Wall clock time and date at job start Wed Apr 1 2020 00:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47463 * 2 1 4 4 C 1.46500 * 120.00427 * 270.00216 * 3 2 1 5 5 C 1.52996 * 109.47474 * 269.99918 * 4 3 2 6 6 C 1.38613 * 119.99641 * 90.00335 * 3 2 1 7 7 N 1.29686 * 124.95152 * 0.02562 * 6 3 2 8 8 C 1.32126 * 116.86429 * 180.02562 * 7 6 3 9 9 C 1.33323 * 114.58222 * 0.02562 * 8 7 6 10 10 C 1.50702 * 125.95159 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47075 * 90.02165 * 10 9 8 12 12 C 1.36941 * 119.99875 * 89.99662 * 11 10 9 13 13 H 1.07999 * 119.99847 * 33.59946 * 12 11 10 14 14 C 1.38808 * 119.99975 * 213.31620 * 12 11 10 15 15 N 1.31621 * 120.00105 * 23.95929 * 14 12 11 16 16 Si 1.86802 * 120.00174 * 203.95160 * 14 12 11 17 17 H 1.48500 * 109.46788 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47116 * 120.00065 * 16 14 12 19 19 H 1.48499 * 109.47063 * 240.00320 * 16 14 12 20 20 C 1.46496 * 119.99801 * 270.00212 * 11 10 9 21 21 C 1.53002 * 109.47014 * 275.33496 * 20 11 10 22 22 C 1.50700 * 109.46963 * 180.02562 * 21 20 11 23 23 O 1.20829 * 120.00187 * 0.02562 * 22 21 20 24 24 O 1.34226 * 119.99552 * 179.97438 * 22 21 20 25 25 C 1.45211 * 116.99973 * 179.97438 * 24 22 21 26 26 S 1.70975 * 124.94826 * 180.34306 * 6 3 2 27 27 H 1.08997 * 109.47614 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47195 * 299.99825 * 1 2 3 29 29 H 1.09006 * 109.47306 * 59.99303 * 1 2 3 30 30 H 1.09002 * 109.46777 * 240.00511 * 2 1 3 31 31 H 1.08998 * 109.47032 * 120.00624 * 2 1 3 32 32 H 1.09001 * 109.46667 * 29.99931 * 4 3 2 33 33 H 1.09000 * 109.47472 * 149.99617 * 4 3 2 34 34 H 1.08991 * 109.47300 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46962 * 300.00146 * 5 4 3 36 36 H 1.09000 * 109.47017 * 59.99421 * 5 4 3 37 37 H 1.07998 * 122.70284 * 179.97438 * 8 7 6 38 38 H 1.08989 * 109.47005 * 330.02216 * 10 9 8 39 39 H 1.08997 * 109.47121 * 210.02137 * 10 9 8 40 40 H 0.96996 * 120.00347 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.47666 * 35.33791 * 20 11 10 42 42 H 1.09004 * 109.47090 * 155.33473 * 20 11 10 43 43 H 1.09005 * 109.47076 * 300.00092 * 21 20 11 44 44 H 1.08992 * 109.46971 * 60.00295 * 21 20 11 45 45 H 1.09001 * 109.46820 * 59.99894 * 25 24 22 46 46 H 1.08999 * 109.47010 * 179.97438 * 25 24 22 47 47 H 1.08993 * 109.47093 * 300.00375 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2494 2.0344 1.2005 7 7 2.0669 1.5165 2.3753 8 6 2.3381 2.2851 3.4153 9 6 2.7688 3.5078 3.1040 10 6 3.1502 4.5876 4.0837 11 7 4.5766 4.4786 4.3997 12 6 5.4984 5.1552 3.6461 13 1 5.2496 6.1180 3.2249 14 6 6.7546 4.6061 3.4286 15 7 6.9271 3.3039 3.5118 16 14 8.2003 5.7153 3.0175 17 1 7.7461 7.1288 2.9847 18 1 9.2543 5.5585 4.0518 19 1 8.7499 5.3405 1.6899 20 6 5.0167 3.6459 5.5216 21 6 4.9336 4.4527 6.8190 22 6 5.3870 3.5962 7.9731 23 8 5.7408 2.4575 7.7779 24 8 5.3987 4.0987 9.2177 25 6 5.8468 3.2167 10.2806 26 16 2.8094 3.6431 1.3481 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0283 33 1 2.0956 3.1410 -1.1383 34 1 3.8890 2.3449 -2.6545 35 1 4.3883 2.2154 -0.9508 36 1 3.8744 0.7622 -1.8408 37 1 2.2195 1.9500 4.4351 38 1 2.5660 4.4726 4.9966 39 1 2.9490 5.5645 3.6442 40 1 7.8048 2.9202 3.3594 41 1 4.3740 2.7689 5.5974 42 1 6.0464 3.3284 5.3565 43 1 5.5765 5.3297 6.7433 44 1 3.9040 4.7700 6.9841 45 1 6.8710 2.9005 10.0827 46 1 5.8078 3.7460 11.2326 47 1 5.1985 2.3416 10.3241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877708982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:44 Heat of formation + Delta-G solvation = -15.504860 kcal Electronic energy + Delta-G solvation = -27930.017996 eV Core-core repulsion = 24047.877262 eV Total energy + Delta-G solvation = -3882.140734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.94555 -39.02088 -37.12485 -36.31803 -35.59555 -32.06551 -31.87192 -31.31324 -29.76623 -28.32367 -27.33804 -25.36119 -24.39330 -23.84745 -23.25085 -21.37664 -21.04144 -19.83824 -18.68657 -17.47170 -17.30246 -16.55067 -16.14913 -16.00798 -15.66039 -15.40790 -14.88210 -14.33814 -14.01718 -13.97477 -13.69547 -13.56724 -13.49518 -13.25163 -12.85693 -12.82345 -12.49241 -12.32884 -12.05245 -11.98205 -11.89458 -11.67997 -11.50570 -11.27651 -11.09313 -10.97070 -10.89066 -10.78068 -10.49557 -10.36557 -10.20060 -10.00858 -9.93809 -9.77461 -9.33812 -8.83491 -8.55781 -8.28012 -6.97033 -6.75161 -5.88437 -3.39787 1.81140 1.98625 2.70244 2.74408 3.15498 3.25695 3.32479 3.41332 3.42711 3.79263 4.42985 4.84367 5.11075 5.17651 5.20804 5.26675 5.30227 5.33144 5.37385 5.40058 5.46538 5.52656 5.58041 5.68077 5.72238 5.85342 5.89294 5.92147 6.00092 6.04345 6.11001 6.22273 6.26427 6.32082 6.37483 6.52162 6.70630 6.79295 6.94729 7.00251 7.16756 7.56636 7.68446 7.74900 8.24739 8.39016 8.69537 9.05310 9.68543 10.24024 11.12102 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.003575 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.821061 B = 7831.365535 C = 9499.119505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 N -0.591 5.591 4 C 0.127 3.873 5 C -0.176 4.176 6 C 0.284 3.716 7 N -0.544 5.544 8 C 0.046 3.954 9 C -0.220 4.220 10 C 0.213 3.787 11 N -0.565 5.565 12 C -0.266 4.266 13 H 0.068 0.932 14 C 0.017 3.983 15 N -0.869 5.869 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.289 1.289 20 C 0.158 3.842 21 C -0.131 4.131 22 C 0.460 3.540 23 O -0.506 6.506 24 O -0.370 6.370 25 C 0.035 3.965 26 S 0.096 5.904 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.158 0.842 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.256 0.744 41 H 0.034 0.966 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -0.943 -2.008 9.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 N -0.313 5.313 4 C 0.003 3.997 5 C -0.235 4.235 6 C -0.084 4.084 7 N -0.268 5.268 8 C -0.103 4.103 9 C -0.346 4.346 10 C 0.084 3.916 11 N -0.283 5.283 12 C -0.396 4.396 13 H 0.085 0.915 14 C -0.185 4.185 15 N -0.509 5.509 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.216 1.216 20 C 0.031 3.969 21 C -0.171 4.171 22 C 0.303 3.697 23 O -0.393 6.393 24 O -0.287 6.287 25 C -0.059 4.059 26 S 0.346 5.654 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.175 0.825 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.112 0.888 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.100 -1.217 -2.856 9.615 hybrid contribution 1.007 -0.276 0.769 1.296 sum -8.093 -1.493 -2.088 8.491 Atomic orbital electron populations 1.22153 0.96752 1.01425 1.02037 1.21248 0.93605 0.81824 1.02457 1.45750 1.71835 1.13192 1.00548 1.21401 0.96769 0.97124 0.84363 1.22264 0.97256 1.02159 1.01794 1.23417 1.00148 0.95198 0.89679 1.66230 1.27341 1.36626 0.96643 1.20935 1.02642 0.89603 0.97118 1.26851 1.09378 1.03406 0.94973 1.19562 0.86764 0.92879 0.92401 1.44118 1.00246 1.54543 1.29377 1.19110 0.92820 0.98449 1.29246 0.91455 1.25163 0.99763 0.94855 0.98737 1.70059 1.22584 1.09219 1.49031 0.86395 0.82938 0.80776 0.77731 1.19832 1.21358 1.21561 1.20774 1.04369 0.89966 0.81804 1.22361 1.02445 1.00537 0.91761 1.24464 0.74313 0.87537 0.83388 1.90653 1.43936 1.19902 1.84766 1.86565 1.78782 1.45724 1.17632 1.23137 1.00053 0.94314 0.88441 1.83722 1.65343 1.10322 1.06016 0.92207 0.92149 0.93195 0.91523 0.90042 0.90386 0.90943 0.91631 0.91541 0.92482 0.82523 0.92330 0.92565 0.93350 0.94742 0.87422 0.87995 0.89444 0.92272 0.88797 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.24 37.16 0.38 -1.47 16 2 C 0.13 1.73 6.25 -4.05 -0.03 1.71 16 3 N -0.59 -8.87 2.58 -176.03 -0.45 -9.32 16 4 C 0.13 1.52 6.10 -4.04 -0.02 1.50 16 5 C -0.18 -2.14 10.24 37.16 0.38 -1.76 16 6 C 0.28 5.29 7.74 -87.68 -0.68 4.61 16 7 N -0.54 -11.04 9.82 -15.20 -0.15 -11.19 16 8 C 0.05 0.94 11.24 -19.14 -0.22 0.73 16 9 C -0.22 -4.49 6.16 -36.02 -0.22 -4.71 16 10 C 0.21 4.21 6.21 -5.19 -0.03 4.17 16 11 N -0.57 -13.01 2.44 -174.61 -0.43 -13.43 16 12 C -0.27 -6.74 9.48 -15.06 -0.14 -6.88 16 13 H 0.07 1.70 7.93 -52.49 -0.42 1.28 16 14 C 0.02 0.45 4.88 -17.43 -0.09 0.37 16 15 N -0.87 -24.59 11.41 55.49 0.63 -23.96 16 16 Si 0.89 20.79 29.62 -169.99 -5.03 15.75 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 C 0.16 3.60 4.54 -4.04 -0.02 3.58 16 21 C -0.13 -2.43 6.13 -27.88 -0.17 -2.61 16 22 C 0.46 8.64 7.96 36.01 0.29 8.92 16 23 O -0.51 -11.02 15.73 -18.75 -0.29 -11.32 16 24 O -0.37 -5.94 10.57 -39.25 -0.41 -6.35 16 25 C 0.03 0.43 10.56 101.05 1.07 1.50 16 26 S 0.10 1.83 21.68 -107.50 -2.33 -0.50 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.08 1.23 7.62 -51.93 -0.40 0.83 16 32 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.07 0.88 7.04 -51.93 -0.37 0.52 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.16 2.99 8.06 -52.49 -0.42 2.57 16 38 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 39 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.11 2.90 5.32 -51.93 -0.28 2.62 16 43 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -31.54 407.02 -9.59 -41.14 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.76 Total: 3.40 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 0.50 Total: 9.65 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.40 Total: -57.90 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.71 Total: -17.67 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.75 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.33 Total: -0.50 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.54 -9.59 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877708982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.633 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds