Wall clock time and date at job start Wed Apr 1 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47110 * 2 1 4 4 C 1.34221 * 116.99889 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00243 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.00018 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.46963 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47653 * 54.89273 * 7 6 4 9 9 C 1.50702 * 109.46954 * 174.89304 * 7 6 4 10 10 H 1.08000 * 119.99855 * 245.40504 * 9 7 6 11 11 C 1.37874 * 120.00260 * 65.40571 * 9 7 6 12 12 N 1.31519 * 120.00081 * 6.29972 * 11 9 7 13 13 Si 1.86795 * 120.00507 * 186.30191 * 11 9 7 14 14 H 1.48496 * 109.47198 * 84.97988 * 13 11 9 15 15 H 1.48493 * 109.47391 * 204.98713 * 13 11 9 16 16 H 1.48504 * 109.46956 * 324.98520 * 13 11 9 17 17 O 1.45199 * 109.47252 * 294.89123 * 7 6 4 18 18 C 1.34226 * 116.99955 * 150.00333 * 17 7 6 19 19 O 1.20817 * 120.00306 * 0.02562 * 18 17 7 20 20 C 1.50706 * 119.99945 * 179.97438 * 18 17 7 21 21 H 1.09007 * 110.21368 * 58.06749 * 20 18 17 22 22 C 1.54483 * 110.24540 * 296.04844 * 20 18 17 23 23 C 1.54623 * 101.76427 * 266.41246 * 22 20 18 24 24 C 1.51277 * 104.19804 * 335.20355 * 23 22 20 25 25 O 1.21282 * 124.94429 * 196.27158 * 24 23 22 26 26 N 1.34422 * 110.11709 * 16.25245 * 24 23 22 27 27 C 1.46499 * 124.35227 * 180.43009 * 26 24 23 28 28 C 1.52993 * 109.47073 * 299.97310 * 27 26 24 29 29 C 1.53002 * 109.46965 * 59.97278 * 27 26 24 30 30 H 1.08999 * 109.47539 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47309 * 300.00092 * 1 2 3 32 32 H 1.09006 * 109.47005 * 60.00176 * 1 2 3 33 33 H 1.09002 * 109.47309 * 239.99908 * 2 1 3 34 34 H 1.08998 * 109.46647 * 119.99740 * 2 1 3 35 35 H 1.08999 * 109.46629 * 60.00310 * 6 4 3 36 36 H 1.09005 * 109.47020 * 300.00347 * 6 4 3 37 37 H 0.96990 * 120.00565 * 179.97438 * 12 11 9 38 38 H 1.08996 * 110.96995 * 24.53550 * 22 20 18 39 39 H 1.09000 * 110.96716 * 148.29424 * 22 20 18 40 40 H 1.08998 * 110.48898 * 216.52404 * 23 22 20 41 41 H 1.08997 * 110.59776 * 93.93640 * 23 22 20 42 42 H 1.09001 * 109.47296 * 179.97438 * 27 26 24 43 43 H 1.09001 * 109.47159 * 59.99794 * 28 27 26 44 44 H 1.09002 * 109.47440 * 179.97438 * 28 27 26 45 45 H 1.09004 * 109.47323 * 299.99958 * 28 27 26 46 46 H 1.08998 * 109.47151 * 60.00274 * 29 27 26 47 47 H 1.09005 * 109.46730 * 179.97438 * 29 27 26 48 48 H 1.08995 * 109.47454 * 300.00078 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7806 2.2477 -0.8403 9 6 6.0243 4.2442 -0.1269 10 1 6.5865 4.5169 -1.0078 11 6 5.8335 5.1649 0.8815 12 7 5.2578 4.7989 2.0059 13 14 6.3925 6.9323 0.6507 14 1 5.3341 7.6980 -0.0554 15 1 6.6474 7.5481 1.9777 16 1 7.6405 6.9557 -0.1538 17 8 5.9017 2.2571 1.2422 18 6 7.0463 1.5573 1.1988 19 8 7.6498 1.4502 0.1577 20 6 7.5792 0.9061 2.4491 21 1 6.8425 0.2135 2.8564 22 6 7.9428 1.9804 3.4980 23 6 9.4459 2.2039 3.2124 24 6 9.8984 0.9099 2.5726 25 8 11.0538 0.5622 2.4505 26 7 8.8334 0.2012 2.1596 27 6 8.9144 -1.1070 1.5051 28 6 9.7200 -0.9805 0.2106 29 6 9.6038 -2.1030 2.4397 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5844 3.4700 0.8895 36 1 3.5851 3.4691 -0.8905 37 1 5.1239 5.4464 2.7154 38 1 7.3740 2.8953 3.3326 39 1 7.7895 1.6052 4.5099 40 1 9.9885 2.3805 4.1411 41 1 9.5857 3.0384 2.5254 42 1 7.9095 -1.4607 1.2745 43 1 10.7249 -0.6268 0.4412 44 1 9.7807 -1.9539 -0.2762 45 1 9.2289 -0.2709 -0.4552 46 1 9.0298 -2.1931 3.3619 47 1 9.6636 -3.0765 1.9528 48 1 10.6086 -1.7494 2.6703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873550609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:39 Heat of formation + Delta-G solvation = -228.030671 kcal Electronic energy + Delta-G solvation = -32104.837994 eV Core-core repulsion = 27738.435827 eV Total energy + Delta-G solvation = -4366.402167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09969 -41.42876 -40.34691 -37.97889 -37.44185 -36.83307 -36.03609 -34.91522 -32.93062 -32.05061 -31.06353 -29.45184 -28.13918 -28.07564 -24.97785 -24.16640 -23.43582 -23.23850 -21.92774 -21.44266 -19.83478 -19.01070 -18.78735 -18.23470 -17.88061 -17.61363 -17.16074 -17.12211 -16.58454 -16.43552 -16.09002 -15.81335 -15.23352 -15.18467 -14.76507 -14.67856 -14.51543 -14.19854 -14.11074 -13.91543 -13.69037 -13.62021 -13.39728 -13.02274 -12.97043 -12.86637 -12.80925 -12.76168 -12.64207 -12.50284 -12.44088 -12.37929 -12.14551 -12.12485 -12.05082 -11.52636 -11.46613 -11.39261 -11.14838 -10.74190 -10.70794 -10.62707 -9.86169 -8.18238 -6.41940 1.29477 1.37434 1.44231 1.47492 1.54137 1.61717 1.77853 1.82919 2.37196 2.41452 3.11965 3.26049 3.48024 3.84374 3.89049 3.94817 4.01364 4.03380 4.10228 4.13779 4.17404 4.24395 4.37198 4.41846 4.48527 4.57217 4.64590 4.70612 4.72576 4.84729 4.87320 4.88434 4.94754 4.95796 5.07499 5.10414 5.15123 5.16479 5.28279 5.31455 5.51855 5.56804 5.67458 5.97507 6.02554 6.16274 6.62691 6.86432 7.05961 7.25776 7.38897 8.83992 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.004966 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.154712 B = 5637.255194 C = 8173.270932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.364 6.364 4 C 0.466 3.534 5 O -0.541 6.541 6 C -0.090 4.090 7 C 0.234 3.766 8 H 0.013 0.987 9 C -0.578 4.578 10 H 0.047 0.953 11 C 0.059 3.941 12 N -0.859 5.859 13 Si 0.944 3.056 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.287 1.287 17 O -0.324 6.324 18 C 0.441 3.559 19 O -0.552 6.552 20 C 0.140 3.860 21 H 0.141 0.859 22 C -0.105 4.105 23 C -0.155 4.155 24 C 0.519 3.481 25 O -0.562 6.562 26 N -0.591 5.591 27 C 0.147 3.853 28 C -0.160 4.160 29 C -0.151 4.151 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.273 0.727 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 -8.825 5.185 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.281 6.281 4 C 0.311 3.689 5 O -0.431 6.431 6 C -0.128 4.128 7 C 0.181 3.819 8 H 0.031 0.969 9 C -0.615 4.615 10 H 0.065 0.935 11 C -0.148 4.148 12 N -0.493 5.493 13 Si 0.770 3.230 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.213 1.213 17 O -0.238 6.238 18 C 0.284 3.716 19 O -0.444 6.444 20 C 0.034 3.966 21 H 0.159 0.841 22 C -0.142 4.142 23 C -0.195 4.195 24 C 0.309 3.691 25 O -0.442 6.442 26 N -0.324 5.324 27 C 0.045 3.955 28 C -0.218 4.218 29 C -0.209 4.209 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.856 -9.355 4.946 11.643 hybrid contribution 0.489 0.962 -0.909 1.411 sum -4.367 -8.393 4.038 10.286 Atomic orbital electron populations 1.21811 0.90000 1.04402 1.03721 1.23284 0.97379 0.79622 1.02158 1.86546 1.24049 1.33591 1.83918 1.24454 0.80418 0.93332 0.70659 1.90577 1.61140 1.44198 1.47159 1.21609 0.95083 0.89318 1.06795 1.19875 0.89430 0.91516 0.81077 0.96850 1.21332 1.37960 0.96433 1.05744 0.93459 1.25490 0.93656 1.01456 0.94199 1.70044 1.39602 1.35470 1.04200 0.85803 0.78640 0.80677 0.77904 1.19036 1.19766 1.21259 1.86565 1.37012 1.59543 1.40688 1.24292 0.80297 0.76100 0.90959 1.90518 1.59345 1.60244 1.34341 1.21382 0.87854 0.96312 0.91028 0.84141 1.22607 0.94251 0.98369 0.98987 1.22430 0.98000 0.95221 1.03830 1.21230 0.84358 0.86238 0.77314 1.90623 1.19580 1.74602 1.59406 1.48315 1.06026 1.19336 1.58683 1.21121 1.00662 0.81170 0.92537 1.22092 1.00039 1.02556 0.97105 1.22072 1.00771 0.98513 0.99532 0.87915 0.91276 0.91247 0.91786 0.91711 0.86172 0.86270 0.91757 0.88797 0.84932 0.84820 0.89397 0.89259 0.93288 0.89522 0.94180 0.91119 0.89267 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.29 71.98 0.74 -1.71 16 2 C 0.05 1.26 6.19 71.98 0.45 1.71 16 3 O -0.36 -12.16 10.22 -51.33 -0.52 -12.69 16 4 C 0.47 18.64 7.84 71.24 0.56 19.20 16 5 O -0.54 -24.11 15.17 26.89 0.41 -23.70 16 6 C -0.09 -3.85 5.30 29.85 0.16 -3.69 16 7 C 0.23 11.66 1.65 29.85 0.05 11.71 16 8 H 0.01 0.73 6.97 -2.38 -0.02 0.72 16 9 C -0.58 -30.33 8.88 25.60 0.23 -30.10 16 10 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 11 C 0.06 2.90 5.23 84.65 0.44 3.34 16 12 N -0.86 -41.24 11.22 21.45 0.24 -41.00 16 13 Si 0.94 39.42 29.54 68.60 2.03 41.44 16 14 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 15 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 16 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 17 O -0.32 -15.53 7.90 -46.44 -0.37 -15.90 16 18 C 0.44 19.84 7.19 71.24 0.51 20.35 16 19 O -0.55 -28.50 14.31 21.99 0.31 -28.18 16 20 C 0.14 4.69 3.56 44.70 0.16 4.85 16 21 H 0.14 3.92 8.14 -2.38 -0.02 3.90 16 22 C -0.10 -2.95 6.69 31.65 0.21 -2.74 16 23 C -0.15 -4.62 6.85 30.58 0.21 -4.41 16 24 C 0.52 18.38 7.41 87.90 0.65 19.04 16 25 O -0.56 -22.67 15.12 -3.04 -0.05 -22.71 16 26 N -0.59 -19.83 2.02 -774.50 -1.57 -21.40 16 27 C 0.15 4.47 3.33 44.99 0.15 4.62 16 28 C -0.16 -5.36 9.20 71.98 0.66 -4.70 16 29 C -0.15 -3.65 9.20 71.98 0.66 -2.99 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 34 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 35 H 0.12 5.32 6.89 -2.39 -0.02 5.30 16 36 H 0.12 4.61 8.14 -2.38 -0.02 4.59 16 37 H 0.27 12.27 8.31 -92.72 -0.77 11.50 16 38 H 0.09 3.18 7.76 -2.39 -0.02 3.16 16 39 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.09 2.62 8.07 -2.39 -0.02 2.60 16 43 H 0.05 1.79 6.78 -2.39 -0.02 1.77 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.04 1.61 6.84 -2.39 -0.02 1.59 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.09 1.71 8.14 -2.38 -0.02 1.70 16 48 H 0.05 1.48 6.80 -2.39 -0.02 1.46 16 Total: -1.00 -68.95 397.71 7.28 -61.67 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.96 Total: 27.98 kcal Atomic # 6 Polarization: 28.65 SS G_CDS: 5.84 Total: 34.49 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -1.33 Total: -62.40 kcal Atomic # 8 Polarization: -102.96 SS G_CDS: -0.21 Total: -103.18 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.44 kcal Total: -68.95 7.28 -61.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873550609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.365 kcal (2) G-P(sol) polarization free energy of solvation -68.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds