Wall clock time and date at job start Wed Apr 1 2020 01:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45202 * 109.47062 * 2 1 4 4 C 1.34228 * 117.00221 * 175.08247 * 3 2 1 5 5 O 1.20838 * 119.99738 * 5.11311 * 4 3 2 6 6 C 1.50699 * 120.00375 * 185.11139 * 4 3 2 7 7 C 1.50696 * 110.01592 * 297.66212 * 6 4 3 8 8 O 1.21296 * 119.99983 * 121.35577 * 7 6 4 9 9 N 1.34773 * 120.00006 * 301.35240 * 7 6 4 10 10 C 1.37098 * 120.00048 * 5.58850 * 9 7 6 11 11 H 1.07993 * 120.00223 * 314.71006 * 10 9 7 12 12 C 1.38953 * 119.99739 * 134.70728 * 10 9 7 13 13 N 1.31414 * 119.99998 * 1.92276 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 181.91776 * 12 10 9 15 15 H 1.48505 * 109.46776 * 65.02750 * 14 12 10 16 16 H 1.48500 * 109.47322 * 185.02794 * 14 12 10 17 17 H 1.48494 * 109.47208 * 305.02715 * 14 12 10 18 18 C 1.46505 * 119.99842 * 185.59244 * 9 7 6 19 19 C 1.53000 * 109.46998 * 94.07640 * 18 9 7 20 20 C 1.50706 * 109.46889 * 179.97438 * 19 18 9 21 21 O 1.20823 * 120.00163 * 0.02562 * 20 19 18 22 22 O 1.34232 * 119.99793 * 179.97438 * 20 19 18 23 23 C 1.45200 * 116.99920 * 179.97438 * 22 20 19 24 24 C 1.54262 * 110.03040 * 59.10354 * 6 4 3 25 25 C 1.54890 * 104.19643 * 142.89263 * 24 6 4 26 26 C 1.54882 * 102.74860 * 322.06148 * 25 24 6 27 27 C 1.53873 * 110.03134 * 176.27041 * 6 4 3 28 28 H 1.08996 * 109.47662 * 304.98122 * 1 2 3 29 29 H 1.09005 * 109.47367 * 64.97626 * 1 2 3 30 30 H 1.08999 * 109.47183 * 184.97335 * 1 2 3 31 31 H 1.09001 * 109.47511 * 240.00191 * 2 1 3 32 32 H 1.09003 * 109.47365 * 119.99675 * 2 1 3 33 33 H 0.96998 * 119.99904 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.46972 * 214.07185 * 18 9 7 35 35 H 1.08990 * 109.47220 * 334.07177 * 18 9 7 36 36 H 1.09004 * 109.46888 * 299.99597 * 19 18 9 37 37 H 1.09002 * 109.47700 * 60.00158 * 19 18 9 38 38 H 1.08995 * 109.47221 * 179.97438 * 23 22 20 39 39 H 1.08994 * 109.47471 * 300.00764 * 23 22 20 40 40 H 1.09003 * 109.46702 * 60.00443 * 23 22 20 41 41 H 1.09008 * 110.48887 * 24.21896 * 24 6 4 42 42 H 1.09001 * 110.48890 * 261.57597 * 24 6 4 43 43 H 1.08997 * 110.75965 * 203.73783 * 25 24 6 44 44 H 1.09000 * 110.75361 * 80.37543 * 25 24 6 45 45 H 1.09001 * 110.48920 * 156.62121 * 26 25 24 46 46 H 1.09002 * 110.48218 * 279.12344 * 26 25 24 47 47 H 1.08998 * 110.03131 * 121.43474 * 27 6 4 48 48 H 1.08997 * 110.03647 * 359.97438 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3405 1.5464 0.1025 5 8 4.0800 0.5908 0.0963 6 6 3.9075 2.9372 0.2253 7 6 3.5807 3.7383 -1.0085 8 8 2.9484 4.7690 -0.9126 9 7 3.9910 3.3095 -2.2186 10 6 4.6048 2.0898 -2.3418 11 1 5.3764 1.8006 -1.6438 12 6 4.2339 1.2257 -3.3648 13 7 3.3218 1.5927 -4.2367 14 14 5.0321 -0.4577 -3.5008 15 1 4.6655 -1.2764 -2.3172 16 1 4.5574 -1.1324 -4.7355 17 1 6.5078 -0.3027 -3.5576 18 6 3.7812 4.1469 -3.4023 19 6 5.0323 4.9892 -3.6594 20 6 4.8167 5.8501 -4.8774 21 8 3.7696 5.7959 -5.4778 22 8 5.7875 6.6779 -5.2946 23 6 5.5106 7.4767 -6.4750 24 6 3.3329 3.6335 1.4762 25 6 4.5198 4.4608 2.0293 26 6 5.7309 3.5270 1.7844 27 6 5.4322 2.8694 0.4213 28 1 -0.3634 0.5891 0.8419 29 1 -0.3634 0.4347 -0.9312 30 1 -0.3633 -1.0238 0.0891 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0632 0.9896 -4.9510 34 1 3.5867 3.5119 -4.2667 35 1 2.9283 4.8047 -3.2354 36 1 5.2268 5.6241 -2.7950 37 1 5.8853 4.3314 -3.8263 38 1 6.3751 8.1001 -6.7029 39 1 5.3041 6.8186 -7.3189 40 1 4.6443 8.1116 -6.2889 41 1 3.0087 2.8946 2.2091 42 1 2.5060 4.2887 1.2022 43 1 4.3917 4.6562 3.0940 44 1 4.6324 5.3928 1.4754 45 1 6.6542 4.1043 1.7353 46 1 5.7954 2.7723 2.5684 47 1 5.9357 3.4167 -0.3756 48 1 5.7620 1.8306 0.4280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871348387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:20 Heat of formation + Delta-G solvation = -211.358374 kcal Electronic energy + Delta-G solvation = -32675.889765 eV Core-core repulsion = 28310.210563 eV Total energy + Delta-G solvation = -4365.679202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.56038 -39.98241 -38.64050 -36.80923 -36.11176 -35.72683 -34.86937 -31.96058 -31.44607 -30.90368 -29.11618 -28.28076 -27.39116 -25.10661 -23.63462 -23.40745 -21.60774 -20.88431 -20.16770 -19.86145 -18.79118 -17.88302 -17.30601 -16.45910 -16.22903 -16.17012 -16.06277 -15.73599 -15.32490 -14.81346 -14.48811 -14.25069 -13.76932 -13.60391 -13.51064 -13.35960 -12.93168 -12.81460 -12.59717 -12.52275 -12.15449 -12.07646 -11.77335 -11.59772 -11.38833 -11.25709 -11.19150 -11.03743 -11.00530 -10.87769 -10.78397 -10.55856 -10.52055 -10.40225 -10.37092 -10.27207 -10.00502 -9.98170 -9.90371 -9.56472 -9.11425 -8.56734 -7.57728 -6.32263 -4.27281 2.70240 2.96114 3.05911 3.15104 3.21773 3.24029 3.29901 3.78838 4.10401 4.55360 4.90318 4.93337 5.00026 5.21108 5.25500 5.27344 5.31935 5.32516 5.36459 5.49145 5.62945 5.65293 5.75975 5.80750 5.82882 5.90621 5.97404 5.98186 6.03222 6.10433 6.13596 6.19623 6.25717 6.29743 6.31755 6.48209 6.54360 6.66203 6.75199 6.76439 6.93909 7.15647 7.32225 7.65049 7.89942 8.21823 8.33083 8.53448 9.01231 9.33116 9.76785 10.61122 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.004979 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.887379 B = 5622.245705 C = 6821.114007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.065 3.935 3 O -0.350 6.350 4 C 0.503 3.497 5 O -0.503 6.503 6 C -0.053 4.053 7 C 0.495 3.505 8 O -0.583 6.583 9 N -0.434 5.434 10 C -0.353 4.353 11 H 0.101 0.899 12 C 0.055 3.945 13 N -0.860 5.860 14 Si 0.910 3.090 15 H -0.263 1.263 16 H -0.285 1.285 17 H -0.270 1.270 18 C 0.111 3.889 19 C -0.121 4.121 20 C 0.466 3.534 21 O -0.504 6.504 22 O -0.367 6.367 23 C 0.035 3.965 24 C -0.103 4.103 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.106 4.106 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.272 0.728 34 H 0.137 0.863 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 2.415 5.591 6.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.266 6.266 4 C 0.346 3.654 5 O -0.390 6.390 6 C -0.057 4.057 7 C 0.282 3.718 8 O -0.467 6.467 9 N -0.151 5.151 10 C -0.480 4.480 11 H 0.118 0.882 12 C -0.152 4.152 13 N -0.496 5.496 14 Si 0.736 3.264 15 H -0.188 1.188 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.013 4.013 19 C -0.160 4.160 20 C 0.309 3.691 21 O -0.390 6.390 22 O -0.285 6.285 23 C -0.059 4.059 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.163 4.163 27 C -0.144 4.144 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.148 2.510 5.185 6.148 hybrid contribution 0.409 -1.037 -0.585 1.259 sum 2.557 1.473 4.600 5.465 Atomic orbital electron populations 1.21768 0.93292 1.02151 1.03492 1.22870 0.94863 0.81183 1.02036 1.86510 1.25143 1.31177 1.83806 1.22656 0.80230 0.91421 0.71082 1.90547 1.59617 1.42727 1.46125 1.21029 0.97396 0.90128 0.97188 1.19795 0.80951 0.86401 0.84636 1.90538 1.42762 1.27196 1.86190 1.43299 1.51482 1.16233 1.04109 1.19715 1.20021 0.91287 1.16979 0.88206 1.25509 0.94860 0.99053 0.95782 1.69567 1.29171 1.36192 1.14713 0.86225 0.79632 0.82545 0.77978 1.18776 1.21031 1.19533 1.21619 0.92663 0.93655 0.93346 1.21871 1.04522 0.97330 0.92258 1.24074 0.81259 0.77905 0.85842 1.90649 1.27273 1.64887 1.56226 1.86540 1.45134 1.52035 1.44768 1.23155 1.02267 0.94444 0.86015 1.22305 0.99421 0.98805 0.93569 1.22471 0.94376 0.98716 1.00218 1.22421 0.98218 0.98466 0.97166 1.22239 0.91187 1.03617 0.97338 0.91773 0.91414 0.90880 0.91314 0.92058 0.91744 0.84575 0.91747 0.89100 0.87677 0.88680 0.92168 0.92226 0.91753 0.88774 0.91645 0.90909 0.91561 0.91776 0.90353 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.29 37.15 0.38 -1.66 16 2 C 0.06 1.12 6.21 37.15 0.23 1.35 16 3 O -0.35 -7.32 10.12 -39.25 -0.40 -7.72 16 4 C 0.50 10.80 4.74 36.01 0.17 10.97 16 5 O -0.50 -11.29 13.91 -18.76 -0.26 -11.55 16 6 C -0.05 -1.07 0.56 -155.70 -0.09 -1.16 16 7 C 0.50 11.62 6.22 -10.99 -0.07 11.55 16 8 O -0.58 -14.66 14.89 5.54 0.08 -14.57 16 9 N -0.43 -10.50 2.49 -114.81 -0.29 -10.79 16 10 C -0.35 -8.65 6.36 -14.93 -0.10 -8.74 16 11 H 0.10 2.41 4.86 -52.49 -0.26 2.15 16 12 C 0.05 1.37 5.39 -17.47 -0.09 1.28 16 13 N -0.86 -22.60 10.76 55.50 0.60 -22.00 16 14 Si 0.91 20.25 29.55 -169.99 -5.02 15.23 16 15 H -0.26 -6.02 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 C 0.11 2.64 4.43 -4.04 -0.02 2.63 16 19 C -0.12 -2.40 6.12 -27.88 -0.17 -2.57 16 20 C 0.47 9.03 7.96 36.01 0.29 9.32 16 21 O -0.50 -11.08 15.73 -18.75 -0.29 -11.37 16 22 O -0.37 -6.04 10.57 -39.26 -0.41 -6.46 16 23 C 0.04 0.44 10.56 101.05 1.07 1.51 16 24 C -0.10 -1.77 5.65 -25.07 -0.14 -1.91 16 25 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 26 C -0.13 -1.76 6.83 -25.08 -0.17 -1.93 16 27 C -0.11 -1.89 4.29 -25.61 -0.11 -2.00 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.14 3.59 5.12 -51.93 -0.27 3.32 16 35 H 0.06 1.65 7.20 -51.93 -0.37 1.28 16 36 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 41 H 0.06 1.00 7.85 -51.92 -0.41 0.59 16 42 H 0.09 1.76 6.84 -51.93 -0.36 1.41 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.08 1.44 7.17 -51.93 -0.37 1.07 16 48 H 0.09 1.75 6.06 -51.93 -0.31 1.43 16 LS Contribution 389.19 15.07 5.87 5.87 Total: -1.00 -30.79 389.19 -6.52 -37.31 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.40 Total: 9.33 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 1.01 Total: 16.72 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.31 Total: -32.78 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -1.29 Total: -51.67 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.79 -6.52 -37.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.048 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds