Wall clock time and date at job start Wed Apr 1 2020 00:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47463 * 2 1 4 4 C 1.46500 * 120.00427 * 270.00216 * 3 2 1 5 5 C 1.52996 * 109.47474 * 269.99918 * 4 3 2 6 6 C 1.38613 * 119.99641 * 90.00335 * 3 2 1 7 7 N 1.29686 * 124.95152 * 0.02562 * 6 3 2 8 8 C 1.32126 * 116.86429 * 180.02562 * 7 6 3 9 9 C 1.33323 * 114.58222 * 0.02562 * 8 7 6 10 10 C 1.50702 * 125.95159 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47075 * 90.02165 * 10 9 8 12 12 C 1.36941 * 119.99875 * 89.99662 * 11 10 9 13 13 H 1.07999 * 119.99847 * 33.59946 * 12 11 10 14 14 C 1.38808 * 119.99975 * 213.31620 * 12 11 10 15 15 N 1.31621 * 120.00105 * 23.95929 * 14 12 11 16 16 Si 1.86802 * 120.00174 * 203.95160 * 14 12 11 17 17 H 1.48500 * 109.46788 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47116 * 120.00065 * 16 14 12 19 19 H 1.48499 * 109.47063 * 240.00320 * 16 14 12 20 20 C 1.46496 * 119.99801 * 270.00212 * 11 10 9 21 21 C 1.53002 * 109.47014 * 275.33496 * 20 11 10 22 22 C 1.50700 * 109.46963 * 180.02562 * 21 20 11 23 23 O 1.20829 * 120.00187 * 0.02562 * 22 21 20 24 24 O 1.34226 * 119.99552 * 179.97438 * 22 21 20 25 25 C 1.45211 * 116.99973 * 179.97438 * 24 22 21 26 26 S 1.70975 * 124.94826 * 180.34306 * 6 3 2 27 27 H 1.08997 * 109.47614 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47195 * 299.99825 * 1 2 3 29 29 H 1.09006 * 109.47306 * 59.99303 * 1 2 3 30 30 H 1.09002 * 109.46777 * 240.00511 * 2 1 3 31 31 H 1.08998 * 109.47032 * 120.00624 * 2 1 3 32 32 H 1.09001 * 109.46667 * 29.99931 * 4 3 2 33 33 H 1.09000 * 109.47472 * 149.99617 * 4 3 2 34 34 H 1.08991 * 109.47300 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46962 * 300.00146 * 5 4 3 36 36 H 1.09000 * 109.47017 * 59.99421 * 5 4 3 37 37 H 1.07998 * 122.70284 * 179.97438 * 8 7 6 38 38 H 1.08989 * 109.47005 * 330.02216 * 10 9 8 39 39 H 1.08997 * 109.47121 * 210.02137 * 10 9 8 40 40 H 0.96996 * 120.00347 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.47666 * 35.33791 * 20 11 10 42 42 H 1.09004 * 109.47090 * 155.33473 * 20 11 10 43 43 H 1.09005 * 109.47076 * 300.00092 * 21 20 11 44 44 H 1.08992 * 109.46971 * 60.00295 * 21 20 11 45 45 H 1.09001 * 109.46820 * 59.99894 * 25 24 22 46 46 H 1.08999 * 109.47010 * 179.97438 * 25 24 22 47 47 H 1.08993 * 109.47093 * 300.00375 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2494 2.0344 1.2005 7 7 2.0669 1.5165 2.3753 8 6 2.3381 2.2851 3.4153 9 6 2.7688 3.5078 3.1040 10 6 3.1502 4.5876 4.0837 11 7 4.5766 4.4786 4.3997 12 6 5.4984 5.1552 3.6461 13 1 5.2496 6.1180 3.2249 14 6 6.7546 4.6061 3.4286 15 7 6.9271 3.3039 3.5118 16 14 8.2003 5.7153 3.0175 17 1 7.7461 7.1288 2.9847 18 1 9.2543 5.5585 4.0518 19 1 8.7499 5.3405 1.6899 20 6 5.0167 3.6459 5.5216 21 6 4.9336 4.4527 6.8190 22 6 5.3870 3.5962 7.9731 23 8 5.7408 2.4575 7.7779 24 8 5.3987 4.0987 9.2177 25 6 5.8468 3.2167 10.2806 26 16 2.8094 3.6431 1.3481 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0283 33 1 2.0956 3.1410 -1.1383 34 1 3.8890 2.3449 -2.6545 35 1 4.3883 2.2154 -0.9508 36 1 3.8744 0.7622 -1.8408 37 1 2.2195 1.9500 4.4351 38 1 2.5660 4.4726 4.9966 39 1 2.9490 5.5645 3.6442 40 1 7.8048 2.9202 3.3594 41 1 4.3740 2.7689 5.5974 42 1 6.0464 3.3284 5.3565 43 1 5.5765 5.3297 6.7433 44 1 3.9040 4.7700 6.9841 45 1 6.8710 2.9005 10.0827 46 1 5.8078 3.7460 11.2326 47 1 5.1985 2.3416 10.3241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877708982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:42 Heat of formation + Delta-G solvation = -31.884523 kcal Electronic energy + Delta-G solvation = -27930.728271 eV Core-core repulsion = 24047.877262 eV Total energy + Delta-G solvation = -3882.851010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39890 -40.46419 -38.47331 -37.78380 -37.19560 -33.75044 -33.05138 -32.86366 -31.16154 -29.72593 -28.57392 -26.95646 -26.03800 -25.09123 -24.49529 -22.86205 -22.43684 -21.41312 -20.08047 -18.90137 -18.86557 -18.21252 -17.56961 -17.42055 -17.07702 -16.68744 -16.57164 -15.82180 -15.53910 -15.34686 -15.18823 -14.83345 -14.73258 -14.57920 -14.39429 -14.11320 -13.79031 -13.59781 -13.39957 -13.22244 -13.16647 -12.95578 -12.84267 -12.79844 -12.63403 -12.51858 -12.22775 -12.06670 -11.98336 -11.88975 -11.79063 -11.61060 -11.57473 -11.44510 -10.70605 -10.54679 -10.31867 -9.81067 -8.70452 -8.29946 -7.84210 -5.38587 0.30270 0.51831 1.17948 1.25796 1.45084 1.50315 1.59046 1.84367 2.04490 2.25145 2.53786 3.28051 3.72658 3.77712 4.07418 4.09958 4.14874 4.20547 4.31506 4.34272 4.39424 4.43413 4.45130 4.47546 4.56190 4.58643 4.64585 4.71589 4.76165 4.80538 4.84374 4.94523 4.97334 5.04518 5.19166 5.21073 5.27695 5.34839 5.42951 5.46024 5.69806 5.84168 6.01469 6.23262 6.42758 6.82137 7.12780 7.20016 7.81689 8.33769 9.13889 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.003575 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.821061 B = 7831.365535 C = 9499.119505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 N -0.587 5.587 4 C 0.120 3.880 5 C -0.171 4.171 6 C 0.289 3.711 7 N -0.572 5.572 8 C 0.042 3.958 9 C -0.245 4.245 10 C 0.215 3.785 11 N -0.577 5.577 12 C -0.257 4.257 13 H 0.070 0.930 14 C -0.032 4.032 15 N -0.909 5.909 16 Si 0.947 3.053 17 H -0.258 1.258 18 H -0.295 1.295 19 H -0.297 1.297 20 C 0.167 3.833 21 C -0.119 4.119 22 C 0.466 3.534 23 O -0.544 6.544 24 O -0.365 6.365 25 C 0.027 3.973 26 S 0.097 5.903 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.062 0.938 37 H 0.162 0.838 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.246 0.754 41 H 0.018 0.982 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.053 0.947 46 H 0.136 0.864 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 -0.179 -2.729 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.004 3.996 3 N -0.308 5.308 4 C -0.002 4.002 5 C -0.230 4.230 6 C -0.080 4.080 7 N -0.297 5.297 8 C -0.107 4.107 9 C -0.371 4.371 10 C 0.087 3.913 11 N -0.295 5.295 12 C -0.387 4.387 13 H 0.088 0.912 14 C -0.230 4.230 15 N -0.552 5.552 16 Si 0.775 3.225 17 H -0.182 1.182 18 H -0.222 1.222 19 H -0.224 1.224 20 C 0.040 3.960 21 C -0.159 4.159 22 C 0.311 3.689 23 O -0.434 6.434 24 O -0.281 6.281 25 C -0.067 4.067 26 S 0.346 5.654 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.179 0.821 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.137 0.863 45 H 0.072 0.928 46 H 0.154 0.846 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.635 -0.420 -3.588 11.231 hybrid contribution 1.341 -0.604 0.951 1.752 sum -9.293 -1.024 -2.637 9.714 Atomic orbital electron populations 1.22052 0.95096 1.02658 1.01495 1.21449 0.94893 0.80593 1.02708 1.46243 1.70441 1.13932 1.00224 1.21713 0.97596 0.97130 0.83767 1.22221 0.96324 1.02654 1.01759 1.23771 0.98696 0.95008 0.90567 1.66274 1.29217 1.37040 0.97196 1.21132 1.02157 0.89757 0.97641 1.26819 1.10798 1.03556 0.95945 1.19640 0.85111 0.93020 0.93566 1.44210 1.01258 1.54377 1.29669 1.19320 0.93229 0.98397 1.27796 0.91213 1.25757 1.01937 0.95542 0.99780 1.70221 1.22170 1.10903 1.51920 0.85534 0.80242 0.80095 0.76597 1.18161 1.22160 1.22436 1.20435 1.01479 0.90277 0.83843 1.22069 1.04427 0.99457 0.89942 1.24360 0.73426 0.86748 0.84394 1.90648 1.45725 1.21512 1.85472 1.86529 1.78333 1.46150 1.17137 1.23517 0.99677 0.94786 0.88675 1.83553 1.65683 1.10830 1.05298 0.90145 0.94846 0.91433 0.88353 0.92710 0.86375 0.91167 0.88984 0.95473 0.91897 0.82105 0.89845 0.91727 0.94428 0.96309 0.91525 0.87742 0.86307 0.92783 0.84589 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.24 71.98 0.74 -2.38 16 2 C 0.13 3.08 6.25 86.38 0.54 3.62 16 3 N -0.59 -16.83 2.58 -710.83 -1.83 -18.66 16 4 C 0.12 2.59 6.10 86.38 0.53 3.12 16 5 C -0.17 -3.86 10.24 71.98 0.74 -3.12 16 6 C 0.29 10.75 7.74 179.32 1.39 12.14 16 7 N -0.57 -23.56 9.82 -202.02 -1.98 -25.55 16 8 C 0.04 1.76 11.24 83.54 0.94 2.70 16 9 C -0.25 -10.09 6.16 24.57 0.15 -9.93 16 10 C 0.21 8.39 6.21 85.63 0.53 8.92 16 11 N -0.58 -26.72 2.44 -706.35 -1.72 -28.44 16 12 C -0.26 -13.09 9.48 84.03 0.80 -12.29 16 13 H 0.07 3.48 7.93 -2.91 -0.02 3.45 16 14 C -0.03 -1.72 4.88 84.86 0.41 -1.31 16 15 N -0.91 -53.63 11.41 21.65 0.25 -53.38 16 16 Si 0.95 43.53 29.62 68.60 2.03 45.56 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 20 C 0.17 7.77 4.54 86.38 0.39 8.17 16 21 C -0.12 -4.37 6.13 29.85 0.18 -4.19 16 22 C 0.47 17.38 7.96 71.24 0.57 17.94 16 23 O -0.54 -24.22 15.73 21.96 0.35 -23.88 16 24 O -0.36 -11.15 10.57 -51.38 -0.54 -11.70 16 25 C 0.03 0.61 10.56 113.37 1.20 1.81 16 26 S 0.10 3.69 21.68 -56.49 -1.22 2.46 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.10 1.77 8.07 -2.39 -0.02 1.75 16 31 H 0.05 1.63 7.62 -2.39 -0.02 1.61 16 32 H 0.12 1.68 8.07 -2.39 -0.02 1.66 16 33 H 0.07 1.58 7.04 -2.39 -0.02 1.56 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.16 6.32 8.06 -2.91 -0.02 6.29 16 38 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 39 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 42 H 0.07 3.75 5.32 -2.38 -0.01 3.74 16 43 H 0.10 3.82 8.14 -2.38 -0.02 3.80 16 44 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 45 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 46 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 Total: -1.00 -71.73 407.02 5.36 -66.36 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.95 Total: 22.02 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 9.10 Total: 25.19 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -5.29 Total: -126.03 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.20 Total: -35.57 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.22 Total: 2.46 kcal Total: -71.73 5.36 -66.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877708982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.478 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds