Wall clock time and date at job start Wed Apr 1 2020 01:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40303 * 126.08865 * 2 1 4 4 C 1.31070 * 108.26607 * 180.09960 * 3 2 1 5 5 C 1.39299 * 108.07911 * 0.02562 * 4 3 2 6 6 C 1.34319 * 126.09237 * 180.02562 * 2 1 3 7 7 C 1.50825 * 128.03744 * 359.86644 * 6 2 1 8 8 C 1.53358 * 108.38343 * 196.57694 * 7 6 2 9 9 C 1.53109 * 109.51400 * 310.05421 * 8 7 6 10 10 C 1.50841 * 127.89666 * 179.90480 * 5 4 3 11 11 H 1.08994 * 109.71620 * 76.88472 * 10 5 4 12 12 N 1.46503 * 109.67893 * 316.34588 * 10 5 4 13 13 C 1.34775 * 119.99737 * 86.08527 * 12 10 5 14 14 O 1.21581 * 120.00130 * 359.97438 * 13 12 10 15 15 N 1.34779 * 119.99995 * 179.97438 * 13 12 10 16 16 C 1.39453 * 120.00445 * 174.97565 * 15 13 12 17 17 C 1.38639 * 119.65187 * 185.35919 * 16 15 13 18 18 C 1.40827 * 118.67499 * 180.24775 * 17 16 15 19 19 C 1.41542 * 120.99931 * 179.73343 * 18 17 16 20 20 H 1.07996 * 120.00084 * 151.58487 * 19 18 17 21 21 C 1.40037 * 120.00002 * 331.59039 * 19 18 17 22 22 N 1.30743 * 119.99867 * 350.19515 * 21 19 18 23 23 Si 1.86794 * 119.99979 * 170.19740 * 21 19 18 24 24 H 1.48499 * 109.46928 * 269.99499 * 23 21 19 25 25 H 1.48498 * 109.47380 * 29.99834 * 23 21 19 26 26 H 1.48505 * 109.47139 * 149.99947 * 23 21 19 27 27 C 1.41160 * 118.00432 * 359.46103 * 18 17 16 28 28 C 1.36591 * 119.12929 * 0.27536 * 27 18 17 29 29 N 1.32076 * 121.25647 * 359.97438 * 28 27 18 30 30 H 1.09005 * 109.47424 * 269.95710 * 1 2 3 31 31 H 1.08996 * 109.47360 * 29.95500 * 1 2 3 32 32 H 1.09002 * 109.47396 * 149.95579 * 1 2 3 33 33 H 1.07996 * 125.95903 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.68402 * 76.85413 * 7 6 2 35 35 H 1.09003 * 109.71253 * 316.32116 * 7 6 2 36 36 H 1.09005 * 109.46507 * 190.04018 * 8 7 6 37 37 H 1.09003 * 109.45765 * 70.06878 * 8 7 6 38 38 H 1.09002 * 109.46029 * 310.25853 * 9 8 7 39 39 H 1.08998 * 109.45974 * 190.27690 * 9 8 7 40 40 H 0.97001 * 119.99946 * 266.07509 * 12 10 5 41 41 H 0.97001 * 119.99707 * 354.97767 * 15 13 12 42 42 H 1.07995 * 120.66538 * 0.02562 * 17 16 15 43 43 H 0.96994 * 120.00480 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.43644 * 180.24879 * 27 18 17 45 45 H 1.07997 * 119.37339 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1338 0.0000 4 6 3.5392 0.7326 -0.0022 5 6 3.5454 -0.6603 -0.0042 6 6 2.2562 -1.0854 -0.0005 7 6 1.8438 -2.5361 0.0016 8 6 3.0540 -3.3824 0.4153 9 6 4.2699 -2.9808 -0.4240 10 6 4.7399 -1.5815 -0.0090 11 1 5.1762 -1.6232 0.9889 12 7 5.7373 -1.0911 -0.9635 13 6 6.6418 -0.1690 -0.5788 14 8 6.6297 0.2562 0.5602 15 7 7.5597 0.2818 -1.4567 16 6 8.4278 1.3103 -1.0915 17 6 9.2932 1.8445 -2.0337 18 6 10.1646 2.8788 -1.6413 19 6 11.0722 3.4559 -2.5615 20 1 11.3885 4.4810 -2.4373 21 6 11.5599 2.6976 -3.6330 22 7 11.3336 1.4107 -3.6796 23 14 12.5336 3.5246 -4.9957 24 1 11.6053 3.9778 -6.0625 25 1 13.2622 4.6948 -4.4434 26 1 13.5076 2.5586 -5.5646 27 6 10.1018 3.3268 -0.3041 28 6 9.2117 2.7428 0.5517 29 7 8.4122 1.7709 0.1507 30 1 -0.3634 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5131 32 1 -0.3634 -0.8896 -0.5145 33 1 4.4105 1.3707 -0.0031 34 1 1.5170 -2.8264 -0.9969 35 1 1.0307 -2.6862 0.7120 36 1 2.8324 -4.4372 0.2523 37 1 3.2699 -3.2157 1.4707 38 1 3.9963 -2.9732 -1.4791 39 1 5.0752 -3.6974 -0.2627 40 1 5.7467 -1.4302 -1.8723 41 1 7.6165 -0.1091 -2.3426 42 1 9.3014 1.4725 -3.0475 43 1 11.6711 0.8855 -4.4219 44 1 10.7494 4.1206 0.0379 45 1 9.1606 3.0822 1.5756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871720459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:00 Heat of formation + Delta-G solvation = 87.673662 kcal Electronic energy + Delta-G solvation = -29033.783199 eV Core-core repulsion = 25052.965421 eV Total energy + Delta-G solvation = -3980.817778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58487 -39.67216 -38.09214 -36.78895 -34.43297 -33.99083 -33.64375 -32.91794 -30.46365 -29.72235 -29.29673 -27.93721 -26.67949 -25.93073 -23.57651 -22.12697 -21.91306 -21.58828 -20.69326 -19.95554 -18.89560 -17.87168 -17.60833 -16.97519 -16.12244 -15.72201 -15.28343 -14.99406 -14.75274 -14.50714 -14.25421 -14.14791 -14.13579 -13.76885 -13.53686 -13.30443 -13.13161 -12.96667 -12.74946 -12.65047 -12.54359 -12.27260 -11.98515 -11.46328 -11.38764 -11.20264 -11.17662 -10.90028 -10.87219 -10.51634 -10.22496 -10.08415 -9.67353 -9.48528 -9.33633 -9.22382 -8.77671 -8.24699 -7.88958 -7.65460 -6.96653 -6.70328 -4.57502 1.82587 2.46806 2.75620 2.79301 2.85116 3.04624 3.08153 3.26841 3.29018 3.89264 3.94545 4.29154 4.38637 4.54018 4.56970 4.75470 4.81308 4.85050 4.91384 5.05560 5.11976 5.20321 5.31149 5.37659 5.43583 5.58153 5.72549 5.75169 5.83150 5.95674 6.05636 6.09428 6.18773 6.60343 6.68111 6.78037 6.83579 6.86176 7.01081 7.02061 7.17340 7.37593 7.48904 7.54982 7.78310 7.92442 8.17795 8.48317 8.51853 8.77904 8.81493 9.27529 9.78406 10.15610 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002438 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.206056 B =11483.396173 C =11746.813953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.375 5.375 3 N -0.307 5.307 4 C 0.084 3.916 5 C -0.245 4.245 6 C 0.081 3.919 7 C -0.054 4.054 8 C -0.108 4.108 9 C -0.126 4.126 10 C 0.246 3.754 11 H 0.094 0.906 12 N -0.746 5.746 13 C 0.691 3.309 14 O -0.530 6.530 15 N -0.669 5.669 16 C 0.355 3.645 17 C -0.241 4.241 18 C 0.145 3.855 19 C -0.457 4.457 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.797 5.797 23 Si 0.914 3.086 24 H -0.268 1.268 25 H -0.262 1.262 26 H -0.278 1.278 27 C -0.282 4.282 28 C 0.118 3.882 29 N -0.549 5.549 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.183 0.817 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.390 0.610 41 H 0.403 0.597 42 H 0.128 0.872 43 H 0.280 0.720 44 H 0.101 0.899 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.120 -12.029 0.850 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.156 5.156 3 N -0.127 5.127 4 C -0.101 4.101 5 C -0.258 4.258 6 C -0.048 4.048 7 C -0.093 4.093 8 C -0.147 4.147 9 C -0.164 4.164 10 C 0.139 3.861 11 H 0.112 0.888 12 N -0.402 5.402 13 C 0.391 3.609 14 O -0.401 6.401 15 N -0.317 5.317 16 C 0.129 3.871 17 C -0.267 4.267 18 C 0.136 3.864 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.142 4.142 22 N -0.423 5.423 23 Si 0.738 3.262 24 H -0.193 1.193 25 H -0.186 1.186 26 H -0.203 1.203 27 C -0.306 4.306 28 C -0.035 4.035 29 N -0.268 5.268 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.200 0.800 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.223 0.777 41 H 0.238 0.762 42 H 0.146 0.854 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.667 -11.197 2.418 22.760 hybrid contribution 1.623 -0.223 -2.227 2.764 sum -18.044 -11.420 0.191 21.355 Atomic orbital electron populations 1.21768 0.74895 1.04142 1.03079 1.48228 1.06211 1.03713 1.57472 1.77611 1.01742 1.06929 1.26461 1.23709 0.94783 0.94833 0.96786 1.20321 0.93812 0.94429 1.17202 1.20846 0.90975 0.90478 1.02485 1.20334 0.98972 0.87541 1.02450 1.21485 0.93341 0.99035 1.00814 1.21869 0.98124 0.95908 1.00494 1.18935 0.84164 0.89335 0.93647 0.88786 1.45247 1.33958 1.46106 1.14907 1.16103 0.79478 0.80002 0.85319 1.91019 1.73312 1.58722 1.17012 1.42583 1.34661 1.37748 1.16665 1.17964 0.89664 0.88516 0.90940 1.21549 1.00396 1.05359 0.99364 1.17572 0.88803 0.89233 0.90751 1.19559 1.22702 0.99406 1.07228 0.90116 1.25921 0.95467 0.94511 0.98286 1.69752 1.37155 1.06104 1.29328 0.86225 0.79493 0.79960 0.80519 1.19315 1.18579 1.20277 1.21706 1.06143 1.07540 0.95177 1.21488 0.91847 0.92222 0.97989 1.67227 1.27483 1.16427 1.15625 0.91003 0.89408 0.89890 0.79986 0.89939 0.90392 0.90478 0.90884 0.91208 0.90546 0.77687 0.76234 0.85424 0.90920 0.88072 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.32 59.85 0.68 1.44 16 2 N -0.37 -4.65 4.00 -63.88 -0.26 -4.91 16 3 N -0.31 -5.01 12.59 30.54 0.38 -4.63 16 4 C 0.08 1.42 11.40 -17.48 -0.20 1.22 16 5 C -0.24 -3.43 5.60 -105.05 -0.59 -4.02 16 6 C 0.08 0.93 6.73 -82.33 -0.55 0.38 16 7 C -0.05 -0.38 5.83 -27.64 -0.16 -0.54 16 8 C -0.11 -0.72 5.90 -26.49 -0.16 -0.88 16 9 C -0.13 -1.04 5.39 -26.50 -0.14 -1.19 16 10 C 0.25 3.11 2.82 -68.84 -0.19 2.92 16 11 H 0.09 1.40 7.57 -51.93 -0.39 1.01 16 12 N -0.75 -10.30 5.01 -59.58 -0.30 -10.60 16 13 C 0.69 13.17 7.78 -86.92 -0.68 12.49 16 14 O -0.53 -12.26 13.52 5.29 0.07 -12.19 16 15 N -0.67 -13.23 5.40 -15.87 -0.09 -13.31 16 16 C 0.36 8.69 7.42 -154.69 -1.15 7.55 16 17 C -0.24 -6.15 8.60 -38.46 -0.33 -6.48 16 18 C 0.14 3.85 5.58 -106.55 -0.59 3.26 16 19 C -0.46 -11.89 9.13 -37.65 -0.34 -12.23 16 20 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 21 C 0.08 1.85 5.30 -17.34 -0.09 1.76 16 22 N -0.80 -19.81 10.84 55.55 0.60 -19.21 16 23 Si 0.91 18.21 29.57 -169.99 -5.03 13.19 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 27 C -0.28 -7.02 9.85 -39.07 -0.38 -7.41 16 28 C 0.12 2.90 11.10 -18.04 -0.20 2.70 16 29 N -0.55 -14.17 7.86 -12.76 -0.10 -14.27 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.38 7.90 -51.93 -0.41 -0.03 16 33 H 0.18 3.50 7.05 -52.49 -0.37 3.13 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 38 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.39 4.25 8.63 -40.82 -0.35 3.89 16 41 H 0.40 6.59 8.72 -40.82 -0.36 6.23 16 42 H 0.13 3.24 6.28 -52.49 -0.33 2.91 16 43 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 44 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 45 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -34.50 373.33 -10.15 -44.65 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -5.98 Total: 14.68 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -5.09 Total: 0.97 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: 0.25 Total: -66.93 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.50 -10.15 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871720459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.327 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds