Wall clock time and date at job start Wed Apr 1 2020 01:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47847 * 110.99808 * 2 1 4 4 C 1.54903 * 104.79638 * 146.36510 * 3 2 1 5 5 C 1.55142 * 101.65115 * 322.92551 * 4 3 2 6 6 C 1.47445 * 110.99830 * 120.84088 * 2 1 3 7 7 H 1.08995 * 109.88497 * 117.18172 * 6 2 1 8 8 C 1.50694 * 109.89179 * 356.14936 * 6 2 1 9 9 C 1.35361 * 126.38252 * 117.33519 * 8 6 2 10 10 C 1.41522 * 105.50305 * 180.02562 * 9 8 6 11 11 C 1.47661 * 126.52362 * 180.02562 * 10 9 8 12 12 O 1.21569 * 119.99785 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00329 * 180.02562 * 11 10 9 14 14 C 1.39180 * 120.00330 * 185.04829 * 13 11 10 15 15 C 1.39697 * 119.57919 * 174.52476 * 14 13 11 16 16 C 1.38645 * 119.48975 * 179.76682 * 15 14 13 17 17 C 1.38351 * 118.67625 * 0.49400 * 16 15 14 18 18 C 1.40585 * 119.13211 * 359.74778 * 17 16 15 19 19 C 1.41326 * 119.78245 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00537 * 0.02888 * 19 18 17 21 21 C 1.40034 * 119.99784 * 180.02562 * 19 18 17 22 22 N 1.30745 * 119.99729 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00068 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47155 * 60.00555 * 23 21 19 25 25 H 1.48500 * 109.46982 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47189 * 299.99998 * 23 21 19 27 27 N 1.31925 * 119.57224 * 354.78914 * 14 13 11 28 28 N 1.31832 * 106.95719 * 0.02562 * 10 9 8 29 29 N 1.28468 * 110.06997 * 0.02562 * 28 10 9 30 30 H 0.97008 * 124.88060 * 179.73573 * 29 28 10 31 31 H 1.08996 * 109.47283 * 306.05659 * 1 2 3 32 32 H 1.08997 * 109.47466 * 66.05989 * 1 2 3 33 33 H 1.09004 * 109.47143 * 186.05815 * 1 2 3 34 34 H 1.09001 * 110.37146 * 265.19248 * 3 2 1 35 35 H 1.09002 * 110.37520 * 27.41794 * 3 2 1 36 36 H 1.08997 * 110.99296 * 81.02038 * 4 3 2 37 37 H 1.08997 * 110.98918 * 204.80437 * 4 3 2 38 38 H 1.09003 * 110.70863 * 277.27139 * 5 4 3 39 39 H 1.09008 * 110.70607 * 154.03703 * 5 4 3 40 40 H 1.07997 * 127.24792 * 0.04306 * 9 8 6 41 41 H 0.97002 * 119.99876 * 5.04488 * 13 11 10 42 42 H 1.07998 * 120.25023 * 359.97438 * 15 14 13 43 43 H 1.08006 * 120.66231 * 180.26227 * 16 15 14 44 44 H 1.07996 * 120.43642 * 179.76927 * 17 16 15 45 45 H 0.97005 * 119.99961 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9158 0.2823 1.9315 6 6 1.9974 -0.7057 1.1819 7 1 2.5673 -1.5799 0.8676 8 6 0.8611 -1.1291 2.0767 9 6 0.5223 -2.3998 2.3973 10 6 -0.5984 -2.2876 3.2542 11 6 -1.3417 -3.4000 3.8791 12 8 -1.0023 -4.5491 3.6735 13 7 -2.3962 -3.1415 4.6775 14 6 -3.0316 -4.1814 5.3499 15 6 -4.0487 -3.8926 6.2629 16 6 -4.6837 -4.9302 6.9280 17 6 -4.2798 -6.2284 6.6722 18 6 -3.2465 -6.4538 5.7459 19 6 -2.8227 -7.7744 5.4745 20 1 -3.2925 -8.6066 5.9777 21 6 -1.7935 -8.0040 4.5531 22 7 -1.2244 -6.9966 3.9443 23 14 -1.2337 -9.7495 4.1939 24 1 -2.3750 -10.5353 3.6599 25 1 -0.1390 -9.7217 3.1908 26 1 -0.7417 -10.3791 5.4456 27 7 -2.6619 -5.4269 5.1206 28 7 -0.8526 -1.0010 3.3884 29 7 -0.0099 -0.3117 2.7064 30 1 -0.0024 0.6567 2.6496 31 1 -0.3633 0.6048 0.8308 32 1 -0.3634 0.4170 -0.9392 33 1 -0.3634 -1.0220 0.1085 34 1 2.2147 1.7038 -1.0182 35 1 1.2880 2.0596 0.4705 36 1 4.1301 0.9283 0.2243 37 1 3.5497 2.2722 1.2634 38 1 2.3743 0.7748 2.7392 39 1 3.8000 -0.2278 2.3138 40 1 1.0056 -3.3079 2.0687 41 1 -2.7124 -2.2306 4.7835 42 1 -4.3404 -2.8691 6.4466 43 1 -5.4753 -4.7287 7.6347 44 1 -4.7523 -7.0579 7.1771 45 1 -0.5111 -7.1556 3.3063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899225273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:23 Heat of formation + Delta-G solvation = 120.025245 kcal Electronic energy + Delta-G solvation = -29247.670934 eV Core-core repulsion = 25268.256026 eV Total energy + Delta-G solvation = -3979.414908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86863 -39.40083 -38.92882 -37.26201 -34.07311 -32.97974 -32.60508 -31.88896 -31.73296 -30.25173 -29.01825 -27.99999 -26.04791 -25.56848 -24.02432 -22.23256 -21.69951 -21.51698 -20.93755 -20.74872 -19.01460 -17.67466 -17.58117 -16.57352 -16.35490 -16.04151 -15.63449 -15.41403 -14.64423 -14.42837 -14.38022 -14.06591 -13.93099 -13.59066 -13.54690 -13.46365 -13.18802 -12.98787 -12.74504 -12.02047 -11.98253 -11.87227 -11.84163 -11.68216 -11.52876 -11.25383 -11.09906 -10.92581 -10.76179 -10.61288 -10.42146 -9.91491 -9.66344 -9.22959 -9.17238 -9.13706 -8.94636 -8.63711 -7.91813 -7.19873 -6.90924 -6.09121 -4.35010 1.75194 2.20906 2.78743 2.92964 3.19476 3.20668 3.22436 3.32696 3.62658 3.81222 4.10836 4.12131 4.21065 4.25040 4.30433 4.64053 4.71454 4.91846 4.94079 4.99082 5.06546 5.11854 5.21856 5.37667 5.42745 5.51085 5.60938 5.68149 5.70874 5.75990 5.98068 6.08921 6.16711 6.46598 6.49955 6.55238 6.56558 6.73235 6.88313 6.90026 6.95248 7.28362 7.60192 7.67103 7.86140 7.89487 8.13582 8.25703 8.52223 8.78969 9.09221 9.27995 10.28828 10.53453 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.002834 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.433627 B = 9876.706827 C =11288.511926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.130 4.130 5 C -0.138 4.138 6 C 0.142 3.858 7 H 0.115 0.885 8 C -0.006 4.006 9 C -0.162 4.162 10 C 0.009 3.991 11 C 0.556 3.444 12 O -0.396 6.396 13 N -0.654 5.654 14 C 0.373 3.627 15 C -0.355 4.355 16 C -0.036 4.036 17 C -0.305 4.305 18 C 0.271 3.729 19 C -0.425 4.425 20 H 0.082 0.918 21 C 0.058 3.942 22 N -0.657 5.657 23 Si 0.897 3.103 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.268 1.268 27 N -0.474 5.474 28 N -0.265 5.265 29 N -0.387 5.387 30 H 0.436 0.564 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.163 0.837 41 H 0.404 0.596 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 17.704 -7.986 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.246 5.246 3 C -0.092 4.092 4 C -0.168 4.168 5 C -0.177 4.177 6 C 0.033 3.967 7 H 0.133 0.867 8 C -0.132 4.132 9 C -0.190 4.190 10 C -0.153 4.153 11 C 0.335 3.665 12 O -0.256 6.256 13 N -0.300 5.300 14 C 0.134 3.866 15 C -0.380 4.380 16 C -0.061 4.061 17 C -0.328 4.328 18 C 0.146 3.854 19 C -0.456 4.456 20 H 0.100 0.900 21 C -0.171 4.171 22 N -0.275 5.275 23 Si 0.721 3.279 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.192 1.192 27 N -0.193 5.193 28 N -0.101 5.101 29 N -0.102 5.102 30 H 0.281 0.719 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.181 0.819 41 H 0.239 0.761 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.634 17.110 -8.875 21.549 hybrid contribution -0.471 0.478 0.878 1.105 sum 9.163 17.588 -7.997 21.384 Atomic orbital electron populations 1.22730 0.87087 1.02733 1.00580 1.63861 1.08517 1.14167 1.38057 1.23184 0.95650 0.89323 1.01080 1.22729 0.97841 0.99383 0.96803 1.22899 1.00164 0.96819 0.97818 1.21185 0.90735 0.98509 0.86283 0.86707 1.21503 0.97926 0.91173 1.02633 1.21572 0.98708 0.96800 1.01944 1.22569 0.99361 0.90573 1.02797 1.17237 0.81286 0.87182 0.80775 1.91257 1.62904 1.17339 1.54105 1.43189 1.31205 1.09557 1.46074 1.18583 0.89656 0.88674 0.89640 1.20492 1.08551 0.97862 1.11134 1.20557 0.96406 0.92890 0.96205 1.21619 1.06702 0.95458 1.09033 1.18378 0.87571 0.92174 0.87284 1.19538 1.14780 0.91683 1.19569 0.90006 1.26175 0.96717 0.98044 0.96182 1.70298 1.13581 1.30003 1.13655 0.86571 0.78896 0.83530 0.78869 1.19225 1.20370 1.19236 1.68701 1.28660 0.95174 1.26804 1.73600 1.15437 1.05284 1.15752 1.43463 1.22090 1.09409 1.35224 0.71923 0.95835 0.91133 0.90328 0.89696 0.93691 0.90055 0.90506 0.91579 0.89582 0.81922 0.76138 0.89044 0.88616 0.88560 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.30 60.06 0.50 0.65 16 2 N -0.52 -4.47 5.44 -232.95 -1.27 -5.74 16 3 C 0.04 0.22 6.73 -2.30 -0.02 0.21 16 4 C -0.13 -0.70 7.08 -24.59 -0.17 -0.87 16 5 C -0.14 -0.93 6.46 -24.91 -0.16 -1.09 16 6 C 0.14 1.25 3.90 -67.88 -0.26 0.98 16 7 H 0.12 1.02 8.12 -51.93 -0.42 0.60 16 8 C -0.01 -0.07 3.67 -82.21 -0.30 -0.37 16 9 C -0.16 -2.41 10.72 -39.36 -0.42 -2.83 16 10 C 0.01 0.16 7.13 -82.77 -0.59 -0.43 16 11 C 0.56 12.21 7.78 -12.42 -0.10 12.12 16 12 O -0.40 -10.29 12.68 5.30 0.07 -10.22 16 13 N -0.65 -14.10 5.38 -12.31 -0.07 -14.16 16 14 C 0.37 9.49 7.43 -155.04 -1.15 8.34 16 15 C -0.35 -8.28 9.96 -38.89 -0.39 -8.67 16 16 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 17 C -0.30 -7.83 9.83 -38.66 -0.38 -8.21 16 18 C 0.27 7.76 6.55 -85.00 -0.56 7.20 16 19 C -0.43 -11.84 9.14 -37.74 -0.34 -12.18 16 20 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 21 C 0.06 1.54 5.50 -17.34 -0.10 1.45 16 22 N -0.66 -18.35 8.98 55.55 0.50 -17.86 16 23 Si 0.90 19.42 29.56 -169.99 -5.02 14.40 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 N -0.47 -13.64 5.73 -10.27 -0.06 -13.70 16 28 N -0.26 -3.87 11.93 33.42 0.40 -3.47 16 29 N -0.39 -4.25 5.13 33.50 0.17 -4.07 16 30 H 0.44 3.46 7.85 -190.43 -1.50 1.96 16 31 H 0.02 0.19 5.39 -51.93 -0.28 -0.09 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.90 7.14 -51.93 -0.37 0.52 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.26 7.68 -51.93 -0.40 -0.14 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.45 7.58 -51.93 -0.39 0.06 16 39 H 0.09 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 41 H 0.40 7.33 8.43 -40.82 -0.34 6.99 16 42 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 44 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -33.31 367.75 -11.64 -44.95 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.06 Total: 9.31 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -4.84 Total: -4.97 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.32 Total: -59.00 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.31 -11.64 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899225273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.971 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds