Wall clock time and date at job start Wed Apr 1 2020 01:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40293 * 126.08758 * 2 1 4 4 C 1.31069 * 108.26745 * 179.90653 * 3 2 1 5 5 C 1.39291 * 108.07986 * 359.97438 * 4 3 2 6 6 C 1.34321 * 126.09471 * 179.97438 * 2 1 3 7 7 C 1.50826 * 128.03156 * 0.24199 * 6 2 1 8 8 C 1.53364 * 108.37943 * 163.36449 * 7 6 2 9 9 C 1.53109 * 109.51066 * 49.93396 * 8 7 6 10 10 C 1.50840 * 127.90150 * 180.08993 * 5 4 3 11 11 H 1.09002 * 109.68336 * 283.17499 * 10 5 4 12 12 N 1.46504 * 109.68215 * 43.72599 * 10 5 4 13 13 C 1.34773 * 120.00119 * 273.92544 * 12 10 5 14 14 O 1.21583 * 120.00107 * 359.97438 * 13 12 10 15 15 N 1.34775 * 120.00062 * 179.97438 * 13 12 10 16 16 C 1.39460 * 120.00154 * 175.60736 * 15 13 12 17 17 C 1.38648 * 119.64682 * 186.19819 * 16 15 13 18 18 C 1.40825 * 118.67240 * 179.75701 * 17 16 15 19 19 C 1.41544 * 120.99780 * 180.26139 * 18 17 16 20 20 H 1.08003 * 119.99815 * 201.05535 * 19 18 17 21 21 C 1.40029 * 119.99878 * 21.05638 * 19 18 17 22 22 N 1.30741 * 120.00150 * 14.19150 * 21 19 18 23 23 Si 1.86804 * 119.99824 * 194.19324 * 21 19 18 24 24 H 1.48502 * 109.46725 * 60.00106 * 23 21 19 25 25 H 1.48502 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47016 * 300.00256 * 23 21 19 27 27 C 1.41169 * 118.00163 * 0.50940 * 18 17 16 28 28 C 1.36592 * 119.12885 * 359.75365 * 27 18 17 29 29 N 1.32066 * 121.25894 * 359.97438 * 28 27 18 30 30 H 1.09005 * 109.47134 * 89.97999 * 1 2 3 31 31 H 1.09003 * 109.46751 * 209.96962 * 1 2 3 32 32 H 1.09001 * 109.47491 * 329.97405 * 1 2 3 33 33 H 1.08003 * 125.95711 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.68694 * 283.07437 * 7 6 2 35 35 H 1.09003 * 109.68236 * 43.59294 * 7 6 2 36 36 H 1.08994 * 109.46660 * 289.92234 * 8 7 6 37 37 H 1.08997 * 109.45995 * 169.94825 * 8 7 6 38 38 H 1.09000 * 109.46447 * 169.70228 * 9 8 7 39 39 H 1.09005 * 109.46153 * 49.72214 * 9 8 7 40 40 H 0.97005 * 119.99490 * 93.92302 * 12 10 5 41 41 H 0.97003 * 119.99759 * 355.60844 * 15 13 12 42 42 H 1.07997 * 120.66587 * 0.02562 * 17 16 15 43 43 H 0.96998 * 119.99891 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.43119 * 179.77458 * 27 18 17 45 45 H 1.07998 * 119.36404 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7326 0.0020 5 6 3.5455 -0.6603 0.0040 6 6 2.2564 -1.0854 0.0005 7 6 1.8439 -2.5361 -0.0039 8 6 3.0543 -3.3818 -0.4181 9 6 4.2698 -2.9811 0.4223 10 6 4.7400 -1.5815 0.0085 11 1 5.1763 -1.6219 -0.9895 12 7 5.7369 -1.0922 0.9641 13 6 6.6415 -0.1695 0.5810 14 8 6.6306 0.2564 -0.5577 15 7 7.5583 0.2810 1.4602 16 6 8.5509 1.1661 1.0406 17 6 9.5650 1.5243 1.9156 18 6 10.5596 2.4155 1.4688 19 6 11.6203 2.8099 2.3190 20 1 12.1675 3.7182 2.1139 21 6 11.9601 2.0224 3.4258 22 7 11.5017 0.8021 3.5255 23 14 13.0686 2.7156 4.7602 24 1 12.4328 3.9178 5.3567 25 1 13.2745 1.6904 5.8146 26 1 14.3789 3.0899 4.1702 27 6 10.4640 2.9078 0.1492 28 6 9.4244 2.5018 -0.6383 29 7 8.5118 1.6601 -0.1881 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3633 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 4.4105 1.3708 0.0030 34 1 1.5167 -2.8279 0.9941 35 1 1.0309 -2.6845 -0.7147 36 1 3.2709 -3.2138 -1.4731 37 1 2.8327 -4.4367 -0.2565 38 1 5.0752 -3.6976 0.2608 39 1 3.9956 -2.9745 1.4773 40 1 5.7457 -1.4322 1.8725 41 1 7.5277 -0.0105 2.3849 42 1 9.5940 1.1245 2.9184 43 1 11.7374 0.2565 4.2920 44 1 11.2034 3.5962 -0.2328 45 1 9.3474 2.8764 -1.6483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871720460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:02 Heat of formation + Delta-G solvation = 64.934782 kcal Electronic energy + Delta-G solvation = -29012.670693 eV Core-core repulsion = 25030.866883 eV Total energy + Delta-G solvation = -3981.803810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.59240 -41.26687 -39.79105 -37.78456 -36.11390 -35.43982 -35.18034 -33.96586 -32.38578 -30.81193 -30.44030 -29.31296 -27.89901 -27.46284 -24.63718 -23.77443 -23.16654 -22.90799 -21.82608 -21.54377 -19.89184 -19.42128 -19.25113 -18.06074 -17.49943 -17.08645 -16.77255 -16.32824 -16.01964 -15.98987 -15.80191 -15.56031 -15.08942 -14.92213 -14.67156 -14.62815 -14.35555 -14.30794 -14.02330 -13.88233 -13.65930 -13.32968 -13.14442 -12.87066 -12.81066 -12.65149 -12.14606 -12.01686 -11.91830 -11.79359 -11.63776 -11.54664 -11.46113 -11.17342 -11.13561 -10.21349 -10.07596 -9.90018 -9.58047 -9.25588 -8.79559 -8.58286 -6.55400 0.85780 0.88406 1.04114 1.41710 1.52580 1.53629 1.61391 1.64022 1.94640 2.20902 2.36492 2.86334 3.26400 3.60632 3.61594 3.81686 3.88763 4.08032 4.15838 4.21540 4.25716 4.40085 4.45664 4.58662 4.61079 4.68157 4.73632 4.75360 4.87992 4.89720 4.94649 4.99058 5.13419 5.19180 5.25726 5.27667 5.28258 5.40150 5.53903 5.59949 5.68404 5.70320 5.89926 6.03072 6.18726 6.30732 6.59985 6.69313 6.82750 6.85212 7.08373 7.71500 7.96489 8.27703 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.002418 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.904479 B =11577.751990 C =11940.524509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 N -0.346 5.346 4 C 0.055 3.945 5 C -0.271 4.271 6 C 0.102 3.898 7 C -0.050 4.050 8 C -0.105 4.105 9 C -0.117 4.117 10 C 0.244 3.756 11 H 0.062 0.938 12 N -0.723 5.723 13 C 0.690 3.310 14 O -0.575 6.575 15 N -0.662 5.662 16 C 0.354 3.646 17 C -0.269 4.269 18 C 0.111 3.889 19 C -0.480 4.480 20 H 0.083 0.917 21 C 0.037 3.963 22 N -0.809 5.809 23 Si 0.990 3.010 24 H -0.261 1.261 25 H -0.264 1.264 26 H -0.260 1.260 27 C -0.301 4.301 28 C 0.113 3.887 29 N -0.579 5.579 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.407 0.593 41 H 0.418 0.582 42 H 0.134 0.866 43 H 0.292 0.708 44 H 0.114 0.886 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.374 -13.634 1.420 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.151 5.151 3 N -0.168 5.168 4 C -0.129 4.129 5 C -0.284 4.284 6 C -0.029 4.029 7 C -0.089 4.089 8 C -0.144 4.144 9 C -0.155 4.155 10 C 0.138 3.862 11 H 0.080 0.920 12 N -0.379 5.379 13 C 0.390 3.610 14 O -0.449 6.449 15 N -0.311 5.311 16 C 0.127 3.873 17 C -0.295 4.295 18 C 0.103 3.897 19 C -0.510 4.510 20 H 0.101 0.899 21 C -0.180 4.180 22 N -0.435 5.435 23 Si 0.810 3.190 24 H -0.185 1.185 25 H -0.188 1.188 26 H -0.184 1.184 27 C -0.325 4.325 28 C -0.040 4.040 29 N -0.299 5.299 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.244 0.756 41 H 0.255 0.745 42 H 0.151 0.849 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.100 -12.747 -0.069 25.513 hybrid contribution 2.150 0.458 1.606 2.723 sum -19.950 -12.289 1.537 23.481 Atomic orbital electron populations 1.22244 0.71860 1.06122 1.04740 1.48636 1.07822 1.02914 1.55767 1.77474 1.01939 1.09406 1.28021 1.23337 0.94272 0.96135 0.99120 1.20447 0.95629 0.93205 1.19096 1.21574 0.89736 0.92452 0.99135 1.20615 0.99771 0.83598 1.04912 1.21536 0.92170 1.00961 0.99711 1.21876 0.99377 0.92500 1.01788 1.19122 0.83171 0.91930 0.91982 0.91991 1.45071 1.32864 1.43836 1.16159 1.16270 0.79709 0.80418 0.84632 1.90982 1.73976 1.60548 1.19379 1.42469 1.28839 1.46702 1.13131 1.18188 0.87759 0.90582 0.90797 1.21683 0.96622 1.10041 1.01132 1.18013 0.91313 0.89139 0.91254 1.19871 1.14160 1.08499 1.08516 0.89865 1.26855 0.97149 0.93906 1.00088 1.69782 1.37312 1.07547 1.28847 0.85138 0.78276 0.79035 0.76581 1.18525 1.18798 1.18434 1.21807 1.03764 1.10950 0.95969 1.21878 0.90115 0.93108 0.98930 1.67332 1.30116 1.17133 1.15317 0.89464 0.85942 0.89467 0.83776 0.87060 0.87647 0.91994 0.86896 0.89688 0.89483 0.75642 0.74537 0.84897 0.89648 0.86806 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.32 127.77 1.45 2.49 16 2 N -0.37 -8.59 4.00 -355.99 -1.42 -10.02 16 3 N -0.35 -11.66 12.59 -57.28 -0.72 -12.38 16 4 C 0.05 1.98 11.40 85.06 0.97 2.95 16 5 C -0.27 -7.67 5.60 -20.14 -0.11 -7.78 16 6 C 0.10 2.12 6.73 41.64 0.28 2.40 16 7 C -0.05 -0.46 5.83 30.01 0.17 -0.28 16 8 C -0.11 -0.99 5.90 30.75 0.18 -0.80 16 9 C -0.12 -1.66 5.39 30.74 0.17 -1.49 16 10 C 0.24 6.26 2.82 44.40 0.13 6.39 16 11 H 0.06 1.98 7.57 -2.39 -0.02 1.97 16 12 N -0.72 -20.57 5.01 -460.65 -2.31 -22.88 16 13 C 0.69 27.86 7.79 179.06 1.39 29.26 16 14 O -0.57 -28.60 13.52 -3.98 -0.05 -28.66 16 15 N -0.66 -27.53 5.39 -322.37 -1.74 -29.27 16 16 C 0.35 18.22 7.42 132.76 0.98 19.21 16 17 C -0.27 -14.34 8.67 23.00 0.20 -14.14 16 18 C 0.11 6.13 5.64 -21.11 -0.12 6.01 16 19 C -0.48 -25.37 9.14 23.52 0.22 -25.16 16 20 H 0.08 4.20 7.89 -2.91 -0.02 4.18 16 21 C 0.04 1.79 5.28 85.29 0.45 2.24 16 22 N -0.81 -39.86 10.60 21.84 0.23 -39.63 16 23 Si 0.99 36.28 29.58 68.60 2.03 38.31 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 25 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 26 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 27 C -0.30 -15.61 9.85 22.60 0.22 -15.39 16 28 C 0.11 5.78 11.10 84.27 0.94 6.71 16 29 N -0.58 -31.57 7.86 -194.27 -1.53 -33.09 16 30 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.12 0.48 7.90 -2.39 -0.02 0.46 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.14 6.20 7.05 -2.91 -0.02 6.18 16 34 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.75 8.11 -2.39 -0.02 0.73 16 37 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 0.97 8.10 -2.38 -0.02 0.95 16 40 H 0.41 8.70 8.62 -92.70 -0.80 7.90 16 41 H 0.42 14.14 8.72 -92.71 -0.81 13.34 16 42 H 0.13 6.99 5.89 -2.91 -0.02 6.98 16 43 H 0.29 12.81 8.29 -92.71 -0.77 12.04 16 44 H 0.11 5.39 8.06 -2.91 -0.02 5.37 16 45 H 0.14 6.43 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -81.35 372.86 1.44 -79.91 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: -0.56 Total: 45.07 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 7.51 Total: 12.63 kcal Atomic # 7 Polarization: -139.77 SS G_CDS: -7.49 Total: -147.26 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -81.35 1.44 -79.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871720460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.847 kcal (2) G-P(sol) polarization free energy of solvation -81.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds