Wall clock time and date at job start Wed Apr 1 2020 01:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40303 * 126.08865 * 2 1 4 4 C 1.31070 * 108.26607 * 180.09960 * 3 2 1 5 5 C 1.39299 * 108.07911 * 0.02562 * 4 3 2 6 6 C 1.34319 * 126.09237 * 180.02562 * 2 1 3 7 7 C 1.50825 * 128.03744 * 359.86644 * 6 2 1 8 8 C 1.53358 * 108.38343 * 196.57694 * 7 6 2 9 9 C 1.53109 * 109.51400 * 310.05421 * 8 7 6 10 10 C 1.50841 * 127.89666 * 179.90480 * 5 4 3 11 11 H 1.08994 * 109.71620 * 76.88472 * 10 5 4 12 12 N 1.46503 * 109.67893 * 316.34588 * 10 5 4 13 13 C 1.34775 * 119.99737 * 86.08527 * 12 10 5 14 14 O 1.21581 * 120.00130 * 359.97438 * 13 12 10 15 15 N 1.34779 * 119.99995 * 179.97438 * 13 12 10 16 16 C 1.39453 * 120.00445 * 174.97565 * 15 13 12 17 17 C 1.38639 * 119.65187 * 185.35919 * 16 15 13 18 18 C 1.40827 * 118.67499 * 180.24775 * 17 16 15 19 19 C 1.41542 * 120.99931 * 179.73343 * 18 17 16 20 20 H 1.07996 * 120.00084 * 151.58487 * 19 18 17 21 21 C 1.40037 * 120.00002 * 331.59039 * 19 18 17 22 22 N 1.30743 * 119.99867 * 350.19515 * 21 19 18 23 23 Si 1.86794 * 119.99979 * 170.19740 * 21 19 18 24 24 H 1.48499 * 109.46928 * 269.99499 * 23 21 19 25 25 H 1.48498 * 109.47380 * 29.99834 * 23 21 19 26 26 H 1.48505 * 109.47139 * 149.99947 * 23 21 19 27 27 C 1.41160 * 118.00432 * 359.46103 * 18 17 16 28 28 C 1.36591 * 119.12929 * 0.27536 * 27 18 17 29 29 N 1.32076 * 121.25647 * 359.97438 * 28 27 18 30 30 H 1.09005 * 109.47424 * 269.95710 * 1 2 3 31 31 H 1.08996 * 109.47360 * 29.95500 * 1 2 3 32 32 H 1.09002 * 109.47396 * 149.95579 * 1 2 3 33 33 H 1.07996 * 125.95903 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.68402 * 76.85413 * 7 6 2 35 35 H 1.09003 * 109.71253 * 316.32116 * 7 6 2 36 36 H 1.09005 * 109.46507 * 190.04018 * 8 7 6 37 37 H 1.09003 * 109.45765 * 70.06878 * 8 7 6 38 38 H 1.09002 * 109.46029 * 310.25853 * 9 8 7 39 39 H 1.08998 * 109.45974 * 190.27690 * 9 8 7 40 40 H 0.97001 * 119.99946 * 266.07509 * 12 10 5 41 41 H 0.97001 * 119.99707 * 354.97767 * 15 13 12 42 42 H 1.07995 * 120.66538 * 0.02562 * 17 16 15 43 43 H 0.96994 * 120.00480 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.43644 * 180.24879 * 27 18 17 45 45 H 1.07997 * 119.37339 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1338 0.0000 4 6 3.5392 0.7326 -0.0022 5 6 3.5454 -0.6603 -0.0042 6 6 2.2562 -1.0854 -0.0005 7 6 1.8438 -2.5361 0.0016 8 6 3.0540 -3.3824 0.4153 9 6 4.2699 -2.9808 -0.4240 10 6 4.7399 -1.5815 -0.0090 11 1 5.1762 -1.6232 0.9889 12 7 5.7373 -1.0911 -0.9635 13 6 6.6418 -0.1690 -0.5788 14 8 6.6297 0.2562 0.5602 15 7 7.5597 0.2818 -1.4567 16 6 8.4278 1.3103 -1.0915 17 6 9.2932 1.8445 -2.0337 18 6 10.1646 2.8788 -1.6413 19 6 11.0722 3.4559 -2.5615 20 1 11.3885 4.4810 -2.4373 21 6 11.5599 2.6976 -3.6330 22 7 11.3336 1.4107 -3.6796 23 14 12.5336 3.5246 -4.9957 24 1 11.6053 3.9778 -6.0625 25 1 13.2622 4.6948 -4.4434 26 1 13.5076 2.5586 -5.5646 27 6 10.1018 3.3268 -0.3041 28 6 9.2117 2.7428 0.5517 29 7 8.4122 1.7709 0.1507 30 1 -0.3634 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5131 32 1 -0.3634 -0.8896 -0.5145 33 1 4.4105 1.3707 -0.0031 34 1 1.5170 -2.8264 -0.9969 35 1 1.0307 -2.6862 0.7120 36 1 2.8324 -4.4372 0.2523 37 1 3.2699 -3.2157 1.4707 38 1 3.9963 -2.9732 -1.4791 39 1 5.0752 -3.6974 -0.2627 40 1 5.7467 -1.4302 -1.8723 41 1 7.6165 -0.1091 -2.3426 42 1 9.3014 1.4725 -3.0475 43 1 11.6711 0.8855 -4.4219 44 1 10.7494 4.1206 0.0379 45 1 9.1606 3.0822 1.5756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871720459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:59 Heat of formation + Delta-G solvation = 64.430415 kcal Electronic energy + Delta-G solvation = -29034.791102 eV Core-core repulsion = 25052.965421 eV Total energy + Delta-G solvation = -3981.825681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59263 -41.28237 -39.80801 -37.78489 -36.08067 -35.43159 -35.18157 -33.96928 -32.39973 -30.83081 -30.44334 -29.32461 -27.87860 -27.46419 -24.64014 -23.79436 -23.18114 -22.90552 -21.82755 -21.54641 -19.88885 -19.42292 -19.24547 -18.05928 -17.51577 -17.08303 -16.73427 -16.28554 -16.04862 -16.02933 -15.86914 -15.54233 -15.03514 -14.97759 -14.66826 -14.63085 -14.35205 -14.31310 -14.04478 -13.88453 -13.65820 -13.33206 -13.15465 -12.88111 -12.80864 -12.67910 -12.14926 -12.08193 -11.87101 -11.78998 -11.63106 -11.54525 -11.43936 -11.17603 -11.15354 -10.21583 -10.07380 -9.86793 -9.58734 -9.25528 -8.82438 -8.56422 -6.55707 0.85796 0.86356 1.02507 1.41802 1.52153 1.54356 1.58502 1.63996 1.94399 2.21912 2.36100 2.87142 3.25973 3.60633 3.61478 3.77844 3.89032 4.08200 4.15492 4.20779 4.25673 4.39926 4.45601 4.58678 4.61053 4.68124 4.73353 4.74220 4.87232 4.88633 4.93277 4.98666 5.12284 5.19329 5.24842 5.26417 5.28164 5.40404 5.51617 5.59725 5.68246 5.68962 5.89546 6.01960 6.18842 6.30952 6.58694 6.69169 6.81847 6.85471 7.07381 7.69977 7.94054 8.32447 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002438 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.206056 B =11483.396173 C =11746.813953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 N -0.346 5.346 4 C 0.055 3.945 5 C -0.271 4.271 6 C 0.102 3.898 7 C -0.051 4.051 8 C -0.105 4.105 9 C -0.117 4.117 10 C 0.244 3.756 11 H 0.063 0.937 12 N -0.722 5.722 13 C 0.690 3.310 14 O -0.574 6.574 15 N -0.663 5.663 16 C 0.355 3.645 17 C -0.257 4.257 18 C 0.116 3.884 19 C -0.487 4.487 20 H 0.082 0.918 21 C 0.037 3.963 22 N -0.819 5.819 23 Si 0.990 3.010 24 H -0.261 1.261 25 H -0.260 1.260 26 H -0.267 1.267 27 C -0.295 4.295 28 C 0.112 3.888 29 N -0.574 5.574 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.408 0.592 41 H 0.418 0.582 42 H 0.125 0.875 43 H 0.291 0.709 44 H 0.115 0.885 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.028 -14.760 -0.694 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.152 5.152 3 N -0.169 5.169 4 C -0.129 4.129 5 C -0.284 4.284 6 C -0.029 4.029 7 C -0.089 4.089 8 C -0.144 4.144 9 C -0.155 4.155 10 C 0.138 3.862 11 H 0.081 0.919 12 N -0.379 5.379 13 C 0.390 3.610 14 O -0.448 6.448 15 N -0.312 5.312 16 C 0.127 3.873 17 C -0.283 4.283 18 C 0.107 3.893 19 C -0.518 4.518 20 H 0.100 0.900 21 C -0.179 4.179 22 N -0.445 5.445 23 Si 0.810 3.190 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.191 1.191 27 C -0.319 4.319 28 C -0.041 4.041 29 N -0.294 5.294 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.244 0.756 41 H 0.255 0.745 42 H 0.142 0.858 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.624 -13.974 0.846 25.760 hybrid contribution 2.080 0.577 -1.702 2.749 sum -19.544 -13.397 -0.856 23.710 Atomic orbital electron populations 1.22241 0.71868 1.06113 1.04747 1.48638 1.07825 1.02921 1.55767 1.77479 1.01960 1.09426 1.28037 1.23327 0.94240 0.96174 0.99132 1.20457 0.95679 0.93159 1.19086 1.21582 0.89729 0.92458 0.99120 1.20618 0.99823 0.83569 1.04904 1.21539 0.92153 1.00941 0.99744 1.21877 0.99403 0.92487 1.01761 1.19127 0.83135 0.91899 0.92044 0.91869 1.45070 1.32598 1.44144 1.16103 1.16267 0.79792 0.80407 0.84555 1.90982 1.74454 1.60395 1.18977 1.42479 1.34242 1.36894 1.17571 1.18168 0.89768 0.88951 0.90421 1.21515 1.01238 1.06144 0.99389 1.18010 0.89489 0.90022 0.91740 1.19838 1.23500 0.99856 1.08562 0.89975 1.26802 0.96138 0.94960 1.00032 1.69791 1.37240 1.07283 1.30197 0.85085 0.77998 0.78890 0.77018 1.18575 1.18370 1.19103 1.21881 1.06839 1.08254 0.94957 1.21915 0.91303 0.91791 0.99112 1.67354 1.28293 1.17330 1.16411 0.89444 0.89506 0.85926 0.83906 0.87084 0.87651 0.86871 0.91957 0.89530 0.89553 0.75629 0.74475 0.85758 0.89845 0.86691 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 11.32 127.77 1.45 2.51 16 2 N -0.37 -8.67 4.00 -356.02 -1.42 -10.10 16 3 N -0.35 -11.81 12.59 -57.28 -0.72 -12.53 16 4 C 0.05 2.00 11.40 85.06 0.97 2.97 16 5 C -0.27 -7.68 5.60 -20.14 -0.11 -7.79 16 6 C 0.10 2.13 6.73 41.64 0.28 2.41 16 7 C -0.05 -0.45 5.83 30.01 0.17 -0.28 16 8 C -0.11 -0.95 5.90 30.75 0.18 -0.77 16 9 C -0.12 -1.60 5.39 30.74 0.17 -1.44 16 10 C 0.24 6.18 2.82 44.40 0.13 6.31 16 11 H 0.06 1.99 7.57 -2.39 -0.02 1.97 16 12 N -0.72 -20.30 5.01 -460.66 -2.31 -22.61 16 13 C 0.69 27.59 7.78 179.05 1.39 28.98 16 14 O -0.57 -28.31 13.52 -3.97 -0.05 -28.37 16 15 N -0.66 -27.32 5.40 -322.37 -1.74 -29.06 16 16 C 0.35 18.14 7.42 132.76 0.99 19.12 16 17 C -0.26 -13.67 8.60 23.00 0.20 -13.47 16 18 C 0.12 6.39 5.58 -21.11 -0.12 6.27 16 19 C -0.49 -25.87 9.13 23.52 0.21 -25.65 16 20 H 0.08 4.19 7.87 -2.91 -0.02 4.17 16 21 C 0.04 1.79 5.30 85.29 0.45 2.24 16 22 N -0.82 -40.93 10.84 21.84 0.24 -40.70 16 23 Si 0.99 36.88 29.57 68.60 2.03 38.90 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 27 C -0.30 -15.28 9.85 22.60 0.22 -15.05 16 28 C 0.11 5.70 11.10 84.27 0.94 6.63 16 29 N -0.57 -31.06 7.86 -194.27 -1.53 -32.59 16 30 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 0.50 7.90 -2.39 -0.02 0.48 16 33 H 0.14 6.23 7.05 -2.91 -0.02 6.21 16 34 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.06 0.73 8.11 -2.39 -0.02 0.72 16 38 H 0.09 0.94 8.10 -2.39 -0.02 0.92 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.41 8.56 8.63 -92.71 -0.80 7.76 16 41 H 0.42 14.05 8.72 -92.71 -0.81 13.24 16 42 H 0.12 6.55 6.28 -2.91 -0.02 6.53 16 43 H 0.29 12.98 8.29 -92.71 -0.77 12.21 16 44 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 45 H 0.15 6.44 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -81.56 373.33 1.45 -80.11 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.56 Total: 43.96 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 7.51 Total: 12.98 kcal Atomic # 7 Polarization: -140.10 SS G_CDS: -7.48 Total: -147.59 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.90 kcal Total: -81.56 1.45 -80.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871720459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.543 kcal (2) G-P(sol) polarization free energy of solvation -81.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds