Wall clock time and date at job start Wed Apr 1 2020 01:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40293 * 126.08758 * 2 1 4 4 C 1.31069 * 108.26745 * 179.90653 * 3 2 1 5 5 C 1.39291 * 108.07986 * 359.97438 * 4 3 2 6 6 C 1.34321 * 126.09471 * 179.97438 * 2 1 3 7 7 C 1.50826 * 128.03156 * 0.24199 * 6 2 1 8 8 C 1.53364 * 108.37943 * 163.36449 * 7 6 2 9 9 C 1.53109 * 109.51066 * 49.93396 * 8 7 6 10 10 C 1.50840 * 127.90150 * 180.08993 * 5 4 3 11 11 H 1.09002 * 109.68336 * 283.17499 * 10 5 4 12 12 N 1.46504 * 109.68215 * 43.72599 * 10 5 4 13 13 C 1.34773 * 120.00119 * 273.92544 * 12 10 5 14 14 O 1.21583 * 120.00107 * 359.97438 * 13 12 10 15 15 N 1.34775 * 120.00062 * 179.97438 * 13 12 10 16 16 C 1.39460 * 120.00154 * 175.60736 * 15 13 12 17 17 C 1.38648 * 119.64682 * 186.19819 * 16 15 13 18 18 C 1.40825 * 118.67240 * 179.75701 * 17 16 15 19 19 C 1.41544 * 120.99780 * 180.26139 * 18 17 16 20 20 H 1.08003 * 119.99815 * 201.05535 * 19 18 17 21 21 C 1.40029 * 119.99878 * 21.05638 * 19 18 17 22 22 N 1.30741 * 120.00150 * 14.19150 * 21 19 18 23 23 Si 1.86804 * 119.99824 * 194.19324 * 21 19 18 24 24 H 1.48502 * 109.46725 * 60.00106 * 23 21 19 25 25 H 1.48502 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47016 * 300.00256 * 23 21 19 27 27 C 1.41169 * 118.00163 * 0.50940 * 18 17 16 28 28 C 1.36592 * 119.12885 * 359.75365 * 27 18 17 29 29 N 1.32066 * 121.25894 * 359.97438 * 28 27 18 30 30 H 1.09005 * 109.47134 * 89.97999 * 1 2 3 31 31 H 1.09003 * 109.46751 * 209.96962 * 1 2 3 32 32 H 1.09001 * 109.47491 * 329.97405 * 1 2 3 33 33 H 1.08003 * 125.95711 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.68694 * 283.07437 * 7 6 2 35 35 H 1.09003 * 109.68236 * 43.59294 * 7 6 2 36 36 H 1.08994 * 109.46660 * 289.92234 * 8 7 6 37 37 H 1.08997 * 109.45995 * 169.94825 * 8 7 6 38 38 H 1.09000 * 109.46447 * 169.70228 * 9 8 7 39 39 H 1.09005 * 109.46153 * 49.72214 * 9 8 7 40 40 H 0.97005 * 119.99490 * 93.92302 * 12 10 5 41 41 H 0.97003 * 119.99759 * 355.60844 * 15 13 12 42 42 H 1.07997 * 120.66587 * 0.02562 * 17 16 15 43 43 H 0.96998 * 119.99891 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.43119 * 179.77458 * 27 18 17 45 45 H 1.07998 * 119.36404 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7326 0.0020 5 6 3.5455 -0.6603 0.0040 6 6 2.2564 -1.0854 0.0005 7 6 1.8439 -2.5361 -0.0039 8 6 3.0543 -3.3818 -0.4181 9 6 4.2698 -2.9811 0.4223 10 6 4.7400 -1.5815 0.0085 11 1 5.1763 -1.6219 -0.9895 12 7 5.7369 -1.0922 0.9641 13 6 6.6415 -0.1695 0.5810 14 8 6.6306 0.2564 -0.5577 15 7 7.5583 0.2810 1.4602 16 6 8.5509 1.1661 1.0406 17 6 9.5650 1.5243 1.9156 18 6 10.5596 2.4155 1.4688 19 6 11.6203 2.8099 2.3190 20 1 12.1675 3.7182 2.1139 21 6 11.9601 2.0224 3.4258 22 7 11.5017 0.8021 3.5255 23 14 13.0686 2.7156 4.7602 24 1 12.4328 3.9178 5.3567 25 1 13.2745 1.6904 5.8146 26 1 14.3789 3.0899 4.1702 27 6 10.4640 2.9078 0.1492 28 6 9.4244 2.5018 -0.6383 29 7 8.5118 1.6601 -0.1881 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3633 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 4.4105 1.3708 0.0030 34 1 1.5167 -2.8279 0.9941 35 1 1.0309 -2.6845 -0.7147 36 1 3.2709 -3.2138 -1.4731 37 1 2.8327 -4.4367 -0.2565 38 1 5.0752 -3.6976 0.2608 39 1 3.9956 -2.9745 1.4773 40 1 5.7457 -1.4322 1.8725 41 1 7.5277 -0.0105 2.3849 42 1 9.5940 1.1245 2.9184 43 1 11.7374 0.2565 4.2920 44 1 11.2034 3.5962 -0.2328 45 1 9.3474 2.8764 -1.6483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871720460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:03 Heat of formation + Delta-G solvation = 88.093628 kcal Electronic energy + Delta-G solvation = -29011.666450 eV Core-core repulsion = 25030.866883 eV Total energy + Delta-G solvation = -3980.799567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58847 -39.65206 -38.07104 -36.78160 -34.44464 -34.00931 -33.65079 -32.91619 -30.45508 -29.71675 -29.28276 -27.91289 -26.68361 -25.95711 -23.57131 -22.12259 -21.89542 -21.56935 -20.69553 -19.94673 -18.89234 -17.87397 -17.60571 -16.97206 -16.12316 -15.72919 -15.29691 -15.05197 -14.68254 -14.50996 -14.24541 -14.14899 -14.11209 -13.75385 -13.54330 -13.28807 -13.12842 -12.97279 -12.74987 -12.65298 -12.55705 -12.24419 -11.97782 -11.45288 -11.41556 -11.17697 -11.15611 -10.89849 -10.84985 -10.52066 -10.26708 -10.06335 -9.69653 -9.47386 -9.31962 -9.22903 -8.76395 -8.24969 -7.93138 -7.65008 -6.93454 -6.72779 -4.58019 1.82176 2.46268 2.75998 2.80111 2.86926 3.01931 3.05195 3.27742 3.31013 3.86403 3.95780 4.29372 4.38400 4.55134 4.57669 4.74089 4.81341 4.85501 4.91014 5.05729 5.11706 5.20317 5.31582 5.37801 5.43901 5.58710 5.74437 5.78373 5.83599 5.97008 6.06365 6.10002 6.19208 6.62320 6.70030 6.77402 6.84769 6.88203 6.98926 7.01703 7.21096 7.38957 7.51894 7.56438 7.77689 7.92670 8.17943 8.48812 8.53395 8.79228 8.80308 9.29601 9.81943 10.09341 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.002418 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.904479 B =11577.751990 C =11940.524509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.375 5.375 3 N -0.307 5.307 4 C 0.083 3.917 5 C -0.245 4.245 6 C 0.081 3.919 7 C -0.054 4.054 8 C -0.108 4.108 9 C -0.126 4.126 10 C 0.246 3.754 11 H 0.094 0.906 12 N -0.746 5.746 13 C 0.692 3.308 14 O -0.530 6.530 15 N -0.669 5.669 16 C 0.356 3.644 17 C -0.251 4.251 18 C 0.141 3.859 19 C -0.451 4.451 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.789 5.789 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.287 4.287 28 C 0.120 3.880 29 N -0.552 5.552 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.183 0.817 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.390 0.610 41 H 0.403 0.597 42 H 0.135 0.865 43 H 0.281 0.719 44 H 0.100 0.900 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.527 -10.900 -0.236 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.156 5.156 3 N -0.128 5.128 4 C -0.102 4.102 5 C -0.257 4.257 6 C -0.048 4.048 7 C -0.093 4.093 8 C -0.147 4.147 9 C -0.164 4.164 10 C 0.139 3.861 11 H 0.112 0.888 12 N -0.402 5.402 13 C 0.391 3.609 14 O -0.401 6.401 15 N -0.316 5.316 16 C 0.130 3.870 17 C -0.277 4.277 18 C 0.132 3.868 19 C -0.482 4.482 20 H 0.099 0.901 21 C -0.143 4.143 22 N -0.415 5.415 23 Si 0.737 3.263 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.189 1.189 27 C -0.311 4.311 28 C -0.034 4.034 29 N -0.271 5.271 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.200 0.800 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.223 0.777 41 H 0.237 0.763 42 H 0.153 0.847 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.199 -9.969 -1.754 22.593 hybrid contribution 1.708 -0.347 2.156 2.773 sum -18.491 -10.316 0.403 21.178 Atomic orbital electron populations 1.21770 0.74892 1.04134 1.03084 1.48226 1.06206 1.03710 1.57481 1.77602 1.01740 1.06959 1.26483 1.23709 0.94779 0.94839 0.96835 1.20330 0.93829 0.94438 1.17147 1.20851 0.90974 0.90483 1.02473 1.20336 0.98975 0.87539 1.02446 1.21485 0.93335 0.99044 1.00815 1.21868 0.98126 0.95924 1.00472 1.18940 0.84149 0.89341 0.93659 0.88781 1.45247 1.34189 1.45823 1.14964 1.16101 0.79385 0.80015 0.85385 1.91019 1.72751 1.58908 1.17431 1.42574 1.29481 1.47397 1.12159 1.17973 0.87178 0.90576 0.91293 1.21696 0.95970 1.09058 1.01007 1.17566 0.90492 0.88397 0.90297 1.19569 1.13723 1.07799 1.07130 0.90119 1.25969 0.95846 0.93927 0.98518 1.69752 1.37065 1.06673 1.28004 0.86287 0.80558 0.79662 0.79758 1.18763 1.20284 1.18896 1.21632 1.03065 1.10265 0.96123 1.21458 0.90492 0.93541 0.97895 1.67209 1.29329 1.16137 1.14474 0.91002 0.89884 0.89416 0.79971 0.89941 0.90393 0.90882 0.90475 0.90525 0.91213 0.77696 0.76301 0.84704 0.90788 0.88195 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.32 59.85 0.68 1.43 16 2 N -0.37 -4.62 4.00 -63.87 -0.26 -4.88 16 3 N -0.31 -4.97 12.59 30.54 0.38 -4.58 16 4 C 0.08 1.40 11.40 -17.49 -0.20 1.20 16 5 C -0.24 -3.42 5.60 -105.05 -0.59 -4.01 16 6 C 0.08 0.93 6.73 -82.33 -0.55 0.38 16 7 C -0.05 -0.38 5.83 -27.63 -0.16 -0.54 16 8 C -0.11 -0.73 5.90 -26.49 -0.16 -0.89 16 9 C -0.13 -1.06 5.39 -26.50 -0.14 -1.20 16 10 C 0.25 3.14 2.82 -68.84 -0.19 2.95 16 11 H 0.09 1.42 7.57 -51.93 -0.39 1.03 16 12 N -0.75 -10.40 5.01 -59.57 -0.30 -10.70 16 13 C 0.69 13.28 7.79 -86.92 -0.68 12.61 16 14 O -0.53 -12.36 13.52 5.29 0.07 -12.29 16 15 N -0.67 -13.31 5.39 -15.86 -0.09 -13.40 16 16 C 0.36 8.76 7.42 -154.68 -1.15 7.61 16 17 C -0.25 -6.45 8.67 -38.45 -0.33 -6.78 16 18 C 0.14 3.75 5.64 -106.55 -0.60 3.15 16 19 C -0.45 -11.68 9.14 -37.65 -0.34 -12.03 16 20 H 0.08 2.00 7.89 -52.48 -0.41 1.58 16 21 C 0.08 1.84 5.28 -17.34 -0.09 1.75 16 22 N -0.79 -19.39 10.60 55.55 0.59 -18.80 16 23 Si 0.91 18.00 29.58 -169.99 -5.03 12.97 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 27 C -0.29 -7.17 9.85 -39.06 -0.38 -7.56 16 28 C 0.12 2.95 11.10 -18.05 -0.20 2.75 16 29 N -0.55 -14.36 7.86 -12.76 -0.10 -14.46 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.37 7.90 -51.93 -0.41 -0.04 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.18 3.46 7.05 -52.48 -0.37 3.09 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.39 4.30 8.62 -40.82 -0.35 3.95 16 41 H 0.40 6.62 8.72 -40.82 -0.36 6.26 16 42 H 0.14 3.43 5.89 -52.49 -0.31 3.12 16 43 H 0.28 6.25 8.29 -40.82 -0.34 5.92 16 44 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 45 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -34.44 372.86 -10.16 -44.60 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -5.96 Total: 15.11 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -5.10 Total: 0.81 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: 0.23 Total: -66.82 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.07 Total: -12.29 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.44 -10.16 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871720460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.693 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds