Wall clock time and date at job start Wed Apr 1 2020 01:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40369 * 126.12442 * 2 1 4 4 C 1.31218 * 108.26568 * 180.52232 * 3 2 1 5 5 C 1.38988 * 107.83565 * 359.96820 * 4 3 2 6 6 C 1.34379 * 126.12310 * 180.02562 * 2 1 3 7 7 C 1.51376 * 127.72330 * 358.34136 * 6 2 1 8 8 C 1.53594 * 107.56139 * 246.26310 * 7 6 2 9 9 C 1.51579 * 110.75557 * 278.33244 * 8 7 6 10 10 N 1.45170 * 114.65673 * 67.42514 * 9 8 7 11 11 C 1.34777 * 119.56199 * 111.63199 * 10 9 8 12 12 O 1.21576 * 119.99671 * 355.13387 * 11 10 9 13 13 N 1.34770 * 120.00313 * 175.14025 * 11 10 9 14 14 C 1.39243 * 120.00402 * 185.41032 * 13 11 10 15 15 C 1.39681 * 119.57906 * 185.33434 * 14 13 11 16 16 C 1.38646 * 119.49973 * 179.97438 * 15 14 13 17 17 C 1.38360 * 118.66977 * 0.02562 * 16 15 14 18 18 C 1.40573 * 119.12948 * 359.97438 * 17 16 15 19 19 C 1.41330 * 119.79005 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99548 * 359.97438 * 19 18 17 21 21 C 1.40026 * 120.00277 * 180.02562 * 19 18 17 22 22 N 1.30741 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47249 * 59.99374 * 23 21 19 25 25 H 1.48503 * 109.47140 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47182 * 299.99593 * 23 21 19 27 27 N 1.31910 * 119.57154 * 5.05963 * 14 13 11 28 28 C 1.47305 * 120.88192 * 291.60979 * 10 9 8 29 29 H 1.08996 * 109.47633 * 269.97779 * 1 2 3 30 30 H 1.09007 * 109.46774 * 29.97583 * 1 2 3 31 31 H 1.09003 * 109.47100 * 149.97021 * 1 2 3 32 32 H 1.08002 * 126.07828 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.83832 * 5.77804 * 7 6 2 34 34 H 1.09000 * 109.83897 * 126.74618 * 7 6 2 35 35 H 1.09000 * 109.22135 * 38.66299 * 8 7 6 36 36 H 1.09002 * 109.22100 * 158.00194 * 8 7 6 37 37 H 1.09003 * 108.44846 * 188.76415 * 9 8 7 38 38 H 1.08996 * 108.44574 * 306.24532 * 9 8 7 39 39 H 0.97006 * 119.99868 * 5.41129 * 13 11 10 40 40 H 1.08005 * 120.25376 * 359.95892 * 15 14 13 41 41 H 1.07996 * 120.66675 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.43548 * 179.97438 * 17 16 15 43 43 H 0.97003 * 120.00065 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.96223 * 318.47654 * 28 10 9 45 45 H 1.08996 * 109.96878 * 197.17296 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2925 1.1338 0.0000 4 6 3.5414 0.7314 -0.0114 5 6 3.5409 -0.6584 -0.0181 6 6 2.2572 -1.0854 -0.0005 7 6 1.8364 -2.5392 0.0335 8 6 2.3050 -3.1260 1.3733 9 6 3.7683 -3.5159 1.3066 10 7 4.6872 -2.3996 1.1773 11 6 5.5097 -2.0934 2.2002 12 8 5.4183 -2.6928 3.2539 13 7 6.4334 -1.1229 2.0549 14 6 7.3564 -0.8827 3.0694 15 6 8.2369 0.1961 2.9592 16 6 9.1550 0.4341 3.9706 17 6 9.1705 -0.4116 5.0655 18 6 8.2586 -1.4801 5.1178 19 6 8.2618 -2.3522 6.2299 20 1 8.9637 -2.1968 7.0359 21 6 7.3558 -3.4184 6.2864 22 7 6.5064 -3.6068 5.3105 23 14 7.3596 -4.5705 7.7567 24 1 7.0804 -3.7965 8.9929 25 1 6.3125 -5.6078 7.5755 26 1 8.6887 -5.2230 7.8708 27 7 7.3845 -1.6736 4.1247 28 6 4.7332 -1.5972 -0.0572 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 4.4145 1.3672 -0.0140 33 1 0.7516 -2.6122 -0.0432 34 1 2.3035 -3.0788 -0.7903 35 1 2.1672 -2.3827 2.1585 36 1 1.7089 -4.0082 1.6068 37 1 4.0202 -4.0668 2.2129 38 1 3.9103 -4.1774 0.4520 39 1 6.4552 -0.5915 1.2436 40 1 8.2030 0.8399 2.0927 41 1 9.8442 1.2629 3.9050 42 1 9.8739 -0.2529 5.8695 43 1 5.8785 -4.3451 5.3497 44 1 4.6649 -2.2495 -0.9278 45 1 5.6584 -1.0223 -0.0933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881144410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:18 Heat of formation + Delta-G solvation = 105.822103 kcal Electronic energy + Delta-G solvation = -30251.865781 eV Core-core repulsion = 26271.834979 eV Total energy + Delta-G solvation = -3980.030803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.50354 -41.15179 -39.63261 -37.34464 -35.93293 -35.22140 -34.66823 -33.44356 -32.16051 -31.88278 -30.72515 -28.31735 -27.56412 -26.78553 -25.91323 -24.15903 -23.26032 -22.43579 -21.85864 -20.53037 -20.12291 -19.63587 -18.53431 -18.00617 -17.68304 -16.60561 -16.42713 -16.24524 -16.17085 -16.02399 -15.71166 -15.35453 -15.28421 -14.68294 -14.63135 -14.39913 -14.31532 -13.90902 -13.73932 -13.66467 -13.44013 -13.28001 -12.85880 -12.78252 -12.70639 -12.53944 -12.47757 -12.27100 -12.15744 -11.89631 -11.75375 -11.52482 -11.42564 -10.84662 -10.72881 -10.20181 -9.85509 -9.52869 -9.20456 -9.06854 -8.71322 -7.99122 -6.38087 0.89606 1.00685 1.31953 1.40256 1.51944 1.55680 1.62412 1.65538 2.04598 2.28899 2.61628 3.07361 3.14306 3.59757 3.66901 3.98621 4.00219 4.09830 4.12007 4.29086 4.34226 4.37860 4.41493 4.51294 4.55184 4.63542 4.65265 4.76888 4.85245 4.86411 4.92159 4.95913 4.99526 5.09973 5.12183 5.27088 5.31653 5.32885 5.65790 5.70215 5.85265 5.91920 5.97967 6.08887 6.16154 6.29192 6.44637 6.72906 6.85681 7.09651 7.19855 8.05588 8.42503 8.61932 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003652 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.568586 B = 7666.105579 C = 8984.239338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.375 5.375 3 N -0.343 5.343 4 C 0.052 3.948 5 C -0.279 4.279 6 C 0.098 3.902 7 C -0.046 4.046 8 C -0.117 4.117 9 C 0.127 3.873 10 N -0.620 5.620 11 C 0.662 3.338 12 O -0.519 6.519 13 N -0.661 5.661 14 C 0.366 3.634 15 C -0.347 4.347 16 C -0.033 4.033 17 C -0.333 4.333 18 C 0.238 3.762 19 C -0.469 4.469 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.685 5.685 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.259 1.259 27 N -0.507 5.507 28 C 0.194 3.806 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.196 0.804 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.028 0.972 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.413 0.587 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.103 0.897 43 H 0.269 0.731 44 H 0.112 0.888 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.004 0.115 -16.480 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.156 5.156 3 N -0.165 5.165 4 C -0.133 4.133 5 C -0.292 4.292 6 C -0.033 4.033 7 C -0.085 4.085 8 C -0.157 4.157 9 C 0.003 3.997 10 N -0.360 5.360 11 C 0.362 3.638 12 O -0.388 6.388 13 N -0.313 5.313 14 C 0.126 3.874 15 C -0.372 4.372 16 C -0.057 4.057 17 C -0.356 4.356 18 C 0.113 3.887 19 C -0.500 4.500 20 H 0.102 0.898 21 C -0.215 4.215 22 N -0.304 5.304 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.183 1.183 27 N -0.226 5.226 28 C 0.071 3.929 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.136 0.864 32 H 0.212 0.788 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.047 0.953 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.252 0.748 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.121 0.879 43 H 0.079 0.921 44 H 0.130 0.870 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.848 -0.199 -15.726 21.629 hybrid contribution 1.210 0.357 0.551 1.377 sum -13.638 0.158 -15.175 20.403 Atomic orbital electron populations 1.22161 0.72572 1.06160 1.04093 1.48626 1.07665 1.03195 1.56092 1.77511 1.02310 1.09017 1.27624 1.23887 0.95611 0.95051 0.98707 1.20526 0.95574 0.94024 1.19048 1.21541 0.90859 0.91990 0.98894 1.20736 1.03078 0.85845 0.98828 1.21648 0.96151 1.01565 0.96320 1.20704 0.88528 0.87273 1.03166 1.47145 1.39270 1.34744 1.14841 1.16672 0.80651 0.81606 0.84892 1.91314 1.69986 1.52003 1.25458 1.42606 1.31747 1.37321 1.19646 1.18870 0.88273 0.91248 0.88990 1.20913 1.06677 1.04609 1.05050 1.21010 0.95830 0.96802 0.92085 1.21800 1.07860 1.03300 1.02633 1.18871 0.87477 0.90983 0.91417 1.19862 1.16677 1.09758 1.03693 0.89757 1.27024 0.94712 0.99761 0.99987 1.70550 1.09501 1.22280 1.28094 0.85412 0.78937 0.77774 0.78417 1.18795 1.19780 1.18324 1.68647 1.24539 1.28057 1.01357 1.20263 0.94463 0.91448 0.86761 0.90692 0.88752 0.86381 0.78751 0.87907 0.86622 0.95253 0.87516 0.92519 0.88982 0.74766 0.85142 0.84528 0.87858 0.92051 0.87037 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 11.21 127.77 1.43 2.60 16 2 N -0.37 -8.43 4.01 -355.70 -1.43 -9.85 16 3 N -0.34 -9.60 12.60 -57.40 -0.72 -10.33 16 4 C 0.05 1.32 12.01 84.96 1.02 2.34 16 5 C -0.28 -6.63 5.64 -20.01 -0.11 -6.74 16 6 C 0.10 2.08 6.05 41.70 0.25 2.34 16 7 C -0.05 -0.64 5.77 30.26 0.17 -0.46 16 8 C -0.12 -2.37 5.80 30.33 0.18 -2.19 16 9 C 0.13 3.29 5.63 86.16 0.48 3.78 16 10 N -0.62 -18.87 2.67 -846.16 -2.26 -21.13 16 11 C 0.66 28.58 8.20 179.06 1.47 30.05 16 12 O -0.52 -28.30 11.52 -3.95 -0.05 -28.34 16 13 N -0.66 -27.25 5.27 -322.13 -1.70 -28.95 16 14 C 0.37 18.53 7.42 133.26 0.99 19.52 16 15 C -0.35 -15.39 9.95 22.72 0.23 -15.17 16 16 C -0.03 -1.49 10.15 22.40 0.23 -1.26 16 17 C -0.33 -17.42 9.83 22.87 0.22 -17.20 16 18 C 0.24 14.24 6.55 40.19 0.26 14.50 16 19 C -0.47 -27.59 9.14 23.46 0.21 -27.37 16 20 H 0.08 4.64 7.85 -2.91 -0.02 4.61 16 21 C 0.01 0.61 5.50 85.29 0.47 1.08 16 22 N -0.69 -40.65 9.08 21.84 0.20 -40.45 16 23 Si 0.97 41.78 29.56 68.60 2.03 43.80 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 27 N -0.51 -30.25 5.74 -186.36 -1.07 -31.32 16 28 C 0.19 4.21 6.10 85.83 0.52 4.74 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.12 0.72 7.19 -2.39 -0.02 0.70 16 32 H 0.20 4.06 8.06 -2.91 -0.02 4.03 16 33 H 0.10 0.85 6.98 -2.39 -0.02 0.83 16 34 H 0.12 1.11 7.92 -2.39 -0.02 1.09 16 35 H 0.03 0.82 7.89 -2.39 -0.02 0.80 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.95 6.85 -2.39 -0.02 1.93 16 38 H 0.09 1.72 8.02 -2.39 -0.02 1.70 16 39 H 0.41 13.02 6.15 -92.70 -0.57 12.45 16 40 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 42 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 43 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16 44 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 45 H 0.09 1.77 5.71 -2.39 -0.01 1.76 16 Total: -1.00 -86.23 364.38 3.50 -82.72 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.47 Total: 33.30 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 8.03 Total: 10.55 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -6.98 Total: -142.03 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -86.23 3.50 -82.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.546 kcal (2) G-P(sol) polarization free energy of solvation -86.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds