Wall clock time and date at job start Wed Apr 1 2020 01:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40302 * 126.09356 * 2 1 4 4 C 1.31063 * 108.27089 * 180.09858 * 3 2 1 5 5 C 1.39295 * 108.08064 * 359.97438 * 4 3 2 6 6 C 1.34327 * 126.09359 * 180.02562 * 2 1 3 7 7 C 1.50827 * 128.03151 * 359.86806 * 6 2 1 8 8 C 1.53369 * 108.37924 * 196.58138 * 7 6 2 9 9 C 1.53102 * 109.51019 * 310.05215 * 8 7 6 10 10 C 1.50848 * 127.90012 * 179.90436 * 5 4 3 11 11 H 1.08998 * 109.71236 * 76.89312 * 10 5 4 12 12 N 1.46499 * 109.68127 * 316.34947 * 10 5 4 13 13 C 1.34775 * 119.99934 * 86.07804 * 12 10 5 14 14 O 1.21582 * 119.99786 * 0.02562 * 13 12 10 15 15 N 1.34769 * 119.99995 * 179.97438 * 13 12 10 16 16 C 1.39254 * 120.00078 * 185.14829 * 15 13 12 17 17 C 1.39682 * 119.57580 * 174.62290 * 16 15 13 18 18 C 1.38642 * 119.49670 * 179.97438 * 17 16 15 19 19 C 1.38356 * 118.66969 * 0.02562 * 18 17 16 20 20 C 1.40570 * 119.13157 * 0.02562 * 19 18 17 21 21 C 1.41331 * 119.78973 * 180.02562 * 20 19 18 22 22 H 1.08007 * 119.99565 * 359.97438 * 21 20 19 23 23 C 1.40027 * 120.00384 * 180.02562 * 21 20 19 24 24 N 1.30743 * 119.99841 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00089 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47117 * 59.99387 * 25 23 21 27 27 H 1.48499 * 109.46802 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46867 * 299.99530 * 25 23 21 29 29 N 1.31900 * 119.57200 * 354.35856 * 16 15 13 30 30 H 1.08995 * 109.47745 * 269.96039 * 1 2 3 31 31 H 1.09006 * 109.47234 * 29.96458 * 1 2 3 32 32 H 1.09004 * 109.47258 * 149.95659 * 1 2 3 33 33 H 1.08000 * 125.95924 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.68417 * 76.85915 * 7 6 2 35 35 H 1.09005 * 109.71324 * 316.31517 * 7 6 2 36 36 H 1.08998 * 109.46054 * 190.04166 * 8 7 6 37 37 H 1.09002 * 109.46067 * 70.06203 * 8 7 6 38 38 H 1.09000 * 109.46541 * 310.25977 * 9 8 7 39 39 H 1.09003 * 109.46361 * 190.27699 * 9 8 7 40 40 H 0.96996 * 119.99533 * 266.08224 * 12 10 5 41 41 H 0.97003 * 120.00376 * 5.15637 * 15 13 12 42 42 H 1.08003 * 120.24933 * 0.02562 * 17 16 15 43 43 H 1.08000 * 120.66881 * 179.97438 * 18 17 16 44 44 H 1.07999 * 120.43096 * 180.02562 * 19 18 17 45 45 H 0.96994 * 119.99793 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5392 0.7326 -0.0021 5 6 3.5455 -0.6604 -0.0030 6 6 2.2563 -1.0854 -0.0005 7 6 1.8437 -2.5362 0.0016 8 6 3.0539 -3.3825 0.4155 9 6 4.2698 -2.9809 -0.4238 10 6 4.7399 -1.5816 -0.0073 11 1 5.1764 -1.6225 0.9906 12 7 5.7371 -1.0921 -0.9624 13 6 6.6417 -0.1696 -0.5787 14 8 6.6304 0.2559 0.5602 15 7 7.5594 0.2804 -1.4571 16 6 8.5598 1.1517 -1.0339 17 6 9.5713 1.5237 -1.9224 18 6 10.5662 2.3918 -1.4995 19 6 10.5256 2.8654 -0.2002 20 6 9.4819 2.4530 0.6463 21 6 9.4266 2.9287 1.9759 22 1 10.1850 3.6066 2.3389 23 6 8.3891 2.5203 2.8231 24 7 7.4713 1.6992 2.3839 25 14 8.3157 3.1496 4.5804 26 1 8.2098 4.6308 4.5717 27 1 7.1299 2.5730 5.2635 28 1 9.5487 2.7457 5.3027 29 7 8.5370 1.6193 0.1993 30 1 -0.3634 -0.0007 1.0276 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3634 -0.8896 -0.5145 33 1 4.4105 1.3707 -0.0031 34 1 1.5170 -2.8264 -0.9969 35 1 1.0307 -2.6862 0.7120 36 1 2.8323 -4.4372 0.2524 37 1 3.2699 -3.2157 1.4708 38 1 3.9963 -2.9733 -1.4789 39 1 5.0752 -3.6975 -0.2625 40 1 5.7463 -1.4318 -1.8708 41 1 7.5230 -0.0026 -2.3843 42 1 9.5779 1.1387 -2.9315 43 1 11.3576 2.6916 -2.1705 44 1 11.2859 3.5432 0.1590 45 1 6.7525 1.4166 2.9706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881154722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:06 Heat of formation + Delta-G solvation = 112.055456 kcal Electronic energy + Delta-G solvation = -29990.182330 eV Core-core repulsion = 26010.421826 eV Total energy + Delta-G solvation = -3979.760504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41839 -39.33682 -37.77161 -36.57029 -34.23374 -33.71769 -32.90664 -32.69487 -30.20863 -29.60730 -29.26416 -28.13604 -26.54063 -25.41724 -23.42371 -22.01960 -21.79468 -21.11129 -20.53750 -19.64546 -18.72138 -17.89578 -17.11076 -16.70263 -16.11704 -15.72675 -14.97779 -14.68223 -14.44255 -14.39952 -14.21189 -14.03158 -13.82595 -13.51033 -13.34010 -13.01381 -12.94665 -12.81555 -12.68995 -12.49727 -12.01503 -11.86995 -11.79236 -11.31036 -11.09681 -11.01803 -10.89131 -10.75186 -10.57478 -10.37429 -10.34564 -9.86182 -9.59706 -9.06855 -9.00402 -8.93193 -8.41073 -8.07231 -7.85915 -7.11168 -6.84533 -6.01722 -4.29910 1.97438 2.61175 2.93723 2.99583 3.22109 3.23708 3.25099 3.35605 3.49433 4.14921 4.30388 4.42654 4.51426 4.68936 4.71245 4.96548 4.99220 5.03209 5.04990 5.20841 5.22165 5.31659 5.44245 5.52073 5.57341 5.71498 5.91055 5.97835 6.13058 6.15912 6.20281 6.27555 6.34769 6.56845 6.71424 6.89464 6.93738 6.97013 7.09652 7.19692 7.33893 7.47513 7.71263 7.84941 7.90405 7.94886 8.26717 8.39485 8.77733 8.90307 9.15640 9.72018 10.36627 10.58925 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.003767 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.227350 B = 7430.855877 C = 8658.912805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.377 5.377 3 N -0.309 5.309 4 C 0.088 3.912 5 C -0.239 4.239 6 C 0.076 3.924 7 C -0.052 4.052 8 C -0.108 4.108 9 C -0.124 4.124 10 C 0.248 3.752 11 H 0.095 0.905 12 N -0.751 5.751 13 C 0.663 3.337 14 O -0.459 6.459 15 N -0.674 5.674 16 C 0.388 3.612 17 C -0.360 4.360 18 C -0.036 4.036 19 C -0.309 4.309 20 C 0.272 3.728 21 C -0.426 4.426 22 H 0.080 0.920 23 C 0.058 3.942 24 N -0.645 5.645 25 Si 0.892 3.108 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.268 1.268 29 N -0.470 5.470 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.186 0.814 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.383 0.617 41 H 0.394 0.606 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.088 -12.282 -6.189 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.159 5.159 3 N -0.130 5.130 4 C -0.097 4.097 5 C -0.252 4.252 6 C -0.053 4.053 7 C -0.091 4.091 8 C -0.147 4.147 9 C -0.162 4.162 10 C 0.141 3.859 11 H 0.112 0.888 12 N -0.409 5.409 13 C 0.361 3.639 14 O -0.323 6.323 15 N -0.323 5.323 16 C 0.148 3.852 17 C -0.386 4.386 18 C -0.060 4.060 19 C -0.332 4.332 20 C 0.147 3.853 21 C -0.456 4.456 22 H 0.098 0.902 23 C -0.172 4.172 24 N -0.263 5.263 25 Si 0.716 3.284 26 H -0.193 1.193 27 H -0.205 1.205 28 H -0.193 1.193 29 N -0.188 5.188 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.203 0.797 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.215 0.785 41 H 0.226 0.774 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.947 -11.214 -4.372 19.979 hybrid contribution 1.062 -0.290 -0.863 1.398 sum -14.885 -11.503 -5.235 19.527 Atomic orbital electron populations 1.21730 0.75141 1.03948 1.02955 1.48206 1.06079 1.03770 1.57797 1.77605 1.01864 1.06870 1.26673 1.23777 0.94732 0.94912 0.96317 1.20365 0.93763 0.94485 1.16600 1.20835 0.91088 0.90376 1.02987 1.20306 0.98900 0.87712 1.02220 1.21485 0.93460 0.98853 1.00909 1.21860 0.97931 0.96237 1.00212 1.18886 0.84177 0.88951 0.93872 0.88750 1.45338 1.34616 1.46510 1.14475 1.16458 0.80070 0.80977 0.86345 1.91395 1.70103 1.55566 1.15257 1.42591 1.29513 1.48665 1.11488 1.18339 0.85750 0.89200 0.91876 1.20431 1.03087 1.15385 0.99673 1.20532 0.95682 0.94756 0.95067 1.21608 1.04676 1.11162 0.95742 1.18367 0.86326 0.87748 0.92873 1.19520 1.08280 1.23442 0.94374 0.90176 1.26155 0.96005 0.95396 0.99655 1.70316 1.05422 1.16628 1.33933 0.86652 0.78359 0.79966 0.83385 1.19278 1.20493 1.19286 1.68704 1.25928 1.14259 1.09937 0.91145 0.89543 0.90034 0.79706 0.90140 0.90568 0.90694 0.90901 0.91457 0.90757 0.78517 0.77366 0.89289 0.88774 0.88729 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 11.32 59.84 0.68 1.57 16 2 N -0.38 -5.16 4.00 -63.88 -0.26 -5.42 16 3 N -0.31 -5.51 12.59 30.54 0.38 -5.12 16 4 C 0.09 1.62 11.40 -17.49 -0.20 1.42 16 5 C -0.24 -3.68 5.60 -105.05 -0.59 -4.26 16 6 C 0.08 0.97 6.73 -82.33 -0.55 0.42 16 7 C -0.05 -0.43 5.83 -27.63 -0.16 -0.59 16 8 C -0.11 -0.86 5.90 -26.49 -0.16 -1.02 16 9 C -0.12 -1.18 5.39 -26.48 -0.14 -1.32 16 10 C 0.25 3.49 2.82 -68.81 -0.19 3.29 16 11 H 0.09 1.60 7.57 -51.93 -0.39 1.21 16 12 N -0.75 -11.12 5.01 -59.55 -0.30 -11.42 16 13 C 0.66 13.37 7.78 -86.93 -0.68 12.69 16 14 O -0.46 -11.40 11.03 5.29 0.06 -11.34 16 15 N -0.67 -13.40 5.39 -15.79 -0.09 -13.48 16 16 C 0.39 9.57 7.43 -154.99 -1.15 8.42 16 17 C -0.36 -8.22 9.95 -38.89 -0.39 -8.61 16 18 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 19 C -0.31 -7.94 9.83 -38.66 -0.38 -8.32 16 20 C 0.27 7.76 6.55 -85.00 -0.56 7.20 16 21 C -0.43 -11.93 9.14 -37.74 -0.34 -12.28 16 22 H 0.08 2.11 7.85 -52.48 -0.41 1.69 16 23 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 24 N -0.64 -18.07 8.98 55.55 0.50 -17.57 16 25 Si 0.89 19.81 29.56 -169.99 -5.02 14.79 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 N -0.47 -13.29 5.74 -10.26 -0.06 -13.35 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.46 7.90 -51.93 -0.41 0.05 16 33 H 0.19 3.95 7.05 -52.49 -0.37 3.58 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.38 4.44 8.62 -40.82 -0.35 4.09 16 41 H 0.39 6.08 8.72 -40.82 -0.36 5.73 16 42 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 45 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -35.50 370.16 -10.59 -46.08 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.07 Total: 12.41 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -5.31 Total: -1.16 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: 0.19 Total: -66.36 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.06 Total: -11.34 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.50 -10.59 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.140 kcal (2) G-P(sol) polarization free energy of solvation -35.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds