Wall clock time and date at job start Wed Apr 1 2020 01:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40376 * 126.12808 * 2 1 4 4 C 1.31212 * 108.27124 * 180.52422 * 3 2 1 5 5 C 1.38995 * 107.83221 * 359.97438 * 4 3 2 6 6 C 1.34379 * 126.12416 * 180.02562 * 2 1 3 7 7 C 1.51377 * 127.72550 * 358.33372 * 6 2 1 8 8 C 1.53594 * 107.56423 * 246.26763 * 7 6 2 9 9 C 1.51581 * 110.75780 * 278.33102 * 8 7 6 10 10 N 1.45176 * 114.65345 * 67.42079 * 9 8 7 11 11 C 1.34774 * 119.55534 * 111.63600 * 10 9 8 12 12 O 1.21577 * 120.00119 * 355.04719 * 11 10 9 13 13 N 1.34779 * 119.99845 * 175.05039 * 11 10 9 14 14 C 1.39459 * 120.00049 * 185.23229 * 13 11 10 15 15 C 1.38641 * 119.64525 * 185.49452 * 14 13 11 16 16 C 1.40826 * 118.67076 * 179.71825 * 15 14 13 17 17 C 1.41540 * 121.00055 * 180.27709 * 16 15 14 18 18 H 1.08005 * 120.00206 * 208.29685 * 17 16 15 19 19 C 1.40036 * 119.99888 * 28.29259 * 17 16 15 20 20 N 1.30743 * 119.99841 * 9.95164 * 19 17 16 21 21 Si 1.86800 * 120.00133 * 189.94879 * 19 17 16 22 22 H 1.48501 * 109.47185 * 60.00022 * 21 19 17 23 23 H 1.48496 * 109.46915 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46948 * 300.00181 * 21 19 17 25 25 C 1.41163 * 118.00332 * 0.54082 * 16 15 14 26 26 C 1.36584 * 119.12775 * 359.73820 * 25 16 15 27 27 N 1.32070 * 121.26356 * 359.97423 * 26 25 16 28 28 C 1.47309 * 120.88261 * 291.60966 * 10 9 8 29 29 H 1.09002 * 109.47469 * 269.96935 * 1 2 3 30 30 H 1.09005 * 109.47089 * 29.97187 * 1 2 3 31 31 H 1.09000 * 109.47371 * 149.96726 * 1 2 3 32 32 H 1.08001 * 126.08314 * 180.02562 * 4 3 2 33 33 H 1.09009 * 109.83878 * 5.78397 * 7 6 2 34 34 H 1.08995 * 109.84021 * 126.74965 * 7 6 2 35 35 H 1.09005 * 109.21788 * 38.65739 * 8 7 6 36 36 H 1.09003 * 109.21950 * 157.99864 * 8 7 6 37 37 H 1.08998 * 108.44673 * 188.76483 * 9 8 7 38 38 H 1.09009 * 108.44407 * 306.25059 * 9 8 7 39 39 H 0.97005 * 119.99614 * 5.23405 * 13 11 10 40 40 H 1.07995 * 120.66792 * 0.02562 * 15 14 13 41 41 H 0.97003 * 120.00089 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.43631 * 179.75801 * 25 16 15 43 43 H 1.08007 * 119.37344 * 179.97438 * 26 25 16 44 44 H 1.08994 * 109.96560 * 318.47965 * 28 10 9 45 45 H 1.08995 * 109.96412 * 197.17341 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2926 1.1338 0.0000 4 6 3.5414 0.7315 -0.0114 5 6 3.5408 -0.6584 -0.0183 6 6 2.2571 -1.0854 -0.0005 7 6 1.8365 -2.5392 0.0337 8 6 2.3051 -3.1259 1.3735 9 6 3.7684 -3.5159 1.3068 10 7 4.6873 -2.3994 1.1773 11 6 5.5098 -2.0933 2.2002 12 8 5.4173 -2.6915 3.2545 13 7 6.4347 -1.1238 2.0542 14 6 7.3567 -0.8808 3.0719 15 6 8.2302 0.1904 2.9644 16 6 9.1488 0.4204 4.0068 17 6 10.0589 1.5030 3.9508 18 1 11.0108 1.4349 4.4564 19 6 9.7250 2.6623 3.2398 20 7 8.5073 2.8274 2.7933 21 14 11.0194 3.9728 2.9292 22 1 12.1413 3.3864 2.1528 23 1 10.4167 5.0915 2.1610 24 1 11.5292 4.4825 4.2275 25 6 9.1385 -0.4646 5.1065 26 6 8.2440 -1.4966 5.1211 27 7 7.3922 -1.6794 4.1285 28 6 4.7332 -1.5972 -0.0573 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 4.4145 1.3672 -0.0140 33 1 0.7516 -2.6123 -0.0430 34 1 2.3035 -3.0789 -0.7901 35 1 2.1673 -2.3824 2.1586 36 1 1.7089 -4.0081 1.6071 37 1 4.0203 -4.0666 2.2131 38 1 3.9104 -4.1774 0.4521 39 1 6.4589 -0.5951 1.2413 40 1 8.2034 0.8385 2.1010 41 1 8.2761 3.6302 2.3004 42 1 9.8287 -0.3272 5.9258 43 1 8.2329 -2.1763 5.9604 44 1 4.6649 -2.2495 -0.9278 45 1 5.6584 -1.0222 -0.0934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871734661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:16 Heat of formation + Delta-G solvation = 105.915764 kcal Electronic energy + Delta-G solvation = -29737.802832 eV Core-core repulsion = 25757.776091 eV Total energy + Delta-G solvation = -3980.026741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62011 -39.89703 -38.18864 -36.29674 -34.51473 -34.15536 -33.60003 -32.55816 -30.96849 -30.44329 -28.57636 -27.52277 -26.06935 -25.84805 -25.05011 -22.80170 -21.88349 -21.02992 -20.87453 -19.54778 -19.05252 -17.92903 -17.48914 -16.97768 -16.00185 -15.63471 -15.34956 -15.11471 -14.90483 -14.65024 -14.49005 -14.15073 -13.95184 -13.64440 -13.47134 -13.42393 -13.06959 -12.78819 -12.73495 -12.62739 -12.53227 -12.24391 -11.88526 -11.68715 -11.42658 -11.36211 -11.17238 -11.08037 -10.85279 -10.58715 -10.22672 -10.08386 -9.70053 -9.49378 -9.32569 -9.31419 -8.57101 -8.27347 -7.87961 -7.68447 -6.94501 -6.70863 -4.57121 1.76333 2.39164 2.63007 2.75768 2.86276 3.04666 3.07486 3.16384 3.29312 3.88963 3.91200 4.26298 4.33730 4.36559 4.64554 4.74650 4.77840 4.88487 4.93526 5.01913 5.12424 5.20988 5.28217 5.37979 5.45214 5.53542 5.64858 5.74887 5.78040 5.87599 6.04104 6.09353 6.11153 6.54350 6.60512 6.67422 6.81729 6.89062 6.93171 7.01293 7.17439 7.28902 7.47610 7.54755 7.64884 7.91075 8.14096 8.40177 8.51684 8.77969 8.81485 9.23524 9.77970 10.16424 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.003347 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.204796 B = 8362.744496 C =10029.284813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.371 5.371 3 N -0.302 5.302 4 C 0.069 3.931 5 C -0.263 4.263 6 C 0.098 3.902 7 C -0.055 4.055 8 C -0.129 4.129 9 C 0.131 3.869 10 N -0.627 5.627 11 C 0.697 3.303 12 O -0.534 6.534 13 N -0.666 5.666 14 C 0.355 3.645 15 C -0.241 4.241 16 C 0.146 3.854 17 C -0.458 4.458 18 H 0.080 0.920 19 C 0.077 3.923 20 N -0.795 5.795 21 Si 0.913 3.087 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.283 4.283 26 C 0.119 3.881 27 N -0.552 5.552 28 C 0.192 3.808 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.186 0.814 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.403 0.597 40 H 0.128 0.872 41 H 0.281 0.719 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 -6.887 -11.492 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.152 5.152 3 N -0.123 5.123 4 C -0.116 4.116 5 C -0.275 4.275 6 C -0.032 4.032 7 C -0.094 4.094 8 C -0.169 4.169 9 C 0.006 3.994 10 N -0.366 5.366 11 C 0.398 3.602 12 O -0.405 6.405 13 N -0.315 5.315 14 C 0.129 3.871 15 C -0.266 4.266 16 C 0.137 3.863 17 C -0.489 4.489 18 H 0.098 0.902 19 C -0.141 4.141 20 N -0.421 5.421 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.306 4.306 26 C -0.035 4.035 27 N -0.271 5.271 28 C 0.067 3.933 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.203 0.797 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.240 0.760 40 H 0.146 0.854 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.101 0.899 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.620 -6.899 -10.794 20.202 hybrid contribution 1.429 1.334 -0.594 2.043 sum -14.192 -5.565 -11.388 19.028 Atomic orbital electron populations 1.21806 0.74738 1.04193 1.03335 1.48298 1.06342 1.03683 1.56874 1.77635 1.01551 1.07076 1.26015 1.23630 0.95410 0.94234 0.98315 1.20331 0.94649 0.94205 1.18334 1.20988 0.90978 0.90678 1.00509 1.20624 1.01103 0.88098 0.99579 1.21761 0.97228 1.01613 0.96287 1.20562 0.87698 0.87551 1.03568 1.47075 1.39963 1.34372 1.15168 1.16015 0.79437 0.81092 0.83617 1.90979 1.71208 1.53287 1.25064 1.42736 1.32040 1.36708 1.20050 1.17985 0.89044 0.92093 0.87987 1.21534 1.02873 0.99415 1.02827 1.17557 0.89969 0.90312 0.88412 1.19519 1.02953 0.98123 1.28354 0.90164 1.25918 0.95671 0.99407 0.93138 1.69748 1.18144 1.26801 1.27426 0.86290 0.81109 0.79399 0.79458 1.18814 1.20303 1.18991 1.21694 1.05814 1.02471 1.00669 1.21466 0.91457 0.95546 0.95054 1.67186 1.26586 1.30690 1.02657 1.20086 0.94745 0.91319 0.87133 0.90858 0.89289 0.89691 0.79710 0.90777 0.89052 0.91286 0.89960 0.88811 0.92095 0.76020 0.85389 0.90797 0.88066 0.86095 0.89879 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.21 59.84 0.67 1.43 16 2 N -0.37 -4.48 4.01 -63.78 -0.26 -4.74 16 3 N -0.30 -4.48 12.60 30.51 0.38 -4.10 16 4 C 0.07 0.97 12.02 -17.54 -0.21 0.76 16 5 C -0.26 -3.35 5.64 -104.85 -0.59 -3.94 16 6 C 0.10 1.13 6.05 -82.19 -0.50 0.63 16 7 C -0.05 -0.44 5.77 -27.24 -0.16 -0.60 16 8 C -0.13 -1.26 5.80 -27.14 -0.16 -1.41 16 9 C 0.13 1.55 5.63 -5.47 -0.03 1.52 16 10 N -0.63 -9.15 2.67 -181.41 -0.48 -9.64 16 11 C 0.70 13.98 8.20 -86.92 -0.71 13.26 16 12 O -0.53 -12.93 13.92 5.30 0.07 -12.85 16 13 N -0.67 -13.65 5.28 -15.87 -0.08 -13.73 16 14 C 0.36 8.82 7.40 -154.68 -1.15 7.68 16 15 C -0.24 -6.17 8.60 -38.45 -0.33 -6.50 16 16 C 0.15 3.88 5.58 -106.55 -0.59 3.29 16 17 C -0.46 -11.88 9.13 -37.65 -0.34 -12.22 16 18 H 0.08 1.99 7.87 -52.48 -0.41 1.57 16 19 C 0.08 1.87 5.30 -17.34 -0.09 1.78 16 20 N -0.80 -19.85 10.84 55.55 0.60 -19.25 16 21 Si 0.91 18.17 29.57 -169.99 -5.03 13.15 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 23 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.28 -7.06 9.85 -39.07 -0.38 -7.44 16 26 C 0.12 2.92 11.10 -18.05 -0.20 2.72 16 27 N -0.55 -14.49 7.90 -12.76 -0.10 -14.59 16 28 C 0.19 2.23 6.10 -4.21 -0.03 2.21 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.40 7.19 -51.93 -0.37 0.02 16 32 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.07 0.43 6.98 -51.92 -0.36 0.07 16 34 H 0.09 0.60 7.92 -51.93 -0.41 0.19 16 35 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.34 6.85 -51.93 -0.36 0.98 16 38 H 0.06 0.56 8.02 -51.92 -0.42 0.14 16 39 H 0.40 6.92 6.15 -40.82 -0.25 6.67 16 40 H 0.13 3.24 6.28 -52.49 -0.33 2.92 16 41 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 42 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 43 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.97 5.71 -51.93 -0.30 0.67 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -35.34 367.37 -9.87 -45.21 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.71 Total: 11.85 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -4.80 Total: 3.15 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: 0.06 Total: -66.04 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.85 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.34 -9.87 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.122 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds