Wall clock time and date at job start Wed Apr 1 2020 01:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40376 * 126.12808 * 2 1 4 4 C 1.31212 * 108.27124 * 180.52422 * 3 2 1 5 5 C 1.38995 * 107.83221 * 359.97438 * 4 3 2 6 6 C 1.34379 * 126.12416 * 180.02562 * 2 1 3 7 7 C 1.51377 * 127.72550 * 358.33372 * 6 2 1 8 8 C 1.53594 * 107.56423 * 246.26763 * 7 6 2 9 9 C 1.51581 * 110.75780 * 278.33102 * 8 7 6 10 10 N 1.45176 * 114.65345 * 67.42079 * 9 8 7 11 11 C 1.34774 * 119.55534 * 111.63600 * 10 9 8 12 12 O 1.21577 * 120.00119 * 355.04719 * 11 10 9 13 13 N 1.34779 * 119.99845 * 175.05039 * 11 10 9 14 14 C 1.39459 * 120.00049 * 185.23229 * 13 11 10 15 15 C 1.38641 * 119.64525 * 185.49452 * 14 13 11 16 16 C 1.40826 * 118.67076 * 179.71825 * 15 14 13 17 17 C 1.41540 * 121.00055 * 180.27709 * 16 15 14 18 18 H 1.08005 * 120.00206 * 208.29685 * 17 16 15 19 19 C 1.40036 * 119.99888 * 28.29259 * 17 16 15 20 20 N 1.30743 * 119.99841 * 9.95164 * 19 17 16 21 21 Si 1.86800 * 120.00133 * 189.94879 * 19 17 16 22 22 H 1.48501 * 109.47185 * 60.00022 * 21 19 17 23 23 H 1.48496 * 109.46915 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46948 * 300.00181 * 21 19 17 25 25 C 1.41163 * 118.00332 * 0.54082 * 16 15 14 26 26 C 1.36584 * 119.12775 * 359.73820 * 25 16 15 27 27 N 1.32070 * 121.26356 * 359.97423 * 26 25 16 28 28 C 1.47309 * 120.88261 * 291.60966 * 10 9 8 29 29 H 1.09002 * 109.47469 * 269.96935 * 1 2 3 30 30 H 1.09005 * 109.47089 * 29.97187 * 1 2 3 31 31 H 1.09000 * 109.47371 * 149.96726 * 1 2 3 32 32 H 1.08001 * 126.08314 * 180.02562 * 4 3 2 33 33 H 1.09009 * 109.83878 * 5.78397 * 7 6 2 34 34 H 1.08995 * 109.84021 * 126.74965 * 7 6 2 35 35 H 1.09005 * 109.21788 * 38.65739 * 8 7 6 36 36 H 1.09003 * 109.21950 * 157.99864 * 8 7 6 37 37 H 1.08998 * 108.44673 * 188.76483 * 9 8 7 38 38 H 1.09009 * 108.44407 * 306.25059 * 9 8 7 39 39 H 0.97005 * 119.99614 * 5.23405 * 13 11 10 40 40 H 1.07995 * 120.66792 * 0.02562 * 15 14 13 41 41 H 0.97003 * 120.00089 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.43631 * 179.75801 * 25 16 15 43 43 H 1.08007 * 119.37344 * 179.97438 * 26 25 16 44 44 H 1.08994 * 109.96560 * 318.47965 * 28 10 9 45 45 H 1.08995 * 109.96412 * 197.17341 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2926 1.1338 0.0000 4 6 3.5414 0.7315 -0.0114 5 6 3.5408 -0.6584 -0.0183 6 6 2.2571 -1.0854 -0.0005 7 6 1.8365 -2.5392 0.0337 8 6 2.3051 -3.1259 1.3735 9 6 3.7684 -3.5159 1.3068 10 7 4.6873 -2.3994 1.1773 11 6 5.5098 -2.0933 2.2002 12 8 5.4173 -2.6915 3.2545 13 7 6.4347 -1.1238 2.0542 14 6 7.3567 -0.8808 3.0719 15 6 8.2302 0.1904 2.9644 16 6 9.1488 0.4204 4.0068 17 6 10.0589 1.5030 3.9508 18 1 11.0108 1.4349 4.4564 19 6 9.7250 2.6623 3.2398 20 7 8.5073 2.8274 2.7933 21 14 11.0194 3.9728 2.9292 22 1 12.1413 3.3864 2.1528 23 1 10.4167 5.0915 2.1610 24 1 11.5292 4.4825 4.2275 25 6 9.1385 -0.4646 5.1065 26 6 8.2440 -1.4966 5.1211 27 7 7.3922 -1.6794 4.1285 28 6 4.7332 -1.5972 -0.0573 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 4.4145 1.3672 -0.0140 33 1 0.7516 -2.6123 -0.0430 34 1 2.3035 -3.0789 -0.7901 35 1 2.1673 -2.3824 2.1586 36 1 1.7089 -4.0081 1.6071 37 1 4.0203 -4.0666 2.2131 38 1 3.9104 -4.1774 0.4521 39 1 6.4589 -0.5951 1.2413 40 1 8.2034 0.8385 2.1010 41 1 8.2761 3.6302 2.3004 42 1 9.8287 -0.3272 5.9258 43 1 8.2329 -2.1763 5.9604 44 1 4.6649 -2.2495 -0.9278 45 1 5.6584 -1.0222 -0.0934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871734661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:15 Heat of formation + Delta-G solvation = 83.880357 kcal Electronic energy + Delta-G solvation = -29738.758359 eV Core-core repulsion = 25757.776091 eV Total energy + Delta-G solvation = -3980.982268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.57080 -41.41730 -39.92533 -37.52590 -36.11487 -35.70058 -34.93416 -33.53401 -32.39016 -31.94795 -30.34199 -28.35556 -27.88823 -26.95046 -26.01130 -24.07471 -23.78268 -22.47777 -21.93220 -20.78636 -20.21405 -19.51208 -19.05032 -17.92340 -17.58976 -17.05871 -16.47376 -16.43209 -16.21721 -16.07469 -16.00929 -15.41573 -15.38478 -14.85178 -14.70269 -14.54721 -14.35892 -14.29557 -14.04005 -13.85456 -13.49166 -13.31591 -13.16373 -12.92557 -12.83833 -12.63064 -12.51743 -12.18903 -12.06813 -11.92815 -11.88461 -11.54261 -11.47536 -11.15908 -11.14361 -10.23566 -9.87209 -9.74000 -9.59001 -9.28772 -8.79134 -8.56874 -6.55280 0.85362 0.86406 1.03656 1.42394 1.50055 1.53923 1.59261 1.62776 1.91481 2.22238 2.30914 2.87312 2.94961 3.56800 3.63339 3.78198 3.92590 3.97710 4.02935 4.14205 4.27075 4.33687 4.38405 4.48725 4.51815 4.61896 4.63081 4.72935 4.84090 4.86305 4.87655 4.90717 4.95074 5.06690 5.11778 5.22878 5.25303 5.29542 5.51655 5.60672 5.68192 5.70160 5.89366 5.98118 6.14095 6.26776 6.57905 6.68967 6.81326 6.84870 6.90698 7.62769 7.92027 8.32671 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.003347 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.204796 B = 8362.744496 C =10029.284813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.373 5.373 3 N -0.343 5.343 4 C 0.049 3.951 5 C -0.283 4.283 6 C 0.102 3.898 7 C -0.048 4.048 8 C -0.119 4.119 9 C 0.121 3.879 10 N -0.614 5.614 11 C 0.691 3.309 12 O -0.583 6.583 13 N -0.661 5.661 14 C 0.352 3.648 15 C -0.256 4.256 16 C 0.117 3.883 17 C -0.486 4.486 18 H 0.084 0.916 19 C 0.038 3.962 20 N -0.820 5.820 21 Si 0.989 3.011 22 H -0.257 1.257 23 H -0.268 1.268 24 H -0.262 1.262 25 C -0.296 4.296 26 C 0.113 3.887 27 N -0.578 5.578 28 C 0.192 3.808 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.186 0.814 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.030 0.970 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.415 0.585 40 H 0.124 0.876 41 H 0.290 0.710 42 H 0.116 0.884 43 H 0.148 0.852 44 H 0.122 0.878 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.978 -7.604 -13.487 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.154 5.154 3 N -0.165 5.165 4 C -0.135 4.135 5 C -0.296 4.296 6 C -0.029 4.029 7 C -0.086 4.086 8 C -0.159 4.159 9 C -0.002 4.002 10 N -0.351 5.351 11 C 0.392 3.608 12 O -0.458 6.458 13 N -0.311 5.311 14 C 0.125 3.875 15 C -0.282 4.282 16 C 0.109 3.891 17 C -0.517 4.517 18 H 0.102 0.898 19 C -0.178 4.178 20 N -0.446 5.446 21 Si 0.809 3.191 22 H -0.181 1.181 23 H -0.192 1.192 24 H -0.186 1.186 25 C -0.320 4.320 26 C -0.041 4.041 27 N -0.298 5.298 28 C 0.069 3.931 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.203 0.797 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.049 0.951 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.255 0.745 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.165 0.835 44 H 0.140 0.860 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.835 -7.619 -12.851 22.508 hybrid contribution 1.652 1.530 0.011 2.252 sum -15.182 -6.089 -12.840 20.795 Atomic orbital electron populations 1.22194 0.72350 1.06255 1.04248 1.48666 1.07757 1.03141 1.55809 1.77540 1.02246 1.09137 1.27601 1.23817 0.95508 0.95334 0.98810 1.20474 0.95743 0.93726 1.19650 1.21607 0.90540 0.92230 0.98504 1.20797 1.03370 0.85343 0.99115 1.21687 0.95990 1.01935 0.96265 1.20899 0.88496 0.86880 1.03965 1.47145 1.38834 1.34658 1.14496 1.16265 0.79809 0.80460 0.84246 1.90935 1.72676 1.54799 1.27385 1.42659 1.31569 1.37257 1.19661 1.18204 0.89333 0.91538 0.88419 1.21506 1.03815 1.00030 1.02875 1.17996 0.90713 0.91198 0.89209 1.19825 1.03220 0.98930 1.29732 0.89777 1.26804 0.97729 1.01185 0.92105 1.69803 1.19799 1.27800 1.27168 0.85150 0.78126 0.76391 0.79429 1.18115 1.19206 1.18620 1.21882 1.06520 1.02625 1.00951 1.21919 0.90849 0.95801 0.95490 1.67314 1.27428 1.31535 1.03499 1.20336 0.94450 0.91597 0.86739 0.90465 0.88936 0.86037 0.79739 0.87601 0.86309 0.95123 0.86694 0.91718 0.88018 0.74508 0.85792 0.89910 0.86577 0.83502 0.85991 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 11.21 127.77 1.43 2.56 16 2 N -0.37 -8.44 4.01 -355.71 -1.43 -9.87 16 3 N -0.34 -10.27 12.60 -57.40 -0.72 -10.99 16 4 C 0.05 1.41 12.02 84.97 1.02 2.43 16 5 C -0.28 -6.93 5.64 -20.01 -0.11 -7.05 16 6 C 0.10 2.12 6.05 41.71 0.25 2.37 16 7 C -0.05 -0.55 5.77 30.26 0.17 -0.38 16 8 C -0.12 -1.98 5.80 30.33 0.18 -1.80 16 9 C 0.12 2.62 5.63 86.16 0.48 3.11 16 10 N -0.61 -17.37 2.67 -846.12 -2.26 -19.63 16 11 C 0.69 28.26 8.20 179.05 1.47 29.73 16 12 O -0.58 -29.15 13.92 -3.96 -0.06 -29.21 16 13 N -0.66 -27.92 5.28 -322.37 -1.70 -29.63 16 14 C 0.35 18.14 7.40 132.76 0.98 19.13 16 15 C -0.26 -13.65 8.60 23.00 0.20 -13.45 16 16 C 0.12 6.43 5.58 -21.11 -0.12 6.31 16 17 C -0.49 -25.67 9.13 23.52 0.21 -25.45 16 18 H 0.08 4.22 7.87 -2.91 -0.02 4.20 16 19 C 0.04 1.85 5.30 85.29 0.45 2.30 16 20 N -0.82 -41.46 10.84 21.84 0.24 -41.22 16 21 Si 0.99 36.82 29.57 68.60 2.03 38.85 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 23 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 C -0.30 -15.16 9.85 22.60 0.22 -14.94 16 26 C 0.11 5.67 11.10 84.27 0.94 6.61 16 27 N -0.58 -31.26 7.90 -194.27 -1.53 -32.80 16 28 C 0.19 4.15 6.10 85.83 0.52 4.67 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.12 0.61 7.19 -2.39 -0.02 0.60 16 32 H 0.19 4.87 8.06 -2.91 -0.02 4.85 16 33 H 0.11 0.62 6.98 -2.38 -0.02 0.61 16 34 H 0.12 0.84 7.92 -2.39 -0.02 0.82 16 35 H 0.03 0.75 7.89 -2.38 -0.02 0.73 16 36 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.83 6.85 -2.39 -0.02 1.81 16 38 H 0.10 1.43 8.02 -2.38 -0.02 1.41 16 39 H 0.42 14.75 6.15 -92.70 -0.57 14.18 16 40 H 0.12 6.55 6.28 -2.91 -0.02 6.53 16 41 H 0.29 13.25 8.29 -92.71 -0.77 12.48 16 42 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 43 H 0.15 6.39 8.06 -2.91 -0.02 6.36 16 44 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.08 1.82 5.71 -2.39 -0.01 1.81 16 Total: -1.00 -81.19 367.37 3.35 -77.84 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: 0.47 Total: 40.50 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 8.31 Total: 16.15 kcal Atomic # 7 Polarization: -136.73 SS G_CDS: -7.41 Total: -144.14 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.06 Total: -29.21 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -81.19 3.35 -77.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.723 kcal (2) G-P(sol) polarization free energy of solvation -81.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds