Wall clock time and date at job start Wed Apr 1 2020 01:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47842 * 110.99621 * 2 1 4 4 C 1.54905 * 104.79279 * 146.37110 * 3 2 1 5 5 C 1.55146 * 101.65140 * 322.92318 * 4 3 2 6 6 C 1.47446 * 111.00190 * 120.84416 * 2 1 3 7 7 H 1.08996 * 109.88598 * 117.17478 * 6 2 1 8 8 C 1.50700 * 109.88850 * 356.14586 * 6 2 1 9 9 C 1.35361 * 126.38451 * 117.06639 * 8 6 2 10 10 C 1.41511 * 105.50482 * 180.13848 * 9 8 6 11 11 C 1.47676 * 126.52141 * 179.84417 * 10 9 8 12 12 O 1.21567 * 119.99822 * 359.72144 * 11 10 9 13 13 N 1.34777 * 119.99941 * 179.71442 * 11 10 9 14 14 C 1.39386 * 119.99749 * 184.97174 * 13 11 10 15 15 C 1.38623 * 119.57804 * 185.61469 * 14 13 11 16 16 C 1.40803 * 118.79097 * 180.02562 * 15 14 13 17 17 C 1.41542 * 120.99541 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00290 * 326.67786 * 17 16 15 19 19 C 1.40039 * 119.99841 * 146.67370 * 17 16 15 20 20 N 1.30744 * 119.99849 * 3.40519 * 19 17 16 21 21 Si 1.86801 * 119.99857 * 183.40242 * 19 17 16 22 22 H 1.48506 * 109.46948 * 90.00235 * 21 19 17 23 23 H 1.48497 * 109.47096 * 209.99836 * 21 19 17 24 24 H 1.48494 * 109.47198 * 330.00553 * 21 19 17 25 25 C 1.41181 * 118.01278 * 0.02562 * 16 15 14 26 26 C 1.37594 * 119.01371 * 359.97438 * 25 16 15 27 27 N 1.32075 * 121.11296 * 0.02562 * 26 25 16 28 28 N 1.31823 * 106.96104 * 359.58686 * 10 9 8 29 29 N 1.28476 * 110.06911 * 0.26007 * 28 10 9 30 30 H 0.96996 * 124.88301 * 180.02562 * 29 28 10 31 31 H 1.09007 * 109.46901 * 306.52934 * 1 2 3 32 32 H 1.08996 * 109.47373 * 66.53373 * 1 2 3 33 33 H 1.09001 * 109.47072 * 186.53542 * 1 2 3 34 34 H 1.09002 * 110.37201 * 265.18991 * 3 2 1 35 35 H 1.08998 * 110.37502 * 27.42779 * 3 2 1 36 36 H 1.08994 * 110.99745 * 81.02209 * 4 3 2 37 37 H 1.09004 * 110.98659 * 204.79896 * 4 3 2 38 38 H 1.08999 * 110.70306 * 277.27283 * 5 4 3 39 39 H 1.08998 * 110.70337 * 154.04375 * 5 4 3 40 40 H 1.08002 * 127.24448 * 359.97438 * 9 8 6 41 41 H 0.97001 * 120.00254 * 4.98100 * 13 11 10 42 42 H 1.07998 * 120.60743 * 359.97438 * 15 14 13 43 43 H 0.97001 * 119.99447 * 180.02562 * 20 19 17 44 44 H 1.07990 * 120.49377 * 179.72862 * 25 16 15 45 45 H 1.07998 * 119.43986 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8294 5 6 2.9159 0.2821 1.9314 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8674 8 6 0.8613 -1.1292 2.0767 9 6 0.5192 -2.4000 2.3932 10 6 -0.6016 -2.2878 3.2499 11 6 -1.3501 -3.4006 3.8681 12 8 -1.0189 -4.5502 3.6518 13 7 -2.4003 -3.1418 4.6721 14 6 -3.0422 -4.1849 5.3377 15 6 -4.1911 -3.9258 6.0687 16 6 -4.8258 -4.9916 6.7349 17 6 -6.0016 -4.7800 7.4940 18 1 -6.1436 -3.8483 8.0212 19 6 -6.9808 -5.7788 7.5611 20 7 -6.7798 -6.9316 6.9780 21 14 -8.5742 -5.4641 8.4839 22 1 -9.5791 -4.8884 7.5544 23 1 -9.0870 -6.7433 9.0368 24 1 -8.3232 -4.5102 9.5940 25 6 -4.2542 -6.2777 6.6232 26 6 -3.1110 -6.4372 5.8744 27 7 -2.5459 -5.4110 5.2644 28 7 -0.8470 -1.0009 3.3956 29 7 -0.0017 -0.3113 2.7169 30 1 0.0145 0.6575 2.6713 31 1 -0.3633 0.6117 0.8258 32 1 -0.3634 0.4092 -0.9426 33 1 -0.3633 -1.0210 0.1170 34 1 2.2147 1.7038 -1.0182 35 1 1.2880 2.0595 0.4707 36 1 4.1302 0.9282 0.2241 37 1 3.5499 2.2722 1.2633 38 1 2.3745 0.7747 2.7391 39 1 3.8001 -0.2279 2.3136 40 1 0.9989 -3.3084 2.0599 41 1 -2.7096 -2.2297 4.7876 42 1 -4.5918 -2.9246 6.1269 43 1 -7.4583 -7.6233 7.0243 44 1 -4.7054 -7.1230 7.1213 45 1 -2.6677 -7.4179 5.7846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897008402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:17 Heat of formation + Delta-G solvation = 74.968144 kcal Electronic energy + Delta-G solvation = -28375.062670 eV Core-core repulsion = 24393.693939 eV Total energy + Delta-G solvation = -3981.368731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.05861 -41.20489 -39.99055 -39.41299 -36.26940 -35.36562 -33.30942 -32.97525 -32.84118 -32.60022 -30.41936 -28.84428 -27.92253 -26.72627 -25.71028 -23.73247 -23.32865 -22.74552 -22.16535 -21.84518 -20.83571 -19.68420 -18.60590 -18.18208 -17.68571 -17.31160 -16.94140 -16.71695 -16.34008 -16.05712 -15.91694 -15.81451 -15.36228 -15.15110 -14.86715 -14.66407 -14.51131 -14.33917 -14.17209 -14.11121 -13.58323 -13.21792 -12.95527 -12.76940 -12.70700 -12.53552 -12.30351 -12.15453 -12.09119 -12.02104 -11.84043 -11.64956 -11.53934 -11.33087 -11.18840 -10.49625 -10.24106 -9.92699 -9.71884 -9.39107 -8.90269 -8.54005 -6.61006 0.28340 0.79811 0.91596 1.11935 1.41099 1.55485 1.56313 1.67213 2.06751 2.22041 2.35595 2.84365 2.97555 3.17485 3.37117 3.57148 3.68564 3.73235 3.88891 4.09113 4.22685 4.28104 4.35841 4.38992 4.47483 4.53730 4.60722 4.70067 4.80428 4.88743 4.89403 4.91595 4.96536 5.01785 5.05013 5.14556 5.19055 5.27154 5.28730 5.44730 5.60300 5.82267 5.85844 5.96133 5.98946 6.09265 6.36765 6.55248 6.70113 6.79301 6.83834 7.16543 7.75559 8.33471 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029143 B = 0.001964 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.537339 B =14252.342055 C =14740.255754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.530 5.530 3 C 0.031 3.969 4 C -0.122 4.122 5 C -0.136 4.136 6 C 0.141 3.859 7 H 0.117 0.883 8 C 0.027 3.973 9 C -0.180 4.180 10 C -0.025 4.025 11 C 0.586 3.414 12 O -0.512 6.512 13 N -0.640 5.640 14 C 0.342 3.658 15 C -0.300 4.300 16 C 0.115 3.885 17 C -0.485 4.485 18 H 0.086 0.914 19 C 0.030 3.970 20 N -0.829 5.829 21 Si 0.996 3.004 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.255 1.255 25 C -0.232 4.232 26 C 0.096 3.904 27 N -0.572 5.572 28 N -0.257 5.257 29 N -0.358 5.358 30 H 0.456 0.544 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.163 0.837 41 H 0.425 0.575 42 H 0.123 0.877 43 H 0.289 0.711 44 H 0.126 0.874 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.584 19.461 -11.322 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.254 5.254 3 C -0.096 4.096 4 C -0.160 4.160 5 C -0.175 4.175 6 C 0.032 3.968 7 H 0.135 0.865 8 C -0.100 4.100 9 C -0.209 4.209 10 C -0.185 4.185 11 C 0.372 3.628 12 O -0.382 6.382 13 N -0.287 5.287 14 C 0.114 3.886 15 C -0.325 4.325 16 C 0.107 3.893 17 C -0.517 4.517 18 H 0.104 0.896 19 C -0.185 4.185 20 N -0.456 5.456 21 Si 0.816 3.184 22 H -0.189 1.189 23 H -0.192 1.192 24 H -0.178 1.178 25 C -0.255 4.255 26 C -0.055 4.055 27 N -0.292 5.292 28 N -0.094 5.094 29 N -0.076 5.076 30 H 0.305 0.695 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.181 0.819 41 H 0.264 0.736 42 H 0.141 0.859 43 H 0.100 0.900 44 H 0.144 0.856 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.977 18.717 -11.971 27.366 hybrid contribution -1.645 0.389 1.207 2.078 sum 14.332 19.106 -10.763 26.197 Atomic orbital electron populations 1.22687 0.87580 1.01238 1.01584 1.63892 1.08082 1.15861 1.37570 1.23302 0.96284 0.88039 1.01953 1.22722 0.97333 0.99822 0.96081 1.22914 0.99925 0.96605 0.98070 1.21366 0.89827 0.99488 0.86146 0.86490 1.21812 0.97565 0.89776 1.00835 1.21656 0.98370 0.98451 1.02392 1.21608 1.00962 0.90305 1.05618 1.17479 0.79681 0.87354 0.78334 1.90852 1.66366 1.21805 1.59220 1.43222 1.31073 1.09723 1.44667 1.18232 0.90288 0.87517 0.92574 1.21522 1.00654 1.01021 1.09311 1.18055 0.91274 0.91113 0.88860 1.19822 1.01615 1.02442 1.27796 0.89597 1.26912 1.03955 0.93333 0.94274 1.69797 1.35900 1.04899 1.34975 0.84988 0.75785 0.78967 0.78637 1.18886 1.19190 1.17846 1.22414 0.97508 0.99746 1.05869 1.22283 0.93317 0.96284 0.93623 1.67284 1.35482 0.98741 1.27646 1.73524 1.15793 1.04147 1.15982 1.43533 1.20791 1.10337 1.32931 0.69542 0.95116 0.90180 0.92793 0.89065 0.92627 0.89747 0.88773 0.91270 0.88820 0.81943 0.73634 0.85889 0.89997 0.85579 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.31 127.69 1.06 1.31 16 2 N -0.53 -6.60 5.44 -890.92 -4.85 -11.45 16 3 C 0.03 0.23 6.73 86.77 0.58 0.82 16 4 C -0.12 -0.65 7.08 31.98 0.23 -0.42 16 5 C -0.14 -1.09 6.46 31.78 0.21 -0.88 16 6 C 0.14 1.78 3.90 44.51 0.17 1.95 16 7 H 0.12 1.51 8.12 -2.39 -0.02 1.49 16 8 C 0.03 0.49 3.65 41.40 0.15 0.64 16 9 C -0.18 -4.67 10.71 22.41 0.24 -4.43 16 10 C -0.03 -0.80 7.13 42.45 0.30 -0.49 16 11 C 0.59 24.14 7.77 86.74 0.67 24.81 16 12 O -0.51 -25.17 15.21 -3.93 -0.06 -25.23 16 13 N -0.64 -26.32 5.38 -311.42 -1.68 -27.99 16 14 C 0.34 17.04 7.40 132.79 0.98 18.02 16 15 C -0.30 -15.06 9.73 22.99 0.22 -14.83 16 16 C 0.12 6.33 5.58 -21.11 -0.12 6.21 16 17 C -0.49 -25.63 9.11 23.52 0.21 -25.41 16 18 H 0.09 4.27 7.85 -2.91 -0.02 4.25 16 19 C 0.03 1.49 5.43 85.29 0.46 1.95 16 20 N -0.83 -42.97 10.63 21.84 0.23 -42.73 16 21 Si 1.00 37.34 29.56 68.60 2.03 39.37 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 25 C -0.23 -12.67 8.77 22.84 0.20 -12.47 16 26 C 0.10 5.05 11.15 84.50 0.94 5.99 16 27 N -0.57 -30.75 7.88 -193.58 -1.53 -32.28 16 28 N -0.26 -6.51 11.93 -48.19 -0.57 -7.09 16 29 N -0.36 -6.17 5.13 -47.93 -0.25 -6.41 16 30 H 0.46 4.71 7.88 -219.99 -1.73 2.98 16 31 H 0.03 0.37 5.48 -2.38 -0.01 0.35 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.03 7.11 -2.39 -0.02 1.02 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.33 7.67 -2.39 -0.02 0.31 16 36 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.07 0.53 7.53 -2.39 -0.02 0.51 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.43 14.57 8.43 -92.71 -0.78 13.79 16 42 H 0.12 5.50 8.06 -2.91 -0.02 5.48 16 43 H 0.29 13.54 8.29 -92.71 -0.77 12.77 16 44 H 0.13 7.02 6.19 -2.92 -0.02 7.00 16 45 H 0.14 6.72 8.06 -2.91 -0.02 6.70 16 Total: -1.00 -72.04 370.83 -1.60 -73.64 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -1.46 Total: 37.41 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.53 Total: 2.76 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -8.64 Total: -127.96 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.06 Total: -25.23 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -72.04 -1.60 -73.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897008402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.609 kcal (2) G-P(sol) polarization free energy of solvation -72.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds