Wall clock time and date at job start Wed Apr 1 2020 01:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48530 * 111.00293 * 2 1 4 4 C 1.54940 * 103.22673 * 159.72190 * 3 2 1 5 5 C 1.54585 * 102.92264 * 322.58427 * 4 3 2 6 6 C 1.47902 * 110.99911 * 117.39896 * 2 1 3 7 7 H 1.08993 * 110.08106 * 333.59678 * 6 2 1 8 8 C 1.50694 * 109.91771 * 94.80177 * 6 2 1 9 9 C 1.35364 * 126.38375 * 232.58637 * 8 6 2 10 10 C 1.41519 * 105.50423 * 180.24721 * 9 8 6 11 11 C 1.47670 * 126.51704 * 179.77437 * 10 9 8 12 12 O 1.21565 * 120.00328 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99754 * 179.97438 * 11 10 9 14 14 C 1.39386 * 120.00219 * 175.13286 * 13 11 10 15 15 C 1.38624 * 119.58284 * 184.90087 * 14 13 11 16 16 C 1.40802 * 118.78847 * 179.71661 * 15 14 13 17 17 C 1.41549 * 120.98848 * 180.25923 * 16 15 14 18 18 H 1.08007 * 119.99376 * 203.98058 * 17 16 15 19 19 C 1.40020 * 120.00762 * 23.98076 * 17 16 15 20 20 N 1.30749 * 119.99503 * 16.71414 * 19 17 16 21 21 Si 1.86798 * 120.00322 * 196.71917 * 19 17 16 22 22 H 1.48497 * 109.47190 * 60.00245 * 21 19 17 23 23 H 1.48506 * 109.47198 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46945 * 299.99594 * 21 19 17 25 25 C 1.41179 * 118.01484 * 0.53623 * 16 15 14 26 26 C 1.37584 * 119.01438 * 359.74032 * 25 16 15 27 27 N 1.32081 * 121.11455 * 359.97438 * 26 25 16 28 28 N 1.31819 * 106.95613 * 359.62861 * 10 9 8 29 29 N 1.28468 * 110.07328 * 0.38676 * 28 10 9 30 30 H 0.97001 * 124.87954 * 179.74945 * 29 28 10 31 31 H 1.09007 * 109.46778 * 302.60384 * 1 2 3 32 32 H 1.08995 * 109.47248 * 62.59833 * 1 2 3 33 33 H 1.09002 * 109.47728 * 182.60591 * 1 2 3 34 34 H 1.09000 * 110.66612 * 41.28670 * 3 2 1 35 35 H 1.09005 * 110.80859 * 278.22519 * 3 2 1 36 36 H 1.08997 * 110.71925 * 204.22328 * 4 3 2 37 37 H 1.09004 * 110.87425 * 81.01776 * 4 3 2 38 38 H 1.09001 * 110.31480 * 263.04371 * 5 4 3 39 39 H 1.09001 * 110.30806 * 140.86856 * 5 4 3 40 40 H 1.08005 * 127.24825 * 359.97438 * 9 8 6 41 41 H 0.97005 * 119.99939 * 355.12819 * 13 11 10 42 42 H 1.08000 * 120.59943 * 359.97438 * 15 14 13 43 43 H 0.97000 * 119.99447 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.49465 * 179.71977 * 25 16 15 45 45 H 1.08002 * 119.44289 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2105 0.5227 5 6 3.2983 0.1053 1.5930 6 6 1.9990 -0.6354 1.2259 7 1 1.2771 -0.5432 2.0373 8 6 2.2937 -2.0899 0.9640 9 6 1.8509 -3.1424 1.6909 10 6 2.3919 -4.2898 1.0635 11 6 2.2028 -5.6927 1.4839 12 8 1.5242 -5.9487 2.4595 13 7 2.7819 -6.6894 0.7855 14 6 2.6884 -8.0040 1.2390 15 6 3.3717 -9.0085 0.5714 16 6 3.2703 -10.3297 1.0475 17 6 3.9527 -11.3904 0.4049 18 1 3.5924 -12.4036 0.5054 19 6 5.0947 -11.1261 -0.3610 20 7 5.7212 -9.9862 -0.2285 21 14 5.7230 -12.4020 -1.5721 22 1 4.6717 -12.6860 -2.5818 23 1 6.9358 -11.8826 -2.2537 24 1 6.0606 -13.6514 -0.8441 25 6 2.4630 -10.5658 2.1814 26 6 1.8178 -9.5049 2.7738 27 7 1.9434 -8.2786 2.2996 28 7 3.0939 -3.8681 0.0305 29 7 3.0491 -2.5861 -0.0393 30 1 3.4939 -2.0515 -0.7155 31 1 -0.3633 0.5538 0.8658 32 1 -0.3633 0.4729 -0.9123 33 1 -0.3634 -1.0266 0.0467 34 1 1.4238 2.0204 0.6729 35 1 2.0040 1.8004 -1.0085 36 1 3.8123 2.1350 0.9715 37 1 4.1140 0.8846 -0.2773 38 1 3.2137 0.5484 2.5853 39 1 4.1470 -0.5776 1.5539 40 1 1.2213 -3.1126 2.5680 41 1 3.2638 -6.4917 -0.0329 42 1 3.9742 -8.7811 -0.2956 43 1 6.5121 -9.8030 -0.7594 44 1 2.3532 -11.5645 2.5776 45 1 1.1981 -9.6777 3.6413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897008403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:19 Heat of formation + Delta-G solvation = 62.812045 kcal Electronic energy + Delta-G solvation = -28340.786381 eV Core-core repulsion = 24358.890522 eV Total energy + Delta-G solvation = -3981.895859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.78245 -41.12933 -39.88510 -39.38168 -36.15729 -35.52474 -33.29682 -32.92795 -32.78956 -32.42801 -30.42165 -28.80213 -27.91784 -26.53373 -25.66799 -23.85042 -23.18809 -22.52410 -22.11340 -21.83593 -20.86730 -19.48477 -18.69776 -18.36268 -17.48643 -17.01247 -16.94696 -16.76780 -16.15280 -16.06653 -15.78575 -15.73037 -15.37690 -15.27956 -14.67916 -14.61616 -14.57871 -14.34792 -14.19529 -14.10529 -13.39428 -13.19894 -12.92259 -12.69359 -12.64365 -12.50684 -12.39076 -12.10534 -12.05316 -11.96457 -11.93349 -11.55514 -11.53914 -11.30917 -11.14898 -10.43793 -10.04874 -9.96331 -9.64826 -9.57155 -8.88476 -8.64856 -6.56507 0.34221 0.90355 1.00361 1.12960 1.40914 1.52792 1.60354 1.81309 2.17711 2.20232 2.38245 2.82270 2.90992 3.29660 3.54988 3.62372 3.74851 3.85861 3.98814 4.06983 4.23306 4.36791 4.43700 4.50922 4.54234 4.58996 4.74489 4.76705 4.80837 4.82017 4.92437 4.93033 5.01493 5.05947 5.06610 5.14782 5.21544 5.24611 5.25188 5.47956 5.61417 5.79405 5.88897 5.94323 6.05144 6.15411 6.41935 6.54759 6.77978 6.81946 6.85344 7.20603 7.80708 8.26241 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.002216 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.557283 B =12634.347649 C =13635.868597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.035 3.965 4 C -0.121 4.121 5 C -0.127 4.127 6 C 0.134 3.866 7 H 0.090 0.910 8 C 0.057 3.943 9 C -0.192 4.192 10 C -0.030 4.030 11 C 0.586 3.414 12 O -0.512 6.512 13 N -0.642 5.642 14 C 0.333 3.667 15 C -0.260 4.260 16 C 0.114 3.886 17 C -0.483 4.483 18 H 0.087 0.913 19 C 0.038 3.962 20 N -0.812 5.812 21 Si 0.989 3.011 22 H -0.259 1.259 23 H -0.266 1.266 24 H -0.257 1.257 25 C -0.296 4.296 26 C 0.115 3.885 27 N -0.580 5.580 28 N -0.266 5.266 29 N -0.345 5.345 30 H 0.459 0.541 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.163 0.837 41 H 0.422 0.578 42 H 0.122 0.878 43 H 0.293 0.707 44 H 0.119 0.881 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 25.031 -3.470 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.258 5.258 3 C -0.092 4.092 4 C -0.158 4.158 5 C -0.166 4.166 6 C 0.024 3.976 7 H 0.107 0.893 8 C -0.071 4.071 9 C -0.221 4.221 10 C -0.190 4.190 11 C 0.372 3.628 12 O -0.382 6.382 13 N -0.288 5.288 14 C 0.108 3.892 15 C -0.286 4.286 16 C 0.106 3.894 17 C -0.513 4.513 18 H 0.105 0.895 19 C -0.180 4.180 20 N -0.437 5.437 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.191 1.191 24 H -0.181 1.181 25 C -0.320 4.320 26 C -0.039 4.039 27 N -0.300 5.300 28 N -0.104 5.104 29 N -0.061 5.061 30 H 0.307 0.693 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.180 0.820 41 H 0.259 0.741 42 H 0.140 0.860 43 H 0.103 0.897 44 H 0.137 0.863 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.118 25.065 -3.724 25.428 hybrid contribution 0.357 -0.559 -0.123 0.675 sum -1.761 24.505 -3.847 24.868 Atomic orbital electron populations 1.22526 0.86708 1.01919 1.02102 1.64505 1.09316 1.16480 1.35466 1.23337 0.95171 0.88281 1.02391 1.22540 0.96387 0.98883 0.98038 1.22531 0.95307 0.97773 1.00941 1.20963 0.98460 0.85404 0.92803 0.89252 1.21340 0.97756 0.96576 0.91401 1.21609 1.06779 0.89257 1.04421 1.21614 1.05312 0.93971 0.98058 1.17491 0.79305 0.83334 0.82719 1.90821 1.37412 1.83414 1.26591 1.43269 1.53884 1.04073 1.27532 1.18387 0.94053 0.84228 0.92553 1.21516 1.08781 0.93163 1.05096 1.18005 0.89166 0.92728 0.89506 1.19859 1.09269 0.95069 1.27101 0.89456 1.26890 0.95467 0.98481 0.97151 1.69829 1.15319 1.24959 1.33595 0.85143 0.78082 0.78120 0.77732 1.18368 1.19065 1.18143 1.22083 1.09312 0.99722 1.00905 1.22266 0.96465 0.87170 0.97994 1.67342 1.23844 1.23349 1.15441 1.73544 1.21052 0.95672 1.20180 1.43177 1.36437 1.03090 1.23357 0.69344 0.93849 0.90092 0.92619 0.92341 0.88838 0.88923 0.90525 0.89070 0.91417 0.81957 0.74089 0.86047 0.89660 0.86254 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 127.69 1.20 1.39 16 2 N -0.53 -6.52 5.17 -888.43 -4.59 -11.11 16 3 C 0.04 0.26 6.56 86.65 0.57 0.83 16 4 C -0.12 -0.80 7.06 31.80 0.22 -0.57 16 5 C -0.13 -1.27 6.56 31.47 0.21 -1.06 16 6 C 0.13 1.83 2.95 44.31 0.13 1.96 16 7 H 0.09 1.15 7.73 -2.39 -0.02 1.14 16 8 C 0.06 1.21 5.86 41.40 0.24 1.45 16 9 C -0.19 -5.47 10.72 22.41 0.24 -5.23 16 10 C -0.03 -1.07 7.13 42.45 0.30 -0.77 16 11 C 0.59 26.08 7.78 86.73 0.68 26.75 16 12 O -0.51 -26.10 15.18 -3.92 -0.06 -26.16 16 13 N -0.64 -29.35 5.38 -311.42 -1.68 -31.03 16 14 C 0.33 17.69 7.41 132.78 0.98 18.68 16 15 C -0.26 -14.23 8.62 22.99 0.20 -14.03 16 16 C 0.11 6.33 5.60 -21.11 -0.12 6.21 16 17 C -0.48 -25.59 9.12 23.52 0.21 -25.37 16 18 H 0.09 4.38 7.90 -2.91 -0.02 4.36 16 19 C 0.04 1.84 5.20 85.29 0.44 2.28 16 20 N -0.81 -41.36 10.93 21.84 0.24 -41.12 16 21 Si 0.99 36.78 29.59 68.60 2.03 38.81 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 24 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 25 C -0.30 -15.17 9.90 22.84 0.23 -14.94 16 26 C 0.11 5.75 11.15 84.50 0.94 6.70 16 27 N -0.58 -31.61 7.85 -193.57 -1.52 -33.13 16 28 N -0.27 -8.02 11.93 -48.19 -0.57 -8.59 16 29 N -0.34 -7.47 6.83 -47.93 -0.33 -7.80 16 30 H 0.46 6.98 8.96 -219.99 -1.97 5.01 16 31 H 0.04 0.42 8.01 -2.38 -0.02 0.40 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.36 7.96 -2.39 -0.02 0.34 16 35 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.83 7.68 -2.39 -0.02 0.81 16 40 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.42 17.20 8.43 -92.70 -0.78 16.42 16 42 H 0.12 6.65 6.21 -2.91 -0.02 6.63 16 43 H 0.29 13.37 8.29 -92.71 -0.77 12.60 16 44 H 0.12 5.51 8.06 -2.91 -0.02 5.48 16 45 H 0.15 6.54 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -72.44 379.38 -1.50 -73.95 By element: Atomic # 1 Polarization: 43.61 SS G_CDS: -1.70 Total: 41.90 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 6.68 Total: 4.28 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -8.45 Total: -132.78 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Total: -72.44 -1.50 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897008403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.759 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds