Wall clock time and date at job start Wed Apr 1 2020 01:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47847 * 110.99808 * 2 1 4 4 C 1.54903 * 104.79638 * 146.36510 * 3 2 1 5 5 C 1.55142 * 101.65115 * 322.92551 * 4 3 2 6 6 C 1.47445 * 110.99830 * 120.84088 * 2 1 3 7 7 H 1.08995 * 109.88497 * 117.18172 * 6 2 1 8 8 C 1.50694 * 109.89179 * 356.14936 * 6 2 1 9 9 C 1.35361 * 126.38252 * 117.33519 * 8 6 2 10 10 C 1.41522 * 105.50305 * 180.02562 * 9 8 6 11 11 C 1.47661 * 126.52362 * 180.02562 * 10 9 8 12 12 O 1.21569 * 119.99785 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00329 * 180.02562 * 11 10 9 14 14 C 1.39180 * 120.00330 * 185.04829 * 13 11 10 15 15 C 1.39697 * 119.57919 * 174.52476 * 14 13 11 16 16 C 1.38645 * 119.48975 * 179.76682 * 15 14 13 17 17 C 1.38351 * 118.67625 * 0.49400 * 16 15 14 18 18 C 1.40585 * 119.13211 * 359.74778 * 17 16 15 19 19 C 1.41326 * 119.78245 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00537 * 0.02888 * 19 18 17 21 21 C 1.40034 * 119.99784 * 180.02562 * 19 18 17 22 22 N 1.30745 * 119.99729 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00068 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47155 * 60.00555 * 23 21 19 25 25 H 1.48500 * 109.46982 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47189 * 299.99998 * 23 21 19 27 27 N 1.31925 * 119.57224 * 354.78914 * 14 13 11 28 28 N 1.31832 * 106.95719 * 0.02562 * 10 9 8 29 29 N 1.28468 * 110.06997 * 0.02562 * 28 10 9 30 30 H 0.97008 * 124.88060 * 179.73573 * 29 28 10 31 31 H 1.08996 * 109.47283 * 306.05659 * 1 2 3 32 32 H 1.08997 * 109.47466 * 66.05989 * 1 2 3 33 33 H 1.09004 * 109.47143 * 186.05815 * 1 2 3 34 34 H 1.09001 * 110.37146 * 265.19248 * 3 2 1 35 35 H 1.09002 * 110.37520 * 27.41794 * 3 2 1 36 36 H 1.08997 * 110.99296 * 81.02038 * 4 3 2 37 37 H 1.08997 * 110.98918 * 204.80437 * 4 3 2 38 38 H 1.09003 * 110.70863 * 277.27139 * 5 4 3 39 39 H 1.09008 * 110.70607 * 154.03703 * 5 4 3 40 40 H 1.07997 * 127.24792 * 0.04306 * 9 8 6 41 41 H 0.97002 * 119.99876 * 5.04488 * 13 11 10 42 42 H 1.07998 * 120.25023 * 359.97438 * 15 14 13 43 43 H 1.08006 * 120.66231 * 180.26227 * 16 15 14 44 44 H 1.07996 * 120.43642 * 179.76927 * 17 16 15 45 45 H 0.97005 * 119.99961 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9158 0.2823 1.9315 6 6 1.9974 -0.7057 1.1819 7 1 2.5673 -1.5799 0.8676 8 6 0.8611 -1.1291 2.0767 9 6 0.5223 -2.3998 2.3973 10 6 -0.5984 -2.2876 3.2542 11 6 -1.3417 -3.4000 3.8791 12 8 -1.0023 -4.5491 3.6735 13 7 -2.3962 -3.1415 4.6775 14 6 -3.0316 -4.1814 5.3499 15 6 -4.0487 -3.8926 6.2629 16 6 -4.6837 -4.9302 6.9280 17 6 -4.2798 -6.2284 6.6722 18 6 -3.2465 -6.4538 5.7459 19 6 -2.8227 -7.7744 5.4745 20 1 -3.2925 -8.6066 5.9777 21 6 -1.7935 -8.0040 4.5531 22 7 -1.2244 -6.9966 3.9443 23 14 -1.2337 -9.7495 4.1939 24 1 -2.3750 -10.5353 3.6599 25 1 -0.1390 -9.7217 3.1908 26 1 -0.7417 -10.3791 5.4456 27 7 -2.6619 -5.4269 5.1206 28 7 -0.8526 -1.0010 3.3884 29 7 -0.0099 -0.3117 2.7064 30 1 -0.0024 0.6567 2.6496 31 1 -0.3633 0.6048 0.8308 32 1 -0.3634 0.4170 -0.9392 33 1 -0.3634 -1.0220 0.1085 34 1 2.2147 1.7038 -1.0182 35 1 1.2880 2.0596 0.4705 36 1 4.1301 0.9283 0.2243 37 1 3.5497 2.2722 1.2634 38 1 2.3743 0.7748 2.7392 39 1 3.8000 -0.2278 2.3138 40 1 1.0056 -3.3079 2.0687 41 1 -2.7124 -2.2306 4.7835 42 1 -4.3404 -2.8691 6.4466 43 1 -5.4753 -4.7287 7.6347 44 1 -4.7523 -7.0579 7.1771 45 1 -0.5111 -7.1556 3.3063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899225273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:22 Heat of formation + Delta-G solvation = 96.795977 kcal Electronic energy + Delta-G solvation = -29248.678231 eV Core-core repulsion = 25268.256026 eV Total energy + Delta-G solvation = -3980.422205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.98242 -40.89785 -39.95314 -39.10400 -35.95913 -34.87089 -33.29932 -32.91086 -32.81557 -32.20744 -30.87268 -28.84614 -27.53839 -26.71508 -25.56209 -23.53282 -23.12949 -22.59516 -22.14768 -21.79414 -20.65627 -19.49430 -18.57843 -17.94866 -17.70034 -17.26561 -16.70795 -16.46569 -16.27092 -16.21244 -15.68072 -15.51514 -15.14176 -15.01874 -14.79355 -14.58992 -14.47547 -14.22467 -13.89051 -13.71562 -13.57920 -12.85340 -12.73450 -12.68530 -12.56536 -12.53187 -12.31683 -12.29563 -12.07255 -11.98642 -11.78453 -11.64837 -11.52677 -10.97051 -10.87114 -10.37027 -10.19193 -9.90271 -9.38272 -9.14864 -8.84093 -8.03689 -6.40989 0.48049 0.90616 1.11977 1.32149 1.41852 1.54160 1.56992 1.77038 2.27697 2.28943 2.58020 2.97523 3.03555 3.28180 3.44052 3.58847 3.72907 4.04702 4.07566 4.13277 4.27094 4.33072 4.38331 4.42616 4.48366 4.58015 4.63153 4.74851 4.88270 4.89047 4.91519 4.96337 4.96909 5.04427 5.04970 5.13964 5.24993 5.28155 5.29779 5.68191 5.81785 5.83063 5.90369 5.92589 6.01363 6.15140 6.35253 6.62671 6.77708 6.88687 7.07378 7.56319 8.32826 8.58671 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.002834 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.433627 B = 9876.706827 C =11288.511926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.032 3.968 4 C -0.121 4.121 5 C -0.136 4.136 6 C 0.141 3.859 7 H 0.112 0.888 8 C 0.027 3.973 9 C -0.187 4.187 10 C -0.018 4.018 11 C 0.551 3.449 12 O -0.444 6.444 13 N -0.645 5.645 14 C 0.349 3.651 15 C -0.346 4.346 16 C -0.033 4.033 17 C -0.326 4.326 18 C 0.235 3.765 19 C -0.463 4.463 20 H 0.088 0.912 21 C 0.010 3.990 22 N -0.693 5.693 23 Si 0.978 3.022 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.260 1.260 27 N -0.508 5.508 28 N -0.260 5.260 29 N -0.361 5.361 30 H 0.455 0.545 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.154 0.846 41 H 0.419 0.581 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.108 0.892 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.669 20.285 -8.200 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.255 5.255 3 C -0.095 4.095 4 C -0.159 4.159 5 C -0.174 4.174 6 C 0.032 3.968 7 H 0.130 0.870 8 C -0.100 4.100 9 C -0.215 4.215 10 C -0.178 4.178 11 C 0.333 3.667 12 O -0.308 6.308 13 N -0.293 5.293 14 C 0.111 3.889 15 C -0.372 4.372 16 C -0.057 4.057 17 C -0.349 4.349 18 C 0.110 3.890 19 C -0.494 4.494 20 H 0.106 0.894 21 C -0.216 4.216 22 N -0.312 5.312 23 Si 0.799 3.201 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.185 1.185 27 N -0.228 5.228 28 N -0.098 5.098 29 N -0.079 5.079 30 H 0.303 0.697 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.171 0.829 41 H 0.257 0.743 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.126 0.874 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.235 19.769 -9.076 24.041 hybrid contribution -0.709 -0.070 0.933 1.174 sum 9.526 19.699 -8.144 23.348 Atomic orbital electron populations 1.22678 0.87581 1.01147 1.01577 1.63881 1.08109 1.15924 1.37566 1.23300 0.96260 0.87970 1.01960 1.22719 0.97350 0.99787 0.96018 1.22907 0.99817 0.96597 0.98124 1.21326 0.89909 0.99358 0.86231 0.86977 1.21726 0.97491 0.89732 1.01052 1.21600 0.98863 0.98218 1.02862 1.21903 1.00580 0.90481 1.04849 1.17797 0.80986 0.87887 0.80061 1.91238 1.64142 1.19669 1.55759 1.43168 1.31026 1.09523 1.45598 1.19088 0.90554 0.88744 0.90522 1.20945 1.06982 0.99834 1.09410 1.21031 0.96760 0.91763 0.96176 1.21822 1.06685 0.97229 1.09174 1.18909 0.88839 0.92856 0.88443 1.19894 1.16332 0.92023 1.21169 0.89389 1.27076 0.96314 1.02701 0.95485 1.70506 1.14036 1.32374 1.14247 0.85344 0.78451 0.77537 0.78814 1.18454 1.19783 1.18456 1.68663 1.29831 0.96448 1.27880 1.73503 1.16032 1.04172 1.16084 1.43500 1.20727 1.10209 1.33433 0.69670 0.95008 0.90062 0.93112 0.88988 0.92514 0.89807 0.88618 0.91214 0.89026 0.82854 0.74329 0.85356 0.84332 0.87436 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.30 127.69 1.06 1.37 16 2 N -0.53 -7.98 5.44 -890.93 -4.85 -12.83 16 3 C 0.03 0.30 6.73 86.77 0.58 0.88 16 4 C -0.12 -0.88 7.08 31.98 0.23 -0.66 16 5 C -0.14 -1.45 6.46 31.78 0.21 -1.24 16 6 C 0.14 2.24 3.90 44.51 0.17 2.42 16 7 H 0.11 1.90 8.12 -2.39 -0.02 1.88 16 8 C 0.03 0.59 3.67 41.40 0.15 0.75 16 9 C -0.19 -5.77 10.72 22.42 0.24 -5.53 16 10 C -0.02 -0.64 7.13 42.44 0.30 -0.34 16 11 C 0.55 25.39 7.78 86.73 0.67 26.06 16 12 O -0.44 -24.68 12.68 -3.93 -0.05 -24.73 16 13 N -0.65 -28.46 5.38 -311.14 -1.67 -30.13 16 14 C 0.35 18.13 7.43 133.28 0.99 19.12 16 15 C -0.35 -15.76 9.96 22.72 0.23 -15.53 16 16 C -0.03 -1.50 10.15 22.39 0.23 -1.28 16 17 C -0.33 -16.95 9.83 22.87 0.22 -16.72 16 18 C 0.23 14.00 6.55 40.19 0.26 14.26 16 19 C -0.46 -26.95 9.14 23.47 0.21 -26.73 16 20 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 21 C 0.01 0.54 5.50 85.29 0.47 1.01 16 22 N -0.69 -40.92 8.98 21.84 0.20 -40.72 16 23 Si 0.98 41.43 29.56 68.60 2.03 43.45 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 27 N -0.51 -30.53 5.73 -186.40 -1.07 -31.60 16 28 N -0.26 -7.41 11.93 -48.19 -0.57 -7.98 16 29 N -0.36 -7.28 5.13 -47.93 -0.25 -7.53 16 30 H 0.45 5.80 7.85 -219.98 -1.73 4.07 16 31 H 0.03 0.45 5.39 -2.39 -0.01 0.43 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.14 7.14 -2.38 -0.02 1.12 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.42 7.68 -2.39 -0.02 0.40 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.07 0.71 7.58 -2.39 -0.02 0.69 16 39 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.15 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.42 15.14 8.43 -92.71 -0.78 14.35 16 42 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 44 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 45 H 0.27 15.10 8.29 -92.70 -0.77 14.33 16 Total: -1.00 -77.39 367.75 -1.46 -78.85 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -1.46 Total: 35.38 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 6.23 Total: -2.17 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -8.22 Total: -130.79 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -77.39 -1.46 -78.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899225273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.645 kcal (2) G-P(sol) polarization free energy of solvation -77.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds