Wall clock time and date at job start Wed Apr 1 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40369 * 126.12442 * 2 1 4 4 C 1.31218 * 108.26568 * 180.52232 * 3 2 1 5 5 C 1.38988 * 107.83565 * 359.96820 * 4 3 2 6 6 C 1.34379 * 126.12310 * 180.02562 * 2 1 3 7 7 C 1.51376 * 127.72330 * 358.34136 * 6 2 1 8 8 C 1.53594 * 107.56139 * 246.26310 * 7 6 2 9 9 C 1.51579 * 110.75557 * 278.33244 * 8 7 6 10 10 N 1.45170 * 114.65673 * 67.42514 * 9 8 7 11 11 C 1.34777 * 119.56199 * 111.63199 * 10 9 8 12 12 O 1.21576 * 119.99671 * 355.13387 * 11 10 9 13 13 N 1.34770 * 120.00313 * 175.14025 * 11 10 9 14 14 C 1.39243 * 120.00402 * 185.41032 * 13 11 10 15 15 C 1.39681 * 119.57906 * 185.33434 * 14 13 11 16 16 C 1.38646 * 119.49973 * 179.97438 * 15 14 13 17 17 C 1.38360 * 118.66977 * 0.02562 * 16 15 14 18 18 C 1.40573 * 119.12948 * 359.97438 * 17 16 15 19 19 C 1.41330 * 119.79005 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99548 * 359.97438 * 19 18 17 21 21 C 1.40026 * 120.00277 * 180.02562 * 19 18 17 22 22 N 1.30741 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47249 * 59.99374 * 23 21 19 25 25 H 1.48503 * 109.47140 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47182 * 299.99593 * 23 21 19 27 27 N 1.31910 * 119.57154 * 5.05963 * 14 13 11 28 28 C 1.47305 * 120.88192 * 291.60979 * 10 9 8 29 29 H 1.08996 * 109.47633 * 269.97779 * 1 2 3 30 30 H 1.09007 * 109.46774 * 29.97583 * 1 2 3 31 31 H 1.09003 * 109.47100 * 149.97021 * 1 2 3 32 32 H 1.08002 * 126.07828 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.83832 * 5.77804 * 7 6 2 34 34 H 1.09000 * 109.83897 * 126.74618 * 7 6 2 35 35 H 1.09000 * 109.22135 * 38.66299 * 8 7 6 36 36 H 1.09002 * 109.22100 * 158.00194 * 8 7 6 37 37 H 1.09003 * 108.44846 * 188.76415 * 9 8 7 38 38 H 1.08996 * 108.44574 * 306.24532 * 9 8 7 39 39 H 0.97006 * 119.99868 * 5.41129 * 13 11 10 40 40 H 1.08005 * 120.25376 * 359.95892 * 15 14 13 41 41 H 1.07996 * 120.66675 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.43548 * 179.97438 * 17 16 15 43 43 H 0.97003 * 120.00065 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.96223 * 318.47654 * 28 10 9 45 45 H 1.08996 * 109.96878 * 197.17296 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2925 1.1338 0.0000 4 6 3.5414 0.7314 -0.0114 5 6 3.5409 -0.6584 -0.0181 6 6 2.2572 -1.0854 -0.0005 7 6 1.8364 -2.5392 0.0335 8 6 2.3050 -3.1260 1.3733 9 6 3.7683 -3.5159 1.3066 10 7 4.6872 -2.3996 1.1773 11 6 5.5097 -2.0934 2.2002 12 8 5.4183 -2.6928 3.2539 13 7 6.4334 -1.1229 2.0549 14 6 7.3564 -0.8827 3.0694 15 6 8.2369 0.1961 2.9592 16 6 9.1550 0.4341 3.9706 17 6 9.1705 -0.4116 5.0655 18 6 8.2586 -1.4801 5.1178 19 6 8.2618 -2.3522 6.2299 20 1 8.9637 -2.1968 7.0359 21 6 7.3558 -3.4184 6.2864 22 7 6.5064 -3.6068 5.3105 23 14 7.3596 -4.5705 7.7567 24 1 7.0804 -3.7965 8.9929 25 1 6.3125 -5.6078 7.5755 26 1 8.6887 -5.2230 7.8708 27 7 7.3845 -1.6736 4.1247 28 6 4.7332 -1.5972 -0.0572 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 4.4145 1.3672 -0.0140 33 1 0.7516 -2.6122 -0.0432 34 1 2.3035 -3.0788 -0.7903 35 1 2.1672 -2.3827 2.1585 36 1 1.7089 -4.0082 1.6068 37 1 4.0202 -4.0668 2.2129 38 1 3.9103 -4.1774 0.4520 39 1 6.4552 -0.5915 1.2436 40 1 8.2030 0.8399 2.0927 41 1 9.8442 1.2629 3.9050 42 1 9.8739 -0.2529 5.8695 43 1 5.8785 -4.3451 5.3497 44 1 4.6649 -2.2495 -0.9278 45 1 5.6584 -1.0223 -0.0933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:19 Heat of formation + Delta-G solvation = 128.897001 kcal Electronic energy + Delta-G solvation = -30250.865179 eV Core-core repulsion = 26271.834979 eV Total energy + Delta-G solvation = -3979.030200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57204 -39.60547 -37.88435 -36.05066 -34.34535 -33.93422 -32.97633 -32.40813 -30.85841 -30.21095 -28.88569 -27.47660 -26.06994 -25.31112 -24.93866 -22.74136 -21.48358 -20.91881 -20.83161 -19.42106 -18.75986 -18.00297 -16.97389 -16.87320 -16.13878 -15.59598 -15.10044 -14.89215 -14.62206 -14.45309 -14.36405 -14.26990 -13.62533 -13.52520 -13.36426 -13.24590 -12.86563 -12.72648 -12.65235 -12.57638 -12.03196 -11.85813 -11.71149 -11.59388 -11.27517 -11.07871 -10.95342 -10.89912 -10.59364 -10.54134 -10.37851 -9.87612 -9.61099 -9.31799 -9.04726 -8.93649 -8.41095 -8.06415 -7.87207 -7.15122 -6.84820 -6.04768 -4.32223 1.79429 2.40857 2.68924 2.91620 3.19976 3.20173 3.22591 3.33801 3.35445 4.12075 4.24189 4.38007 4.39473 4.48283 4.73523 4.86436 4.93142 5.00971 5.01630 5.06117 5.15281 5.28263 5.37359 5.50089 5.56123 5.63345 5.77858 5.83491 6.09999 6.13221 6.14775 6.19490 6.26941 6.54550 6.59633 6.65907 6.87370 6.92382 6.93915 7.11709 7.28896 7.43711 7.65485 7.69205 7.79957 7.88892 8.23531 8.35112 8.69817 8.86622 9.13489 9.65878 10.34972 10.56494 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003652 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.568586 B = 7666.105579 C = 8984.239338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.371 5.371 3 N -0.305 5.305 4 C 0.065 3.935 5 C -0.259 4.259 6 C 0.099 3.901 7 C -0.055 4.055 8 C -0.129 4.129 9 C 0.133 3.867 10 N -0.631 5.631 11 C 0.671 3.329 12 O -0.464 6.464 13 N -0.671 5.671 14 C 0.388 3.612 15 C -0.357 4.357 16 C -0.036 4.036 17 C -0.308 4.308 18 C 0.273 3.727 19 C -0.427 4.427 20 H 0.081 0.919 21 C 0.058 3.942 22 N -0.651 5.651 23 Si 0.894 3.106 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.268 1.268 27 N -0.472 5.472 28 C 0.193 3.807 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.183 0.817 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.078 0.922 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 0.361 -14.322 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.152 5.152 3 N -0.126 5.126 4 C -0.120 4.120 5 C -0.272 4.272 6 C -0.030 4.030 7 C -0.094 4.094 8 C -0.168 4.168 9 C 0.008 3.992 10 N -0.371 5.371 11 C 0.371 3.629 12 O -0.329 6.329 13 N -0.322 5.322 14 C 0.148 3.852 15 C -0.383 4.383 16 C -0.060 4.060 17 C -0.331 4.331 18 C 0.148 3.852 19 C -0.458 4.458 20 H 0.099 0.901 21 C -0.171 4.171 22 N -0.269 5.269 23 Si 0.719 3.281 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.192 1.192 27 N -0.190 5.190 28 C 0.068 3.932 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.200 0.800 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.809 0.005 -13.477 19.296 hybrid contribution 0.948 0.143 0.044 0.959 sum -12.861 0.147 -13.433 18.598 Atomic orbital electron populations 1.21804 0.74771 1.04145 1.03341 1.48272 1.06304 1.03675 1.56963 1.77589 1.01535 1.07279 1.26193 1.23542 0.95295 0.94278 0.98870 1.20395 0.94846 0.94148 1.17802 1.21011 0.90975 0.90680 1.00355 1.20631 1.00940 0.88042 0.99777 1.21759 0.97578 1.01488 0.95995 1.20484 0.87447 0.87693 1.03531 1.47155 1.40395 1.34449 1.15146 1.16338 0.80176 0.82029 0.84327 1.91333 1.68373 1.50300 1.22844 1.42735 1.32578 1.37009 1.19830 1.18360 0.87119 0.90913 0.88805 1.20435 1.08342 1.05447 1.04124 1.20536 0.95598 0.96551 0.93304 1.21614 1.07576 1.02921 1.00995 1.18371 0.86446 0.89687 0.90745 1.19524 1.15155 1.08156 1.02946 0.90119 1.26164 0.95565 0.98487 0.96905 1.70336 1.08828 1.21761 1.25991 0.86616 0.78629 0.80243 0.82633 1.19274 1.20479 1.19242 1.68678 1.23818 1.26336 1.00218 1.20012 0.94247 0.91265 0.87675 0.90861 0.89360 0.89682 0.80018 0.90949 0.89137 0.91332 0.90169 0.88579 0.92602 0.77048 0.89202 0.88693 0.88675 0.91707 0.90357 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.77 11.21 59.85 0.67 1.44 16 2 N -0.37 -4.49 4.01 -63.78 -0.26 -4.75 16 3 N -0.30 -4.37 12.60 30.51 0.38 -3.99 16 4 C 0.07 0.86 12.01 -17.54 -0.21 0.65 16 5 C -0.26 -3.30 5.64 -104.85 -0.59 -3.89 16 6 C 0.10 1.17 6.05 -82.19 -0.50 0.68 16 7 C -0.05 -0.48 5.77 -27.24 -0.16 -0.64 16 8 C -0.13 -1.41 5.80 -27.14 -0.16 -1.57 16 9 C 0.13 1.78 5.63 -5.47 -0.03 1.75 16 10 N -0.63 -9.78 2.67 -181.42 -0.48 -10.27 16 11 C 0.67 14.15 8.20 -86.92 -0.71 13.44 16 12 O -0.46 -12.00 11.52 5.30 0.06 -11.93 16 13 N -0.67 -13.80 5.27 -15.79 -0.08 -13.88 16 14 C 0.39 9.71 7.42 -154.99 -1.15 8.56 16 15 C -0.36 -8.21 9.95 -38.89 -0.39 -8.59 16 16 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 17 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16 18 C 0.27 7.83 6.55 -85.00 -0.56 7.27 16 19 C -0.43 -11.99 9.14 -37.74 -0.34 -12.34 16 20 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 21 C 0.06 1.56 5.50 -17.35 -0.10 1.46 16 22 N -0.65 -18.31 9.08 55.55 0.50 -17.80 16 23 Si 0.89 19.56 29.56 -169.99 -5.02 14.54 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 N -0.47 -13.55 5.74 -10.26 -0.06 -13.61 16 28 C 0.19 2.31 6.10 -4.21 -0.03 2.28 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.08 0.42 7.19 -51.93 -0.37 0.05 16 32 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.07 0.48 6.98 -51.93 -0.36 0.12 16 34 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.58 6.85 -51.93 -0.36 1.22 16 38 H 0.06 0.60 8.02 -51.93 -0.42 0.19 16 39 H 0.39 6.43 6.15 -40.82 -0.25 6.18 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 43 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.91 5.71 -51.93 -0.30 0.62 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -36.48 364.38 -10.30 -46.78 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.80 Total: 8.46 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -5.03 Total: 0.96 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: 0.01 Total: -64.30 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.06 Total: -11.93 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.48 -10.30 -46.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.676 kcal (2) G-P(sol) polarization free energy of solvation -36.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds