Wall clock time and date at job start Wed Apr 1 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47110 * 2 1 4 4 C 1.34221 * 116.99889 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00243 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.00018 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.46963 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47653 * 54.89273 * 7 6 4 9 9 C 1.50702 * 109.46954 * 174.89304 * 7 6 4 10 10 H 1.08000 * 119.99855 * 245.40504 * 9 7 6 11 11 C 1.37874 * 120.00260 * 65.40571 * 9 7 6 12 12 N 1.31519 * 120.00081 * 6.29972 * 11 9 7 13 13 Si 1.86795 * 120.00507 * 186.30191 * 11 9 7 14 14 H 1.48496 * 109.47198 * 84.97988 * 13 11 9 15 15 H 1.48493 * 109.47391 * 204.98713 * 13 11 9 16 16 H 1.48504 * 109.46956 * 324.98520 * 13 11 9 17 17 O 1.45199 * 109.47252 * 294.89123 * 7 6 4 18 18 C 1.34226 * 116.99955 * 150.00333 * 17 7 6 19 19 O 1.20817 * 120.00306 * 0.02562 * 18 17 7 20 20 C 1.50706 * 119.99945 * 179.97438 * 18 17 7 21 21 H 1.09007 * 110.21368 * 58.06749 * 20 18 17 22 22 C 1.54483 * 110.24540 * 296.04844 * 20 18 17 23 23 C 1.54623 * 101.76427 * 266.41246 * 22 20 18 24 24 C 1.51277 * 104.19804 * 335.20355 * 23 22 20 25 25 O 1.21282 * 124.94429 * 196.27158 * 24 23 22 26 26 N 1.34422 * 110.11709 * 16.25245 * 24 23 22 27 27 C 1.46499 * 124.35227 * 180.43009 * 26 24 23 28 28 C 1.52993 * 109.47073 * 299.97310 * 27 26 24 29 29 C 1.53002 * 109.46965 * 59.97278 * 27 26 24 30 30 H 1.08999 * 109.47539 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47309 * 300.00092 * 1 2 3 32 32 H 1.09006 * 109.47005 * 60.00176 * 1 2 3 33 33 H 1.09002 * 109.47309 * 239.99908 * 2 1 3 34 34 H 1.08998 * 109.46647 * 119.99740 * 2 1 3 35 35 H 1.08999 * 109.46629 * 60.00310 * 6 4 3 36 36 H 1.09005 * 109.47020 * 300.00347 * 6 4 3 37 37 H 0.96990 * 120.00565 * 179.97438 * 12 11 9 38 38 H 1.08996 * 110.96995 * 24.53550 * 22 20 18 39 39 H 1.09000 * 110.96716 * 148.29424 * 22 20 18 40 40 H 1.08998 * 110.48898 * 216.52404 * 23 22 20 41 41 H 1.08997 * 110.59776 * 93.93640 * 23 22 20 42 42 H 1.09001 * 109.47296 * 179.97438 * 27 26 24 43 43 H 1.09001 * 109.47159 * 59.99794 * 28 27 26 44 44 H 1.09002 * 109.47440 * 179.97438 * 28 27 26 45 45 H 1.09004 * 109.47323 * 299.99958 * 28 27 26 46 46 H 1.08998 * 109.47151 * 60.00274 * 29 27 26 47 47 H 1.09005 * 109.46730 * 179.97438 * 29 27 26 48 48 H 1.08995 * 109.47454 * 300.00078 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7806 2.2477 -0.8403 9 6 6.0243 4.2442 -0.1269 10 1 6.5865 4.5169 -1.0078 11 6 5.8335 5.1649 0.8815 12 7 5.2578 4.7989 2.0059 13 14 6.3925 6.9323 0.6507 14 1 5.3341 7.6980 -0.0554 15 1 6.6474 7.5481 1.9777 16 1 7.6405 6.9557 -0.1538 17 8 5.9017 2.2571 1.2422 18 6 7.0463 1.5573 1.1988 19 8 7.6498 1.4502 0.1577 20 6 7.5792 0.9061 2.4491 21 1 6.8425 0.2135 2.8564 22 6 7.9428 1.9804 3.4980 23 6 9.4459 2.2039 3.2124 24 6 9.8984 0.9099 2.5726 25 8 11.0538 0.5622 2.4505 26 7 8.8334 0.2012 2.1596 27 6 8.9144 -1.1070 1.5051 28 6 9.7200 -0.9805 0.2106 29 6 9.6038 -2.1030 2.4397 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5844 3.4700 0.8895 36 1 3.5851 3.4691 -0.8905 37 1 5.1239 5.4464 2.7154 38 1 7.3740 2.8953 3.3326 39 1 7.7895 1.6052 4.5099 40 1 9.9885 2.3805 4.1411 41 1 9.5857 3.0384 2.5254 42 1 7.9095 -1.4607 1.2745 43 1 10.7249 -0.6268 0.4412 44 1 9.7807 -1.9539 -0.2762 45 1 9.2289 -0.2709 -0.4552 46 1 9.0298 -2.1931 3.3619 47 1 9.6636 -3.0765 1.9528 48 1 10.6086 -1.7494 2.6703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873550609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:40 Heat of formation + Delta-G solvation = -212.479758 kcal Electronic energy + Delta-G solvation = -32104.163656 eV Core-core repulsion = 27738.435827 eV Total energy + Delta-G solvation = -4365.727829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64348 -39.89577 -38.66682 -36.43885 -35.96332 -35.08785 -34.76698 -33.05613 -31.68570 -30.48546 -29.78715 -28.01017 -26.93550 -26.28018 -23.47791 -22.89537 -22.14849 -21.81544 -20.40219 -19.75651 -18.45320 -17.31734 -17.15214 -16.60755 -16.45340 -16.21155 -15.60392 -15.48180 -15.03694 -14.84751 -14.45965 -14.27092 -13.93461 -13.85041 -13.49584 -13.28105 -13.12938 -12.83603 -12.74612 -12.61203 -12.36737 -12.10999 -11.91536 -11.86518 -11.60167 -11.52094 -11.37387 -11.31792 -11.08214 -11.06316 -10.98599 -10.88232 -10.86553 -10.75761 -10.28677 -10.23339 -9.81990 -9.53692 -9.48081 -9.29504 -8.89337 -8.74643 -8.41240 -6.30410 -4.46830 2.82925 2.89245 3.09196 3.13909 3.22277 3.23690 3.28466 3.33823 3.95716 4.21435 4.58333 4.78028 4.98973 5.01387 5.07803 5.09037 5.19156 5.28225 5.30680 5.31773 5.38679 5.44524 5.62639 5.75316 5.78060 5.82620 5.86497 5.89361 5.92049 5.99313 6.01277 6.15822 6.17433 6.21674 6.33331 6.38115 6.46427 6.64400 6.78202 6.88090 6.91051 7.12600 7.38989 7.61248 7.85809 7.94634 8.39690 8.45643 8.59187 9.06768 9.29069 10.71943 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.004966 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.154712 B = 5637.255194 C = 8173.270932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.458 3.542 5 O -0.516 6.516 6 C -0.098 4.098 7 C 0.233 3.767 8 H 0.045 0.955 9 C -0.549 4.549 10 H 0.069 0.931 11 C 0.084 3.916 12 N -0.853 5.853 13 Si 0.892 3.108 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.272 1.272 17 O -0.319 6.319 18 C 0.452 3.548 19 O -0.517 6.517 20 C 0.137 3.863 21 H 0.112 0.888 22 C -0.118 4.118 23 C -0.159 4.159 24 C 0.527 3.473 25 O -0.536 6.536 26 N -0.592 5.592 27 C 0.157 3.843 28 C -0.167 4.167 29 C -0.164 4.164 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.266 0.734 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -8.140 3.263 9.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.303 3.697 5 O -0.403 6.403 6 C -0.136 4.136 7 C 0.180 3.820 8 H 0.063 0.937 9 C -0.586 4.586 10 H 0.087 0.913 11 C -0.124 4.124 12 N -0.488 5.488 13 Si 0.718 3.282 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.197 1.197 17 O -0.233 6.233 18 C 0.293 3.707 19 O -0.407 6.407 20 C 0.031 3.969 21 H 0.130 0.870 22 C -0.155 4.155 23 C -0.199 4.199 24 C 0.316 3.684 25 O -0.414 6.414 26 N -0.325 5.325 27 C 0.055 3.945 28 C -0.225 4.225 29 C -0.222 4.222 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.378 -8.667 3.011 9.777 hybrid contribution 0.082 0.820 -0.242 0.859 sum -3.295 -7.846 2.769 8.950 Atomic orbital electron populations 1.21782 0.93239 1.02383 1.03357 1.22867 0.94899 0.81670 1.02060 1.86576 1.26055 1.31110 1.84653 1.24849 0.79520 0.94234 0.71138 1.90591 1.60264 1.43628 1.45848 1.21831 0.96989 0.88260 1.06502 1.20021 0.87661 0.92689 0.81675 0.93719 1.21332 1.36535 0.95086 1.05620 0.91287 1.25071 0.93765 0.98935 0.94625 1.70011 1.40157 1.34498 1.04167 0.86606 0.79558 0.84175 0.77821 1.20074 1.20877 1.19691 1.86577 1.36253 1.59222 1.41233 1.23199 0.81155 0.76799 0.89590 1.90529 1.58679 1.59027 1.32470 1.21187 0.87327 0.95331 0.93031 0.87010 1.22606 0.95355 0.99999 0.97579 1.22398 0.97220 0.97254 1.02997 1.20811 0.84599 0.85570 0.77427 1.90642 1.18586 1.73889 1.58271 1.48155 1.06240 1.18981 1.59157 1.20880 1.00210 0.81008 0.92417 1.22176 1.01459 1.02086 0.96812 1.22180 1.02190 0.98493 0.99345 0.90803 0.91575 0.91684 0.91844 0.91712 0.85424 0.87691 0.92383 0.86520 0.89370 0.88084 0.87531 0.89831 0.91526 0.92365 0.90637 0.92688 0.91672 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -6.27 10.22 -39.23 -0.40 -6.68 16 4 C 0.46 9.11 7.84 36.01 0.28 9.39 16 5 O -0.52 -11.33 15.17 -23.92 -0.36 -11.69 16 6 C -0.10 -2.05 5.30 -27.88 -0.15 -2.20 16 7 C 0.23 5.57 1.65 -27.88 -0.05 5.52 16 8 H 0.04 1.15 6.97 -51.93 -0.36 0.79 16 9 C -0.55 -13.89 8.88 -34.44 -0.31 -14.20 16 10 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 11 C 0.08 2.03 5.23 -17.82 -0.09 1.94 16 12 N -0.85 -20.65 11.22 55.43 0.62 -20.03 16 13 Si 0.89 19.21 29.54 -169.99 -5.02 14.19 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 O -0.32 -7.47 7.90 -44.42 -0.35 -7.82 16 18 C 0.45 9.93 7.19 36.01 0.26 10.19 16 19 O -0.52 -12.68 14.31 -18.74 -0.27 -12.95 16 20 C 0.14 2.36 3.56 -68.16 -0.24 2.12 16 21 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 22 C -0.12 -1.77 6.69 -25.10 -0.17 -1.94 16 23 C -0.16 -2.45 6.85 -26.75 -0.18 -2.64 16 24 C 0.53 9.45 7.41 -10.86 -0.08 9.37 16 25 O -0.54 -10.77 15.12 5.56 0.08 -10.69 16 26 N -0.59 -10.10 2.02 -158.67 -0.32 -10.43 16 27 C 0.16 2.45 3.33 -67.93 -0.23 2.22 16 28 C -0.17 -2.75 9.20 37.15 0.34 -2.41 16 29 C -0.16 -2.15 9.20 37.16 0.34 -1.81 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 34 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 35 H 0.13 2.81 6.89 -51.93 -0.36 2.45 16 36 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 37 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 38 H 0.12 2.03 7.76 -51.93 -0.40 1.63 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 42 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 43 H 0.07 1.18 6.78 -51.93 -0.35 0.83 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.45 6.84 -51.93 -0.36 1.09 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.07 1.06 6.80 -51.93 -0.35 0.70 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -30.45 397.71 -7.33 -37.77 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.64 Total: 6.84 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 0.34 Total: 15.48 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.30 Total: -30.46 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -1.30 Total: -49.82 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.45 -7.33 -37.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873550609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.709 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds