Wall clock time and date at job start Wed Apr 1 2020 01:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48530 * 111.00293 * 2 1 4 4 C 1.54940 * 103.22673 * 159.72190 * 3 2 1 5 5 C 1.54585 * 102.92264 * 322.58427 * 4 3 2 6 6 C 1.47902 * 110.99911 * 117.39896 * 2 1 3 7 7 H 1.08993 * 110.08106 * 333.59678 * 6 2 1 8 8 C 1.50694 * 109.91771 * 94.80177 * 6 2 1 9 9 C 1.35364 * 126.38375 * 232.58637 * 8 6 2 10 10 C 1.41519 * 105.50423 * 180.24721 * 9 8 6 11 11 C 1.47670 * 126.51704 * 179.77437 * 10 9 8 12 12 O 1.21565 * 120.00328 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99754 * 179.97438 * 11 10 9 14 14 C 1.39386 * 120.00219 * 175.13286 * 13 11 10 15 15 C 1.38624 * 119.58284 * 184.90087 * 14 13 11 16 16 C 1.40802 * 118.78847 * 179.71661 * 15 14 13 17 17 C 1.41549 * 120.98848 * 180.25923 * 16 15 14 18 18 H 1.08007 * 119.99376 * 203.98058 * 17 16 15 19 19 C 1.40020 * 120.00762 * 23.98076 * 17 16 15 20 20 N 1.30749 * 119.99503 * 16.71414 * 19 17 16 21 21 Si 1.86798 * 120.00322 * 196.71917 * 19 17 16 22 22 H 1.48497 * 109.47190 * 60.00245 * 21 19 17 23 23 H 1.48506 * 109.47198 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46945 * 299.99594 * 21 19 17 25 25 C 1.41179 * 118.01484 * 0.53623 * 16 15 14 26 26 C 1.37584 * 119.01438 * 359.74032 * 25 16 15 27 27 N 1.32081 * 121.11455 * 359.97438 * 26 25 16 28 28 N 1.31819 * 106.95613 * 359.62861 * 10 9 8 29 29 N 1.28468 * 110.07328 * 0.38676 * 28 10 9 30 30 H 0.97001 * 124.87954 * 179.74945 * 29 28 10 31 31 H 1.09007 * 109.46778 * 302.60384 * 1 2 3 32 32 H 1.08995 * 109.47248 * 62.59833 * 1 2 3 33 33 H 1.09002 * 109.47728 * 182.60591 * 1 2 3 34 34 H 1.09000 * 110.66612 * 41.28670 * 3 2 1 35 35 H 1.09005 * 110.80859 * 278.22519 * 3 2 1 36 36 H 1.08997 * 110.71925 * 204.22328 * 4 3 2 37 37 H 1.09004 * 110.87425 * 81.01776 * 4 3 2 38 38 H 1.09001 * 110.31480 * 263.04371 * 5 4 3 39 39 H 1.09001 * 110.30806 * 140.86856 * 5 4 3 40 40 H 1.08005 * 127.24825 * 359.97438 * 9 8 6 41 41 H 0.97005 * 119.99939 * 355.12819 * 13 11 10 42 42 H 1.08000 * 120.59943 * 359.97438 * 15 14 13 43 43 H 0.97000 * 119.99447 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.49465 * 179.71977 * 25 16 15 45 45 H 1.08002 * 119.44289 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2105 0.5227 5 6 3.2983 0.1053 1.5930 6 6 1.9990 -0.6354 1.2259 7 1 1.2771 -0.5432 2.0373 8 6 2.2937 -2.0899 0.9640 9 6 1.8509 -3.1424 1.6909 10 6 2.3919 -4.2898 1.0635 11 6 2.2028 -5.6927 1.4839 12 8 1.5242 -5.9487 2.4595 13 7 2.7819 -6.6894 0.7855 14 6 2.6884 -8.0040 1.2390 15 6 3.3717 -9.0085 0.5714 16 6 3.2703 -10.3297 1.0475 17 6 3.9527 -11.3904 0.4049 18 1 3.5924 -12.4036 0.5054 19 6 5.0947 -11.1261 -0.3610 20 7 5.7212 -9.9862 -0.2285 21 14 5.7230 -12.4020 -1.5721 22 1 4.6717 -12.6860 -2.5818 23 1 6.9358 -11.8826 -2.2537 24 1 6.0606 -13.6514 -0.8441 25 6 2.4630 -10.5658 2.1814 26 6 1.8178 -9.5049 2.7738 27 7 1.9434 -8.2786 2.2996 28 7 3.0939 -3.8681 0.0305 29 7 3.0491 -2.5861 -0.0393 30 1 3.4939 -2.0515 -0.7155 31 1 -0.3633 0.5538 0.8658 32 1 -0.3633 0.4729 -0.9123 33 1 -0.3634 -1.0266 0.0467 34 1 1.4238 2.0204 0.6729 35 1 2.0040 1.8004 -1.0085 36 1 3.8123 2.1350 0.9715 37 1 4.1140 0.8846 -0.2773 38 1 3.2137 0.5484 2.5853 39 1 4.1470 -0.5776 1.5539 40 1 1.2213 -3.1126 2.5680 41 1 3.2638 -6.4917 -0.0329 42 1 3.9742 -8.7811 -0.2956 43 1 6.5121 -9.8030 -0.7594 44 1 2.3532 -11.5645 2.5776 45 1 1.1981 -9.6777 3.6413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897008403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:20 Heat of formation + Delta-G solvation = 85.019690 kcal Electronic energy + Delta-G solvation = -28339.823385 eV Core-core repulsion = 24358.890522 eV Total energy + Delta-G solvation = -3980.932863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.66592 -39.45747 -39.15565 -37.54956 -34.27180 -33.66987 -32.69649 -31.96709 -31.71342 -30.47900 -28.66666 -27.96762 -26.01165 -25.94252 -24.15147 -22.21053 -21.89023 -21.66149 -21.02916 -20.78511 -19.25565 -17.91505 -17.50711 -16.81237 -16.45774 -15.80756 -15.61215 -15.18719 -15.13216 -14.79663 -14.18959 -14.16282 -14.07985 -14.03985 -13.59443 -13.58635 -13.47372 -12.92397 -12.74239 -12.55844 -12.23165 -12.12899 -11.91379 -11.84241 -11.55398 -11.41235 -11.21723 -11.17838 -10.85755 -10.76820 -10.27566 -10.13082 -9.69235 -9.51347 -9.28924 -9.22582 -9.08480 -8.96299 -7.95296 -7.68511 -6.96337 -6.75727 -4.56299 1.75315 2.09895 2.82217 2.87293 2.90388 3.03981 3.06824 3.30824 3.46128 3.73088 3.88328 4.00051 4.12578 4.15063 4.43158 4.59235 4.63830 4.73025 4.83227 4.96049 4.99379 5.04875 5.22372 5.29945 5.39024 5.41967 5.52916 5.58243 5.62984 5.67862 5.74437 5.81878 6.06948 6.30757 6.43046 6.48903 6.64813 6.73327 6.85970 6.99655 7.04139 7.15617 7.44622 7.51858 7.79615 7.92647 8.07369 8.28655 8.46965 8.75797 8.79228 8.95580 9.75078 10.11214 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.002216 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.557283 B =12634.347649 C =13635.868597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.034 3.966 4 C -0.126 4.126 5 C -0.129 4.129 6 C 0.134 3.866 7 H 0.083 0.917 8 C 0.030 3.970 9 C -0.176 4.176 10 C -0.002 4.002 11 C 0.587 3.413 12 O -0.474 6.474 13 N -0.644 5.644 14 C 0.338 3.662 15 C -0.241 4.241 16 C 0.143 3.857 17 C -0.456 4.456 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.786 5.786 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.285 4.285 26 C 0.119 3.881 27 N -0.555 5.555 28 N -0.258 5.258 29 N -0.366 5.366 30 H 0.444 0.556 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.159 0.841 41 H 0.413 0.587 42 H 0.128 0.872 43 H 0.283 0.717 44 H 0.102 0.898 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 23.242 -2.422 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.164 4.164 5 C -0.167 4.167 6 C 0.024 3.976 7 H 0.101 0.899 8 C -0.097 4.097 9 C -0.205 4.205 10 C -0.163 4.163 11 C 0.369 3.631 12 O -0.341 6.341 13 N -0.290 5.290 14 C 0.114 3.886 15 C -0.267 4.267 16 C 0.135 3.865 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.141 4.141 20 N -0.412 5.412 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.309 4.309 26 C -0.035 4.035 27 N -0.274 5.274 28 N -0.095 5.095 29 N -0.079 5.079 30 H 0.288 0.712 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.177 0.823 41 H 0.249 0.751 42 H 0.146 0.854 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.874 23.241 -2.661 23.568 hybrid contribution 0.571 -0.135 -0.433 0.729 sum -2.303 23.105 -3.093 23.425 Atomic orbital electron populations 1.22533 0.86846 1.02790 1.01100 1.64555 1.09065 1.14978 1.36038 1.23274 0.95030 0.89495 1.01589 1.22530 0.96577 0.98770 0.98491 1.22530 0.96892 0.97652 0.99669 1.20855 0.97131 0.87492 0.92149 0.89949 1.20945 1.00130 0.95420 0.93239 1.21470 1.05983 0.89434 1.03584 1.22152 1.02542 0.95626 0.95992 1.16991 0.80529 0.82024 0.83534 1.90867 1.35815 1.82421 1.25042 1.43247 1.53711 1.04918 1.27105 1.18158 0.94650 0.82941 0.92870 1.21546 1.07742 0.92713 1.04671 1.17556 0.88282 0.92064 0.88584 1.19534 1.08340 0.94947 1.25870 0.90001 1.25963 0.95899 0.96238 0.96050 1.69781 1.14925 1.23295 1.33149 0.86314 0.78498 0.81059 0.80559 1.18721 1.20285 1.18897 1.21878 1.09241 0.98699 1.01078 1.21759 0.96643 0.87674 0.97421 1.67224 1.22982 1.22469 1.14768 1.73626 1.21128 0.93993 1.20709 1.43119 1.37414 1.04035 1.23329 0.71183 0.94933 0.90990 0.90798 0.93261 0.89625 0.90539 0.90633 0.90321 0.90457 0.82289 0.75087 0.85410 0.90645 0.87993 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.40 60.06 0.56 0.67 16 2 N -0.52 -3.82 5.17 -232.16 -1.20 -5.02 16 3 C 0.03 0.18 6.56 -1.90 -0.01 0.17 16 4 C -0.13 -0.62 7.06 -24.87 -0.18 -0.79 16 5 C -0.13 -0.81 6.56 -25.38 -0.17 -0.98 16 6 C 0.13 1.06 2.95 -67.79 -0.20 0.86 16 7 H 0.08 0.62 7.73 -51.93 -0.40 0.22 16 8 C 0.03 0.33 5.86 -82.21 -0.48 -0.15 16 9 C -0.18 -2.50 10.72 -39.36 -0.42 -2.93 16 10 C 0.00 -0.04 7.13 -82.77 -0.59 -0.63 16 11 C 0.59 12.55 7.78 -12.41 -0.10 12.45 16 12 O -0.47 -11.60 15.18 5.31 0.08 -11.52 16 13 N -0.64 -14.14 5.38 -12.40 -0.07 -14.21 16 14 C 0.34 8.65 7.41 -154.77 -1.15 7.50 16 15 C -0.24 -6.36 8.62 -38.47 -0.33 -6.69 16 16 C 0.14 3.87 5.60 -106.55 -0.60 3.27 16 17 C -0.46 -11.93 9.12 -37.65 -0.34 -12.27 16 18 H 0.08 2.04 7.90 -52.48 -0.41 1.62 16 19 C 0.08 1.92 5.20 -17.34 -0.09 1.83 16 20 N -0.79 -19.87 10.93 55.55 0.61 -19.26 16 21 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.29 -7.16 9.90 -38.70 -0.38 -7.54 16 26 C 0.12 2.95 11.15 -17.68 -0.20 2.75 16 27 N -0.56 -14.69 7.85 -12.54 -0.10 -14.79 16 28 N -0.26 -3.90 11.93 33.42 0.40 -3.50 16 29 N -0.37 -4.18 6.83 33.50 0.23 -3.96 16 30 H 0.44 3.81 8.96 -190.44 -1.71 2.10 16 31 H 0.03 0.19 8.01 -51.93 -0.42 -0.22 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.24 7.96 -51.93 -0.41 -0.17 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.56 7.68 -51.93 -0.40 0.16 16 40 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 41 H 0.41 8.06 8.43 -40.82 -0.34 7.72 16 42 H 0.13 3.36 6.21 -52.49 -0.33 3.03 16 43 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 44 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 45 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -32.65 379.38 -11.39 -44.04 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.36 Total: 11.78 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -4.67 Total: -2.48 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.13 Total: -60.75 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.65 -11.39 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897008403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.059 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds