Wall clock time and date at job start Wed Apr 1 2020 01:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47090 * 2 1 4 4 C 1.34231 * 116.99963 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99701 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00003 * 180.02562 * 4 3 2 7 7 C 1.53000 * 112.85078 * 302.53242 * 6 4 3 8 8 C 1.50698 * 109.47133 * 286.43367 * 7 6 4 9 9 O 1.21297 * 120.00162 * 359.79226 * 8 7 6 10 10 N 1.34773 * 119.99994 * 179.79394 * 8 7 6 11 11 C 1.37097 * 120.00039 * 359.97438 * 10 8 7 12 12 H 1.08001 * 120.00400 * 321.37076 * 11 10 8 13 13 C 1.38950 * 119.99792 * 141.36306 * 11 10 8 14 14 N 1.31411 * 119.99865 * 342.25223 * 13 11 10 15 15 Si 1.86802 * 119.99949 * 162.25209 * 13 11 10 16 16 H 1.48496 * 109.47144 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46852 * 120.00234 * 15 13 11 18 18 H 1.48498 * 109.47280 * 240.00128 * 15 13 11 19 19 C 1.46502 * 119.99868 * 180.02562 * 10 8 7 20 20 C 1.53000 * 109.47285 * 83.48653 * 19 10 8 21 21 C 1.50698 * 109.46981 * 179.97438 * 20 19 10 22 22 O 1.20827 * 120.00192 * 359.97438 * 21 20 19 23 23 O 1.34228 * 120.00019 * 179.97438 * 21 20 19 24 24 C 1.45202 * 117.00007 * 179.97438 * 23 21 20 25 25 C 1.53779 * 113.68750 * 73.80396 * 6 4 3 26 26 C 1.53778 * 87.08369 * 89.12565 * 25 6 4 27 27 C 1.53777 * 87.08023 * 25.43009 * 26 25 6 28 28 H 1.09004 * 109.46825 * 59.99961 * 1 2 3 29 29 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46983 * 300.00040 * 1 2 3 31 31 H 1.09004 * 109.46813 * 240.00170 * 2 1 3 32 32 H 1.08997 * 109.46955 * 120.00381 * 2 1 3 33 33 H 1.08996 * 109.46791 * 166.42873 * 7 6 4 34 34 H 1.09003 * 109.46838 * 46.43671 * 7 6 4 35 35 H 0.97006 * 120.00034 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.46875 * 203.48119 * 19 10 8 37 37 H 1.08991 * 109.46870 * 323.47680 * 19 10 8 38 38 H 1.09004 * 109.46728 * 299.99556 * 20 19 10 39 39 H 1.08992 * 109.47490 * 59.99941 * 20 19 10 40 40 H 1.09002 * 109.47425 * 59.99896 * 24 23 21 41 41 H 1.09003 * 109.47476 * 180.02562 * 24 23 21 42 42 H 1.09007 * 109.47043 * 300.00279 * 24 23 21 43 43 H 1.08997 * 113.61047 * 203.67352 * 25 6 4 44 44 H 1.08999 * 113.61528 * 334.57129 * 25 6 4 45 45 H 1.08993 * 113.61281 * 270.88214 * 26 25 6 46 46 H 1.09000 * 113.61725 * 139.97679 * 26 25 6 47 47 H 1.09005 * 113.61758 * 220.01997 * 27 26 25 48 48 H 1.09005 * 113.61732 * 89.11601 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.4466 3.7769 -1.1880 8 6 4.1331 3.3038 -2.4433 9 8 4.9266 2.3878 -2.3922 10 7 3.8653 3.8983 -3.6228 11 6 2.9680 4.9333 -3.6807 12 1 2.0732 4.9067 -3.0765 13 6 3.2099 6.0165 -4.5166 14 7 4.4211 6.2324 -4.9784 15 14 1.8134 7.1658 -4.9838 16 1 0.5578 6.7078 -4.3368 17 1 2.1316 8.5425 -4.5269 18 1 1.6410 7.1613 -6.4588 19 6 4.5322 3.4379 -4.8432 20 6 3.7817 2.2314 -5.4105 21 6 4.4674 1.7582 -6.6662 22 8 5.4548 2.3279 -7.0667 23 8 3.9812 0.7039 -7.3399 24 6 4.6925 0.3042 -8.5410 25 6 3.7946 3.6576 1.3528 26 6 5.1533 3.0382 1.7204 27 6 5.4435 2.9740 0.2116 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.6910 4.8246 -1.0129 34 1 2.3678 3.6696 -1.3012 35 1 4.5899 6.9884 -5.5623 36 1 4.5375 4.2416 -5.5796 37 1 5.5578 3.1515 -4.6108 38 1 3.7764 1.4277 -4.6741 39 1 2.7561 2.5179 -5.6430 40 1 5.7186 0.0402 -8.2849 41 1 4.1960 -0.5573 -8.9876 42 1 4.6966 1.1299 -9.2526 43 1 3.8175 4.7444 1.2726 44 1 2.9692 3.2948 1.9654 45 1 5.0734 2.0587 2.1917 46 1 5.8105 3.7178 2.2629 47 1 5.9494 2.0592 -0.0972 48 1 5.9172 3.8740 -0.1807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:11 Heat of formation + Delta-G solvation = -204.834434 kcal Electronic energy + Delta-G solvation = -31624.882047 eV Core-core repulsion = 27259.485745 eV Total energy + Delta-G solvation = -4365.396303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17912 -41.59094 -40.40430 -39.16080 -37.68049 -37.35958 -36.71650 -33.85585 -32.90724 -32.57757 -31.08563 -28.74051 -26.90558 -26.75665 -26.36969 -24.87146 -23.78780 -22.74261 -21.82310 -20.97189 -20.30465 -19.14626 -18.50454 -18.03822 -17.88614 -17.68164 -17.60268 -17.39616 -17.19855 -16.37819 -16.03485 -15.75011 -15.60870 -15.25005 -15.06035 -14.80701 -14.54651 -14.24677 -14.09379 -13.86014 -13.68236 -13.56380 -13.28319 -13.20057 -12.99762 -12.93193 -12.87821 -12.70804 -12.65861 -12.49297 -12.41740 -12.05889 -11.95143 -11.88394 -11.83381 -11.65439 -11.50071 -11.42013 -11.28401 -11.10445 -10.99850 -10.26882 -9.49356 -8.26640 -6.08089 1.07462 1.22190 1.45599 1.53016 1.62089 1.65520 1.69299 2.07108 2.36438 2.91518 3.09678 3.50181 3.60080 3.74040 3.81307 3.89948 3.99924 4.02999 4.07734 4.11551 4.21010 4.27097 4.27667 4.33437 4.46964 4.54630 4.56747 4.65641 4.72889 4.80091 4.82753 4.88805 4.94046 4.95195 5.02794 5.05408 5.15548 5.21629 5.22173 5.26363 5.37885 5.41602 5.53277 5.54689 6.02059 6.42303 6.64697 6.81476 7.15598 7.58897 8.03524 8.76552 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.004381 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.027399 B = 6389.041947 C = 7858.927761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.494 3.506 5 O -0.531 6.531 6 C -0.074 4.074 7 C -0.092 4.092 8 C 0.457 3.543 9 O -0.618 6.618 10 N -0.450 5.450 11 C -0.353 4.353 12 H 0.109 0.891 13 C 0.003 3.997 14 N -0.895 5.895 15 Si 0.981 3.019 16 H -0.247 1.247 17 H -0.281 1.281 18 H -0.286 1.286 19 C 0.141 3.859 20 C -0.115 4.115 21 C 0.473 3.527 22 O -0.536 6.536 23 O -0.363 6.363 24 C 0.026 3.974 25 C -0.101 4.101 26 C -0.136 4.136 27 C -0.106 4.106 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.270 0.730 36 H 0.092 0.908 37 H 0.028 0.972 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.058 0.942 41 H 0.139 0.861 42 H 0.062 0.938 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 -6.399 6.756 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.275 6.275 4 C 0.338 3.662 5 O -0.420 6.420 6 C -0.075 4.075 7 C -0.132 4.132 8 C 0.248 3.752 9 O -0.505 6.505 10 N -0.169 5.169 11 C -0.480 4.480 12 H 0.126 0.874 13 C -0.200 4.200 14 N -0.532 5.532 15 Si 0.804 3.196 16 H -0.170 1.170 17 H -0.207 1.207 18 H -0.212 1.212 19 C 0.016 3.984 20 C -0.154 4.154 21 C 0.317 3.683 22 O -0.426 6.426 23 O -0.280 6.280 24 C -0.067 4.067 25 C -0.138 4.138 26 C -0.174 4.174 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.046 0.954 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.077 0.923 41 H 0.157 0.843 42 H 0.081 0.919 43 H 0.138 0.862 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.068 0.932 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.241 -6.882 6.496 12.549 hybrid contribution 0.306 0.264 -1.143 1.212 sum -7.935 -6.618 5.353 11.637 Atomic orbital electron populations 1.21809 0.89775 1.04443 1.03872 1.23286 0.97526 0.79455 1.01984 1.86489 1.23704 1.33490 1.83827 1.23197 0.80479 0.91888 0.70657 1.90580 1.61295 1.43825 1.46306 1.21554 0.98246 0.88967 0.98758 1.21340 1.01543 1.00803 0.89508 1.21253 0.83515 0.84440 0.86035 1.90594 1.39214 1.33723 1.86986 1.43604 1.38893 1.30410 1.03990 1.19865 1.01997 0.96880 1.29256 0.87363 1.26289 0.98181 0.98394 0.97179 1.70062 1.21224 1.29446 1.32467 0.85058 0.79063 0.77627 0.77805 1.17050 1.20664 1.21203 1.20809 0.93316 0.94740 0.89524 1.21685 1.02030 0.99976 0.91663 1.23836 0.82195 0.77238 0.85038 1.90640 1.26922 1.56449 1.68572 1.86507 1.55901 1.45852 1.39715 1.23595 0.97706 1.02025 0.83367 1.23035 0.98281 1.01597 0.90883 1.22920 0.97884 1.01414 0.95154 1.22715 0.92771 1.01987 0.96928 0.91732 0.87988 0.90471 0.92918 0.90934 0.86867 0.88121 0.92058 0.88992 0.95382 0.88717 0.86274 0.92269 0.84301 0.91935 0.86179 0.89258 0.90932 0.88437 0.93198 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.29 71.98 0.74 -1.71 16 2 C 0.05 1.30 6.19 71.98 0.45 1.75 16 3 O -0.36 -11.35 10.06 -51.43 -0.52 -11.87 16 4 C 0.49 18.19 6.02 71.24 0.43 18.62 16 5 O -0.53 -22.82 15.63 21.96 0.34 -22.47 16 6 C -0.07 -2.48 0.70 -52.40 -0.04 -2.52 16 7 C -0.09 -3.41 3.91 29.85 0.12 -3.29 16 8 C 0.46 21.54 7.26 87.66 0.64 22.18 16 9 O -0.62 -32.60 13.96 -3.08 -0.04 -32.64 16 10 N -0.45 -22.05 2.53 -635.54 -1.61 -23.66 16 11 C -0.35 -16.60 8.60 84.04 0.72 -15.88 16 12 H 0.11 4.64 7.09 -2.91 -0.02 4.62 16 13 C 0.00 0.13 4.98 84.93 0.42 0.56 16 14 N -0.90 -47.47 11.41 21.66 0.25 -47.22 16 15 Si 0.98 37.43 29.59 68.60 2.03 39.46 16 16 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 17 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 18 H -0.29 -11.14 7.11 99.48 0.71 -10.44 16 19 C 0.14 7.06 4.14 86.38 0.36 7.41 16 20 C -0.11 -4.79 6.08 29.85 0.18 -4.61 16 21 C 0.47 19.03 7.96 71.24 0.57 19.59 16 22 O -0.54 -24.70 15.73 21.96 0.35 -24.35 16 23 O -0.36 -11.97 10.57 -51.40 -0.54 -12.51 16 24 C 0.03 0.63 10.56 113.37 1.20 1.82 16 25 C -0.10 -2.39 7.21 31.12 0.22 -2.16 16 26 C -0.14 -3.48 7.80 31.12 0.24 -3.23 16 27 C -0.11 -3.74 5.45 31.12 0.17 -3.57 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.50 8.13 -2.38 -0.02 1.48 16 32 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 33 H 0.11 3.92 7.85 -2.39 -0.02 3.90 16 34 H 0.10 3.46 7.51 -2.39 -0.02 3.45 16 35 H 0.27 13.63 8.31 -92.70 -0.77 12.86 16 36 H 0.09 5.02 5.52 -2.39 -0.01 5.00 16 37 H 0.03 1.55 7.58 -2.39 -0.02 1.53 16 38 H 0.09 4.00 8.14 -2.39 -0.02 3.98 16 39 H 0.12 4.52 8.14 -2.39 -0.02 4.51 16 40 H 0.06 1.45 8.13 -2.39 -0.02 1.44 16 41 H 0.14 2.14 8.14 -2.39 -0.02 2.13 16 42 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 43 H 0.12 2.35 7.93 -2.39 -0.02 2.33 16 44 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.05 2.11 7.13 -2.38 -0.02 2.09 16 48 H 0.08 2.97 8.10 -2.38 -0.02 2.95 16 Total: -1.00 -71.61 400.75 7.62 -63.99 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.95 Total: 36.30 kcal Atomic # 6 Polarization: 28.56 SS G_CDS: 6.42 Total: 34.97 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -1.36 Total: -70.88 kcal Atomic # 8 Polarization: -103.43 SS G_CDS: -0.41 Total: -103.84 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -71.61 7.62 -63.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.849 kcal (2) G-P(sol) polarization free energy of solvation -71.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds