Wall clock time and date at job start Wed Apr 1 2020 01:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47842 * 110.99621 * 2 1 4 4 C 1.54905 * 104.79279 * 146.37110 * 3 2 1 5 5 C 1.55146 * 101.65140 * 322.92318 * 4 3 2 6 6 C 1.47446 * 111.00190 * 120.84416 * 2 1 3 7 7 H 1.08996 * 109.88598 * 117.17478 * 6 2 1 8 8 C 1.50700 * 109.88850 * 356.14586 * 6 2 1 9 9 C 1.35361 * 126.38451 * 117.06639 * 8 6 2 10 10 C 1.41511 * 105.50482 * 180.13848 * 9 8 6 11 11 C 1.47676 * 126.52141 * 179.84417 * 10 9 8 12 12 O 1.21567 * 119.99822 * 359.72144 * 11 10 9 13 13 N 1.34777 * 119.99941 * 179.71442 * 11 10 9 14 14 C 1.39386 * 119.99749 * 184.97174 * 13 11 10 15 15 C 1.38623 * 119.57804 * 185.61469 * 14 13 11 16 16 C 1.40803 * 118.79097 * 180.02562 * 15 14 13 17 17 C 1.41542 * 120.99541 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00290 * 326.67786 * 17 16 15 19 19 C 1.40039 * 119.99841 * 146.67370 * 17 16 15 20 20 N 1.30744 * 119.99849 * 3.40519 * 19 17 16 21 21 Si 1.86801 * 119.99857 * 183.40242 * 19 17 16 22 22 H 1.48506 * 109.46948 * 90.00235 * 21 19 17 23 23 H 1.48497 * 109.47096 * 209.99836 * 21 19 17 24 24 H 1.48494 * 109.47198 * 330.00553 * 21 19 17 25 25 C 1.41181 * 118.01278 * 0.02562 * 16 15 14 26 26 C 1.37594 * 119.01371 * 359.97438 * 25 16 15 27 27 N 1.32075 * 121.11296 * 0.02562 * 26 25 16 28 28 N 1.31823 * 106.96104 * 359.58686 * 10 9 8 29 29 N 1.28476 * 110.06911 * 0.26007 * 28 10 9 30 30 H 0.96996 * 124.88301 * 180.02562 * 29 28 10 31 31 H 1.09007 * 109.46901 * 306.52934 * 1 2 3 32 32 H 1.08996 * 109.47373 * 66.53373 * 1 2 3 33 33 H 1.09001 * 109.47072 * 186.53542 * 1 2 3 34 34 H 1.09002 * 110.37201 * 265.18991 * 3 2 1 35 35 H 1.08998 * 110.37502 * 27.42779 * 3 2 1 36 36 H 1.08994 * 110.99745 * 81.02209 * 4 3 2 37 37 H 1.09004 * 110.98659 * 204.79896 * 4 3 2 38 38 H 1.08999 * 110.70306 * 277.27283 * 5 4 3 39 39 H 1.08998 * 110.70337 * 154.04375 * 5 4 3 40 40 H 1.08002 * 127.24448 * 359.97438 * 9 8 6 41 41 H 0.97001 * 120.00254 * 4.98100 * 13 11 10 42 42 H 1.07998 * 120.60743 * 359.97438 * 15 14 13 43 43 H 0.97001 * 119.99447 * 180.02562 * 20 19 17 44 44 H 1.07990 * 120.49377 * 179.72862 * 25 16 15 45 45 H 1.07998 * 119.43986 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8294 5 6 2.9159 0.2821 1.9314 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8674 8 6 0.8613 -1.1292 2.0767 9 6 0.5192 -2.4000 2.3932 10 6 -0.6016 -2.2878 3.2499 11 6 -1.3501 -3.4006 3.8681 12 8 -1.0189 -4.5502 3.6518 13 7 -2.4003 -3.1418 4.6721 14 6 -3.0422 -4.1849 5.3377 15 6 -4.1911 -3.9258 6.0687 16 6 -4.8258 -4.9916 6.7349 17 6 -6.0016 -4.7800 7.4940 18 1 -6.1436 -3.8483 8.0212 19 6 -6.9808 -5.7788 7.5611 20 7 -6.7798 -6.9316 6.9780 21 14 -8.5742 -5.4641 8.4839 22 1 -9.5791 -4.8884 7.5544 23 1 -9.0870 -6.7433 9.0368 24 1 -8.3232 -4.5102 9.5940 25 6 -4.2542 -6.2777 6.6232 26 6 -3.1110 -6.4372 5.8744 27 7 -2.5459 -5.4110 5.2644 28 7 -0.8470 -1.0009 3.3956 29 7 -0.0017 -0.3113 2.7169 30 1 0.0145 0.6575 2.6713 31 1 -0.3633 0.6117 0.8258 32 1 -0.3634 0.4092 -0.9426 33 1 -0.3633 -1.0210 0.1170 34 1 2.2147 1.7038 -1.0182 35 1 1.2880 2.0595 0.4707 36 1 4.1302 0.9282 0.2241 37 1 3.5499 2.2722 1.2633 38 1 2.3745 0.7747 2.7391 39 1 3.8001 -0.2279 2.3136 40 1 0.9989 -3.3084 2.0599 41 1 -2.7096 -2.2297 4.7876 42 1 -4.5918 -2.9246 6.1269 43 1 -7.4583 -7.6233 7.0243 44 1 -4.7054 -7.1230 7.1213 45 1 -2.6677 -7.4179 5.7846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897008402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:17 Heat of formation + Delta-G solvation = 97.216643 kcal Electronic energy + Delta-G solvation = -28374.097903 eV Core-core repulsion = 24393.693939 eV Total energy + Delta-G solvation = -3980.403963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.07335 -39.61930 -39.20981 -37.63291 -34.43471 -33.54314 -32.70383 -32.05058 -31.93891 -30.63127 -28.70243 -28.04498 -26.13731 -25.95342 -24.30965 -22.36494 -21.81862 -21.75866 -21.20751 -20.94635 -19.31658 -17.93089 -17.64696 -16.85863 -16.67246 -15.94639 -15.78777 -15.60436 -15.05118 -14.56444 -14.39005 -14.27162 -14.11085 -13.92488 -13.76813 -13.64521 -13.52942 -13.09725 -12.93098 -12.35393 -12.28776 -12.08168 -11.96054 -11.80178 -11.62765 -11.42780 -11.35745 -11.23161 -10.95920 -10.92940 -10.37667 -10.02447 -9.75918 -9.55923 -9.42329 -9.35983 -9.35137 -8.77084 -7.93174 -7.77038 -6.99871 -6.65256 -4.60910 1.52475 1.93908 2.60048 2.75136 2.85475 3.05093 3.09068 3.25176 3.51980 3.52394 3.87939 3.92329 3.99499 4.11209 4.17956 4.45374 4.56199 4.74959 4.81552 4.84001 4.95661 5.02049 5.06455 5.27352 5.33254 5.35880 5.46620 5.51220 5.58788 5.62437 5.67210 5.79121 6.01133 6.26359 6.38837 6.45559 6.58892 6.62271 6.74055 6.81265 6.95587 7.19812 7.41564 7.53132 7.62919 7.89160 7.97442 8.21370 8.49683 8.69824 8.80078 8.85528 9.67973 10.19408 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029143 B = 0.001964 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.537339 B =14252.342055 C =14740.255754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.130 4.130 5 C -0.139 4.139 6 C 0.141 3.859 7 H 0.116 0.884 8 C -0.003 4.003 9 C -0.161 4.161 10 C 0.002 3.998 11 C 0.586 3.414 12 O -0.469 6.469 13 N -0.647 5.647 14 C 0.344 3.656 15 C -0.290 4.290 16 C 0.143 3.857 17 C -0.460 4.460 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.801 5.801 21 Si 0.919 3.081 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.213 4.213 26 C 0.100 3.900 27 N -0.549 5.549 28 N -0.257 5.257 29 N -0.382 5.382 30 H 0.439 0.561 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.165 0.835 41 H 0.412 0.588 42 H 0.103 0.897 43 H 0.281 0.719 44 H 0.136 0.864 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 16.659 -10.948 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.168 4.168 5 C -0.177 4.177 6 C 0.032 3.968 7 H 0.134 0.866 8 C -0.129 4.129 9 C -0.190 4.190 10 C -0.160 4.160 11 C 0.369 3.631 12 O -0.336 6.336 13 N -0.293 5.293 14 C 0.117 3.883 15 C -0.316 4.316 16 C 0.134 3.866 17 C -0.492 4.492 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.428 5.428 21 Si 0.743 3.257 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.236 4.236 26 C -0.051 4.051 27 N -0.268 5.268 28 N -0.093 5.093 29 N -0.098 5.098 30 H 0.284 0.716 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.182 0.818 41 H 0.247 0.753 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.154 0.846 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.563 15.858 -11.584 25.057 hybrid contribution -1.609 1.170 1.203 2.325 sum 13.954 17.028 -10.380 24.340 Atomic orbital electron populations 1.22734 0.87054 1.02633 1.00772 1.63868 1.08522 1.14290 1.37887 1.23196 0.95666 0.89230 1.01194 1.22734 0.97848 0.99419 0.96759 1.22902 1.00165 0.96829 0.97852 1.21214 0.90627 0.98628 0.86310 0.86612 1.21562 0.97985 0.91062 1.02274 1.21560 0.98540 0.96956 1.01931 1.22241 0.99707 0.90543 1.03520 1.16966 0.80265 0.86668 0.79249 1.90890 1.65292 1.19643 1.57733 1.43252 1.31067 1.09942 1.45033 1.17973 0.90283 0.87158 0.92931 1.21351 1.00455 1.00476 1.09326 1.17641 0.90484 0.90387 0.88053 1.19505 1.01132 1.01444 1.27087 0.90247 1.25933 1.00610 0.94017 0.93863 1.69725 1.34440 1.04024 1.34598 0.86143 0.80766 0.78729 0.80030 1.19459 1.20160 1.18597 1.22457 0.96734 0.99821 1.04632 1.21973 0.93569 0.95389 0.94191 1.67178 1.34778 0.97916 1.26896 1.73607 1.15081 1.05035 1.15558 1.43480 1.22086 1.09560 1.34638 0.71619 0.95834 0.90980 0.90382 0.89594 0.93610 0.90004 0.90420 0.91562 0.89514 0.81789 0.75277 0.87858 0.90835 0.84609 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 8.31 60.07 0.50 0.63 16 2 N -0.52 -3.85 5.44 -232.95 -1.27 -5.12 16 3 C 0.03 0.19 6.73 -2.30 -0.02 0.17 16 4 C -0.13 -0.57 7.08 -24.59 -0.17 -0.74 16 5 C -0.14 -0.77 6.46 -24.91 -0.16 -0.93 16 6 C 0.14 1.04 3.90 -67.88 -0.26 0.78 16 7 H 0.12 0.85 8.12 -51.93 -0.42 0.43 16 8 C 0.00 -0.03 3.65 -82.21 -0.30 -0.33 16 9 C -0.16 -2.10 10.71 -39.36 -0.42 -2.52 16 10 C 0.00 0.03 7.13 -82.77 -0.59 -0.57 16 11 C 0.59 11.75 7.77 -12.41 -0.10 11.65 16 12 O -0.47 -11.07 15.21 5.31 0.08 -10.99 16 13 N -0.65 -13.08 5.38 -12.40 -0.07 -13.14 16 14 C 0.34 8.36 7.40 -154.77 -1.15 7.22 16 15 C -0.29 -7.16 9.73 -38.47 -0.37 -7.53 16 16 C 0.14 3.81 5.58 -106.55 -0.59 3.22 16 17 C -0.46 -12.00 9.11 -37.65 -0.34 -12.34 16 18 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.81 5.43 -17.34 -0.09 1.72 16 20 N -0.80 -20.52 10.63 55.55 0.59 -19.93 16 21 Si 0.92 18.51 29.56 -169.99 -5.03 13.48 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 C -0.21 -5.62 8.77 -38.70 -0.34 -5.96 16 26 C 0.10 2.54 11.15 -17.68 -0.20 2.34 16 27 N -0.55 -14.30 7.88 -12.54 -0.10 -14.40 16 28 N -0.26 -3.40 11.93 33.42 0.40 -3.00 16 29 N -0.38 -3.69 5.13 33.50 0.17 -3.51 16 30 H 0.44 2.94 7.88 -190.44 -1.50 1.44 16 31 H 0.02 0.17 5.48 -51.93 -0.28 -0.11 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.78 7.11 -51.93 -0.37 0.41 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.22 7.67 -51.93 -0.40 -0.18 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.37 7.53 -51.93 -0.39 -0.02 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.41 7.04 8.43 -40.82 -0.34 6.69 16 42 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 44 H 0.14 3.62 6.19 -52.49 -0.32 3.30 16 45 H 0.13 2.82 8.06 -52.49 -0.42 2.40 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -32.33 370.83 -11.20 -43.53 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.96 Total: 10.69 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -4.61 Total: -3.19 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.27 Total: -59.11 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.33 -11.20 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897008402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.746 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds