 1.2726 44 1 2.9692 3.2948 1.9654 45 1 5.0734 2.0587 2.1917 46 1 5.8105 3.7178 2.2629 47 1 5.9494 2.0592 -0.0972 48 1 5.9172 3.8740 -0.1807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:12 Heat of formation + Delta-G solvation = -188.029841 kcal Electronic energy + Delta-G solvation = -31624.153346 eV Core-core repulsion = 27259.485745 eV Total energy + Delta-G solvation = -4364.667601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78911 -40.03390 -38.77037 -37.74983 -36.15978 -35.95757 -34.86490 -32.03432 -31.69268 -31.04995 -29.61506 -27.48783 -25.47898 -25.09656 -24.99982 -23.44164 -22.51426 -21.50603 -20.25179 -19.15898 -18.99308 -17.49728 -17.00469 -16.51921 -16.35093 -16.23134 -16.14403 -15.84201 -15.73390 -14.83961 -14.53950 -14.23543 -14.01195 -13.90755 -13.61957 -13.53052 -13.06709 -12.90435 -12.62796 -12.60785 -12.26799 -12.16304 -12.02226 -11.81990 -11.70412 -11.59875 -11.42120 -11.25521 -11.17954 -10.95227 -10.75999 -10.66066 -10.53503 -10.41211 -10.32890 -10.17644 -10.06724 -10.00434 -9.89548 -9.77784 -9.15910 -8.43815 -7.59232 -6.42313 -4.17629 2.63748 2.67867 2.92680 3.05162 3.08144 3.18762 3.21252 3.85754 4.06717 4.49414 4.78248 4.82538 4.91977 4.96809 5.00440 5.06104 5.17020 5.24938 5.28836 5.31331 5.32063 5.36007 5.64409 5.67618 5.76204 5.79638 5.82403 5.86875 5.91396 5.97493 6.02671 6.04967 6.12971 6.29146 6.31247 6.46766 6.51315 6.57649 6.72343 6.74171 6.81604 6.90567 7.29745 7.42532 7.86553 8.18881 8.19340 8.29917 9.01512 9.43170 9.87226 10.59588 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.004381 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.027399 B = 6389.041947 C = 7858.927761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.496 3.504 5 O -0.497 6.497 6 C -0.062 4.062 7 C -0.103 4.103 8 C 0.469 3.531 9 O -0.590 6.590 10 N -0.439 5.439 11 C -0.347 4.347 12 H 0.092 0.908 13 C 0.046 3.954 14 N -0.854 5.854 15 Si 0.912 3.088 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.133 3.867 20 C -0.126 4.126 21 C 0.466 3.534 22 O -0.505 6.505 23 O -0.367 6.367 24 C 0.035 3.965 25 C -0.121 4.121 26 C -0.152 4.152 27 C -0.096 4.096 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.271 0.729 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -6.678 5.682 10.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.338 3.662 5 O -0.382 6.382 6 C -0.063 4.063 7 C -0.143 4.143 8 C 0.258 3.742 9 O -0.474 6.474 10 N -0.158 5.158 11 C -0.475 4.475 12 H 0.109 0.891 13 C -0.162 4.162 14 N -0.489 5.489 15 Si 0.739 3.261 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.205 1.205 19 C 0.009 3.991 20 C -0.165 4.165 21 C 0.309 3.691 22 O -0.392 6.392 23 O -0.284 6.284 24 C -0.059 4.059 25 C -0.158 4.158 26 C -0.189 4.189 27 C -0.133 4.133 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.317 -7.142 5.412 10.420 hybrid contribution -0.646 0.485 -0.726 1.086 sum -5.963 -6.657 4.686 10.091 Atomic orbital electron populations 1.21788 0.92860 1.02606 1.03546 1.22942 0.95159 0.80896 1.02285 1.86496 1.24998 1.31646 1.84424 1.22912 0.79975 0.91765 0.71564 1.90599 1.60395 1.42675 1.44574 1.21382 0.98581 0.89147 0.97195 1.21381 1.01489 1.00224 0.91202 1.20451 0.83730 0.84995 0.85033 1.90608 1.37906 1.32482 1.86454 1.43365 1.38746 1.29957 1.03729 1.19466 1.01775 0.97163 1.29106 0.89070 1.25435 0.96276 0.96933 0.97506 1.69926 1.18960 1.28601 1.31451 0.86108 0.81422 0.79927 0.78691 1.19028 1.20599 1.20529 1.21097 0.94371 0.94100 0.89518 1.21930 1.01744 1.01556 0.91234 1.24084 0.82914 0.76877 0.85195 1.90650 1.25616 1.55185 1.67710 1.86540 1.55856 1.47533 1.38500 1.23166 0.97290 1.00408 0.85037 1.23023 0.98066 1.00732 0.93976 1.23003 0.97154 1.00809 0.97962 1.22746 0.92759 1.04217 0.93593 0.91302 0.90573 0.91644 0.91378 0.91715 0.87929 0.89275 0.91873 0.86930 0.91899 0.88452 0.87963 0.92175 0.88642 0.92169 0.88406 0.91184 0.90584 0.91095 0.89390 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.36 -5.86 10.06 -39.26 -0.39 -6.26 16 4 C 0.50 9.15 6.02 36.01 0.22 9.36 16 5 O -0.50 -10.36 15.63 -18.75 -0.29 -10.65 16 6 C -0.06 -1.06 0.70 -154.85 -0.11 -1.16 16 7 C -0.10 -1.94 3.91 -27.88 -0.11 -2.05 16 8 C 0.47 10.80 7.26 -10.99 -0.08 10.72 16 9 O -0.59 -14.82 13.96 5.54 0.08 -14.74 16 10 N -0.44 -10.53 2.53 -114.81 -0.29 -10.82 16 11 C -0.35 -8.25 8.60 -14.93 -0.13 -8.38 16 12 H 0.09 2.05 7.09 -52.49 -0.37 1.67 16 13 C 0.05 1.10 4.98 -17.47 -0.09 1.01 16 14 N -0.85 -22.12 11.41 55.50 0.63 -21.49 16 15 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 C 0.13 3.19 4.14 -4.04 -0.02 3.18 16 20 C -0.13 -2.56 6.08 -27.88 -0.17 -2.73 16 21 C 0.47 9.22 7.96 36.00 0.29 9.50 16 22 O -0.50 -11.24 15.73 -18.75 -0.29 -11.53 16 23 O -0.37 -6.19 10.57 -39.25 -0.41 -6.61 16 24 C 0.04 0.45 10.56 101.05 1.07 1.52 16 25 C -0.12 -1.60 7.21 -25.92 -0.19 -1.79 16 26 C -0.15 -2.06 7.80 -25.92 -0.20 -2.27 16 27 C -0.10 -1.65 5.45 -25.92 -0.14 -1.80 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.10 1.85 7.85 -51.93 -0.41 1.44 16 34 H 0.09 1.61 7.51 -51.93 -0.39 1.22 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.11 2.93 5.52 -51.93 -0.29 2.64 16 37 H 0.06 1.63 7.58 -51.93 -0.39 1.24 16 38 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 40 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 43 H 0.10 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 1.75 7.13 -51.93 -0.37 1.38 16 48 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -31.28 400.75 -6.70 -37.97 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.68 Total: 9.45 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 0.95 Total: 15.06 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.34 Total: -32.31 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -1.32 Total: -49.79 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.28 -6.70 -37.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.055 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds