Wall clock time and date at job start Wed Apr 1 2020 01:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40302 * 126.09356 * 2 1 4 4 C 1.31063 * 108.27089 * 180.09858 * 3 2 1 5 5 C 1.39295 * 108.08064 * 359.97438 * 4 3 2 6 6 C 1.34327 * 126.09359 * 180.02562 * 2 1 3 7 7 C 1.50827 * 128.03151 * 359.86806 * 6 2 1 8 8 C 1.53369 * 108.37924 * 196.58138 * 7 6 2 9 9 C 1.53102 * 109.51019 * 310.05215 * 8 7 6 10 10 C 1.50848 * 127.90012 * 179.90436 * 5 4 3 11 11 H 1.08998 * 109.71236 * 76.89312 * 10 5 4 12 12 N 1.46499 * 109.68127 * 316.34947 * 10 5 4 13 13 C 1.34775 * 119.99934 * 86.07804 * 12 10 5 14 14 O 1.21582 * 119.99786 * 0.02562 * 13 12 10 15 15 N 1.34769 * 119.99995 * 179.97438 * 13 12 10 16 16 C 1.39254 * 120.00078 * 185.14829 * 15 13 12 17 17 C 1.39682 * 119.57580 * 174.62290 * 16 15 13 18 18 C 1.38642 * 119.49670 * 179.97438 * 17 16 15 19 19 C 1.38356 * 118.66969 * 0.02562 * 18 17 16 20 20 C 1.40570 * 119.13157 * 0.02562 * 19 18 17 21 21 C 1.41331 * 119.78973 * 180.02562 * 20 19 18 22 22 H 1.08007 * 119.99565 * 359.97438 * 21 20 19 23 23 C 1.40027 * 120.00384 * 180.02562 * 21 20 19 24 24 N 1.30743 * 119.99841 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00089 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47117 * 59.99387 * 25 23 21 27 27 H 1.48499 * 109.46802 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46867 * 299.99530 * 25 23 21 29 29 N 1.31900 * 119.57200 * 354.35856 * 16 15 13 30 30 H 1.08995 * 109.47745 * 269.96039 * 1 2 3 31 31 H 1.09006 * 109.47234 * 29.96458 * 1 2 3 32 32 H 1.09004 * 109.47258 * 149.95659 * 1 2 3 33 33 H 1.08000 * 125.95924 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.68417 * 76.85915 * 7 6 2 35 35 H 1.09005 * 109.71324 * 316.31517 * 7 6 2 36 36 H 1.08998 * 109.46054 * 190.04166 * 8 7 6 37 37 H 1.09002 * 109.46067 * 70.06203 * 8 7 6 38 38 H 1.09000 * 109.46541 * 310.25977 * 9 8 7 39 39 H 1.09003 * 109.46361 * 190.27699 * 9 8 7 40 40 H 0.96996 * 119.99533 * 266.08224 * 12 10 5 41 41 H 0.97003 * 120.00376 * 5.15637 * 15 13 12 42 42 H 1.08003 * 120.24933 * 0.02562 * 17 16 15 43 43 H 1.08000 * 120.66881 * 179.97438 * 18 17 16 44 44 H 1.07999 * 120.43096 * 180.02562 * 19 18 17 45 45 H 0.96994 * 119.99793 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5392 0.7326 -0.0021 5 6 3.5455 -0.6604 -0.0030 6 6 2.2563 -1.0854 -0.0005 7 6 1.8437 -2.5362 0.0016 8 6 3.0539 -3.3825 0.4155 9 6 4.2698 -2.9809 -0.4238 10 6 4.7399 -1.5816 -0.0073 11 1 5.1764 -1.6225 0.9906 12 7 5.7371 -1.0921 -0.9624 13 6 6.6417 -0.1696 -0.5787 14 8 6.6304 0.2559 0.5602 15 7 7.5594 0.2804 -1.4571 16 6 8.5598 1.1517 -1.0339 17 6 9.5713 1.5237 -1.9224 18 6 10.5662 2.3918 -1.4995 19 6 10.5256 2.8654 -0.2002 20 6 9.4819 2.4530 0.6463 21 6 9.4266 2.9287 1.9759 22 1 10.1850 3.6066 2.3389 23 6 8.3891 2.5203 2.8231 24 7 7.4713 1.6992 2.3839 25 14 8.3157 3.1496 4.5804 26 1 8.2098 4.6308 4.5717 27 1 7.1299 2.5730 5.2635 28 1 9.5487 2.7457 5.3027 29 7 8.5370 1.6193 0.1993 30 1 -0.3634 -0.0007 1.0276 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3634 -0.8896 -0.5145 33 1 4.4105 1.3707 -0.0031 34 1 1.5170 -2.8264 -0.9969 35 1 1.0307 -2.6862 0.7120 36 1 2.8323 -4.4372 0.2524 37 1 3.2699 -3.2157 1.4708 38 1 3.9963 -2.9733 -1.4789 39 1 5.0752 -3.6975 -0.2625 40 1 5.7463 -1.4318 -1.8708 41 1 7.5230 -0.0026 -2.3843 42 1 9.5779 1.1387 -2.9315 43 1 11.3576 2.6916 -2.1705 44 1 11.2859 3.5432 0.1590 45 1 6.7525 1.4166 2.9706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881154722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:05 Heat of formation + Delta-G solvation = 87.667169 kcal Electronic energy + Delta-G solvation = -29991.239886 eV Core-core repulsion = 26010.421826 eV Total energy + Delta-G solvation = -3980.818060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53409 -40.98263 -39.50019 -37.67420 -35.86242 -35.05065 -34.75898 -33.87171 -32.15942 -31.03901 -30.43658 -29.47121 -27.43258 -27.37064 -24.63189 -23.52411 -22.95532 -22.85759 -21.75940 -21.24434 -19.81915 -19.59892 -18.60627 -18.10808 -17.61933 -16.84566 -16.46530 -16.22695 -16.12293 -15.69355 -15.58734 -15.45519 -14.99183 -14.76594 -14.59004 -14.53642 -14.25735 -13.86605 -13.82091 -13.69709 -13.61134 -13.29743 -12.87423 -12.75642 -12.71897 -12.54011 -12.29250 -12.08996 -11.77792 -11.77033 -11.60597 -11.50883 -11.41917 -10.82016 -10.72879 -10.17477 -9.86552 -9.77785 -9.21752 -9.03486 -8.72684 -7.98490 -6.37467 0.89283 1.01523 1.32418 1.37863 1.49370 1.53512 1.64716 1.67789 2.08956 2.27117 2.67148 3.08809 3.45900 3.63506 3.66699 3.93409 4.12100 4.12948 4.20794 4.28978 4.39352 4.39933 4.51124 4.59982 4.65825 4.68903 4.76615 4.77572 4.88502 4.92556 4.99870 5.02505 5.11078 5.20648 5.28556 5.30605 5.32147 5.44146 5.65072 5.71382 5.86946 5.91918 5.96591 6.09586 6.23037 6.37725 6.47962 6.73599 6.86128 7.11829 7.37521 8.13992 8.43321 8.61357 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.003767 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.227350 B = 7430.855877 C = 8658.912805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.371 5.371 3 N -0.350 5.350 4 C 0.059 3.941 5 C -0.264 4.264 6 C 0.098 3.902 7 C -0.048 4.048 8 C -0.106 4.106 9 C -0.114 4.114 10 C 0.248 3.752 11 H 0.053 0.947 12 N -0.728 5.728 13 C 0.657 3.343 14 O -0.508 6.508 15 N -0.664 5.664 16 C 0.367 3.633 17 C -0.347 4.347 18 C -0.034 4.034 19 C -0.334 4.334 20 C 0.238 3.762 21 C -0.467 4.467 22 H 0.084 0.916 23 C 0.011 3.989 24 N -0.677 5.677 25 Si 0.968 3.032 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.258 1.258 29 N -0.504 5.504 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.402 0.598 41 H 0.415 0.585 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.102 0.898 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.060 -15.196 -7.928 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.152 5.152 3 N -0.172 5.172 4 C -0.125 4.125 5 C -0.277 4.277 6 C -0.033 4.033 7 C -0.087 4.087 8 C -0.145 4.145 9 C -0.152 4.152 10 C 0.141 3.859 11 H 0.071 0.929 12 N -0.387 5.387 13 C 0.355 3.645 14 O -0.375 6.375 15 N -0.314 5.314 16 C 0.127 3.873 17 C -0.373 4.373 18 C -0.058 4.058 19 C -0.357 4.357 20 C 0.113 3.887 21 C -0.498 4.498 22 H 0.102 0.898 23 C -0.215 4.215 24 N -0.296 5.296 25 Si 0.789 3.211 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.182 1.182 29 N -0.223 5.223 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.238 0.762 41 H 0.252 0.748 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.121 0.879 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.941 -14.162 -6.192 23.681 hybrid contribution 1.596 0.568 -0.513 1.770 sum -16.345 -13.594 -6.706 22.291 Atomic orbital electron populations 1.22218 0.71981 1.06103 1.04575 1.48613 1.07740 1.02907 1.55979 1.77464 1.02038 1.09446 1.28297 1.23290 0.94049 0.96276 0.98865 1.20479 0.95686 0.93086 1.18453 1.21587 0.89786 0.92436 0.99538 1.20592 0.99646 0.83577 1.04865 1.21538 0.92410 1.00935 0.99576 1.21846 0.99105 0.92593 1.01661 1.18995 0.83227 0.91712 0.91931 0.92883 1.45064 1.33320 1.44693 1.15650 1.16737 0.80559 0.81395 0.85817 1.91386 1.71414 1.57250 1.17489 1.42448 1.28579 1.47794 1.12612 1.18846 0.87259 0.89655 0.91541 1.20911 1.01564 1.13829 1.00994 1.21010 0.96537 0.93712 0.94569 1.21788 1.04641 1.12256 0.96975 1.18856 0.87468 0.88479 0.93914 1.19834 1.09577 1.25059 0.95361 0.89806 1.26985 0.95238 0.95353 1.03912 1.70546 1.05849 1.18106 1.35065 0.85491 0.78495 0.79351 0.77744 1.18632 1.20309 1.18198 1.68674 1.26590 1.15010 1.12040 0.89746 0.89509 0.85834 0.84264 0.86897 0.87882 0.86856 0.92476 0.89357 0.89908 0.76217 0.74818 0.85164 0.84587 0.87936 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 11.32 127.77 1.45 2.73 16 2 N -0.37 -9.72 4.00 -356.02 -1.43 -11.14 16 3 N -0.35 -13.10 12.59 -57.28 -0.72 -13.82 16 4 C 0.06 2.37 11.40 85.06 0.97 3.34 16 5 C -0.26 -8.35 5.60 -20.14 -0.11 -8.47 16 6 C 0.10 2.31 6.73 41.64 0.28 2.59 16 7 C -0.05 -0.55 5.83 30.01 0.17 -0.38 16 8 C -0.11 -1.26 5.90 30.75 0.18 -1.08 16 9 C -0.11 -1.86 5.39 30.76 0.17 -1.69 16 10 C 0.25 7.13 2.82 44.42 0.13 7.25 16 11 H 0.05 1.96 7.57 -2.39 -0.02 1.94 16 12 N -0.73 -22.08 5.01 -460.59 -2.31 -24.39 16 13 C 0.66 27.93 7.78 179.06 1.39 29.33 16 14 O -0.51 -27.37 11.03 -3.97 -0.04 -27.42 16 15 N -0.66 -26.91 5.39 -322.13 -1.74 -28.65 16 16 C 0.37 18.51 7.43 133.26 0.99 19.50 16 17 C -0.35 -15.41 9.95 22.72 0.23 -15.19 16 18 C -0.03 -1.54 10.15 22.39 0.23 -1.31 16 19 C -0.33 -17.55 9.83 22.87 0.22 -17.33 16 20 C 0.24 14.33 6.55 40.19 0.26 14.59 16 21 C -0.47 -27.78 9.14 23.47 0.21 -27.57 16 22 H 0.08 4.67 7.85 -2.91 -0.02 4.64 16 23 C 0.01 0.64 5.50 85.29 0.47 1.11 16 24 N -0.68 -40.91 8.98 21.84 0.20 -40.72 16 25 Si 0.97 43.10 29.56 68.60 2.03 45.13 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 29 N -0.50 -30.07 5.74 -186.36 -1.07 -31.14 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.12 0.74 7.90 -2.39 -0.02 0.73 16 33 H 0.14 6.83 7.05 -2.91 -0.02 6.80 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 38 H 0.09 1.11 8.10 -2.39 -0.02 1.10 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.40 8.92 8.62 -92.71 -0.80 8.12 16 41 H 0.42 12.48 8.72 -92.71 -0.81 11.67 16 42 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 43 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 44 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 45 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -87.91 370.16 1.60 -86.31 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -0.56 Total: 38.41 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 7.24 Total: 7.42 kcal Atomic # 7 Polarization: -142.79 SS G_CDS: -7.06 Total: -149.85 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.04 Total: -27.42 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -87.91 1.60 -86.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.976 kcal (2) G-P(sol) polarization free energy of solvation -87.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds