Wall clock time and date at job start Wed Apr 1 2020 01:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48533 * 111.00210 * 2 1 4 4 C 1.54931 * 103.22653 * 159.71705 * 3 2 1 5 5 C 1.54592 * 102.92715 * 322.58848 * 4 3 2 6 6 C 1.47902 * 110.99919 * 117.39846 * 2 1 3 7 7 H 1.09001 * 110.08130 * 333.59399 * 6 2 1 8 8 C 1.50699 * 109.92342 * 94.80185 * 6 2 1 9 9 C 1.35352 * 126.38645 * 232.59228 * 8 6 2 10 10 C 1.41513 * 105.50371 * 180.25870 * 9 8 6 11 11 C 1.47670 * 126.52060 * 179.70115 * 10 9 8 12 12 O 1.21564 * 120.00010 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00139 * 179.97438 * 11 10 9 14 14 C 1.39172 * 120.00230 * 174.84561 * 13 11 10 15 15 C 1.39697 * 119.57814 * 185.32309 * 14 13 11 16 16 C 1.38645 * 119.49484 * 180.02562 * 15 14 13 17 17 C 1.38351 * 118.67036 * 359.97438 * 16 15 14 18 18 C 1.40576 * 119.13919 * 0.02562 * 17 16 15 19 19 C 1.41324 * 119.79349 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99956 * 0.02562 * 19 18 17 21 21 C 1.40027 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.30741 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00173 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47309 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47338 * 119.99803 * 23 21 19 26 26 H 1.48500 * 109.47219 * 239.99804 * 23 21 19 27 27 N 1.31922 * 119.57529 * 5.05303 * 14 13 11 28 28 N 1.31828 * 106.95959 * 359.57133 * 10 9 8 29 29 N 1.28467 * 110.06870 * 0.44260 * 28 10 9 30 30 H 0.96998 * 124.88527 * 179.69509 * 29 28 10 31 31 H 1.08998 * 109.47108 * 302.60564 * 1 2 3 32 32 H 1.09003 * 109.46676 * 62.60519 * 1 2 3 33 33 H 1.09001 * 109.47014 * 182.60414 * 1 2 3 34 34 H 1.09002 * 110.66281 * 41.28032 * 3 2 1 35 35 H 1.09000 * 110.80621 * 278.22590 * 3 2 1 36 36 H 1.09004 * 110.72013 * 204.22111 * 4 3 2 37 37 H 1.09002 * 110.87568 * 81.01814 * 4 3 2 38 38 H 1.09003 * 110.30547 * 263.04551 * 5 4 3 39 39 H 1.08999 * 110.31262 * 140.87414 * 5 4 3 40 40 H 1.08005 * 127.24717 * 0.02562 * 9 8 6 41 41 H 0.97005 * 119.99924 * 354.85345 * 13 11 10 42 42 H 1.07999 * 120.25489 * 359.97438 * 15 14 13 43 43 H 1.08006 * 120.66606 * 179.97438 * 16 15 14 44 44 H 1.08006 * 120.42964 * 179.97438 * 17 16 15 45 45 H 0.97006 * 120.00027 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2983 0.1053 1.5931 6 6 1.9991 -0.6354 1.2259 7 1 1.2771 -0.5432 2.0374 8 6 2.2938 -2.0899 0.9641 9 6 1.8510 -3.1424 1.6910 10 6 2.3923 -4.2897 1.0638 11 6 2.2047 -5.6925 1.4852 12 8 1.5277 -5.9484 2.4619 13 7 2.7839 -6.6891 0.7869 14 6 2.6970 -8.0009 1.2438 15 6 3.3930 -9.0113 0.5759 16 6 3.3047 -10.3175 1.0322 17 6 2.5242 -10.5810 2.1437 18 6 1.8480 -9.5208 2.7722 19 6 1.0474 -9.7743 3.9089 20 1 0.9569 -10.7799 4.2923 21 6 0.3714 -8.7216 4.5380 22 7 0.4813 -7.5042 4.0741 23 14 -0.6874 -9.0568 6.0400 24 1 -0.6462 -10.5061 6.3614 25 1 -0.1700 -8.2786 7.1940 26 1 -2.0882 -8.6523 5.7585 27 7 1.9625 -8.2733 2.3052 28 7 3.0936 -3.8681 0.0302 29 7 3.0489 -2.5861 -0.0395 30 1 3.4938 -2.0515 -0.7155 31 1 -0.3633 0.5538 0.8657 32 1 -0.3633 0.4729 -0.9125 33 1 -0.3633 -1.0266 0.0467 34 1 1.4237 2.0204 0.6729 35 1 2.0041 1.8004 -1.0084 36 1 3.8123 2.1352 0.9716 37 1 4.1141 0.8847 -0.2771 38 1 3.2136 0.5486 2.5853 39 1 4.1470 -0.5775 1.5541 40 1 1.2207 -3.1125 2.5675 41 1 3.2616 -6.4922 -0.0340 42 1 3.9947 -8.7768 -0.2898 43 1 3.8346 -11.1134 0.5300 44 1 2.4350 -11.5883 2.5231 45 1 0.0127 -6.7750 4.5098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899225275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:25 Heat of formation + Delta-G solvation = 108.274399 kcal Electronic energy + Delta-G solvation = -28981.811739 eV Core-core repulsion = 25001.887276 eV Total energy + Delta-G solvation = -3979.924463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.51027 -39.31132 -38.91615 -37.22010 -34.03057 -32.94559 -32.62384 -31.84970 -31.54320 -30.22242 -28.97173 -27.95433 -25.94660 -25.54013 -23.93146 -22.15223 -21.60509 -21.47160 -20.87642 -20.69910 -18.90519 -17.78900 -17.55421 -16.41737 -16.17589 -15.99708 -15.46284 -15.13742 -14.71683 -14.57521 -14.35734 -14.10358 -13.80479 -13.63350 -13.44978 -13.42316 -13.15098 -12.85569 -12.71143 -12.10312 -11.96598 -11.89395 -11.83462 -11.71400 -11.49327 -11.15163 -11.12476 -10.88248 -10.64142 -10.56077 -10.41003 -9.85889 -9.63943 -9.11290 -9.04914 -9.00144 -8.91042 -8.83829 -7.89131 -7.16596 -6.87180 -6.07090 -4.32696 1.92835 2.30902 2.93696 3.03509 3.22063 3.22125 3.25739 3.33447 3.54547 3.93479 4.12012 4.19223 4.21971 4.31840 4.50031 4.66880 4.79294 4.92898 5.01348 5.04428 5.06476 5.11259 5.28689 5.37603 5.44408 5.58793 5.59363 5.65294 5.70964 5.82674 5.99447 6.11676 6.19801 6.38389 6.54453 6.57585 6.61173 6.78158 6.91570 6.93750 7.15945 7.30623 7.63772 7.71006 7.88921 8.04890 8.19284 8.29770 8.56609 8.81938 9.11994 9.33735 10.31797 10.55391 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.002784 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.077339 B =10054.531402 C =11508.760501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.033 3.967 4 C -0.125 4.125 5 C -0.128 4.128 6 C 0.134 3.866 7 H 0.082 0.918 8 C 0.028 3.972 9 C -0.176 4.176 10 C 0.006 3.994 11 C 0.557 3.443 12 O -0.399 6.399 13 N -0.654 5.654 14 C 0.374 3.626 15 C -0.354 4.354 16 C -0.037 4.037 17 C -0.305 4.305 18 C 0.271 3.729 19 C -0.426 4.426 20 H 0.082 0.918 21 C 0.058 3.942 22 N -0.656 5.656 23 Si 0.896 3.104 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.276 1.276 27 N -0.474 5.474 28 N -0.268 5.268 29 N -0.370 5.370 30 H 0.441 0.559 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.405 0.595 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 20.759 -6.952 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.163 4.163 5 C -0.167 4.167 6 C 0.024 3.976 7 H 0.100 0.900 8 C -0.100 4.100 9 C -0.205 4.205 10 C -0.156 4.156 11 C 0.337 3.663 12 O -0.259 6.259 13 N -0.301 5.301 14 C 0.135 3.865 15 C -0.380 4.380 16 C -0.061 4.061 17 C -0.328 4.328 18 C 0.146 3.854 19 C -0.456 4.456 20 H 0.101 0.899 21 C -0.171 4.171 22 N -0.275 5.275 23 Si 0.720 3.280 24 H -0.187 1.187 25 H -0.201 1.201 26 H -0.201 1.201 27 N -0.193 5.193 28 N -0.104 5.104 29 N -0.083 5.083 30 H 0.285 0.715 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.176 0.824 41 H 0.239 0.761 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.757 20.808 -6.997 22.125 hybrid contribution -0.298 0.336 0.641 0.782 sum 2.459 21.143 -6.356 22.215 Atomic orbital electron populations 1.22532 0.86869 1.02843 1.01026 1.64563 1.09046 1.14851 1.36144 1.23269 0.95034 0.89600 1.01504 1.22526 0.96570 0.98754 0.98484 1.22525 0.96967 0.97603 0.99604 1.20846 0.97030 0.87644 0.92076 0.90015 1.20897 1.00389 0.95280 0.93400 1.21487 1.05892 0.89541 1.03566 1.22460 1.01632 0.96185 0.95316 1.17251 0.82332 0.81808 0.84951 1.91243 1.31687 1.81007 1.21975 1.43200 1.54925 1.05121 1.26817 1.18592 0.92793 0.82734 0.92380 1.20504 1.15573 0.93795 1.08102 1.20558 0.95921 0.94599 0.95000 1.21616 1.09521 0.99177 1.02528 1.18397 0.89709 0.85739 0.91582 1.19596 1.22706 0.95105 1.08225 0.89949 1.26179 0.97273 0.95264 0.98383 1.70329 1.26672 0.98850 1.31633 0.86467 0.80022 0.79626 0.81872 1.18666 1.20099 1.20109 1.68713 1.19251 1.20704 1.10672 1.73594 1.21848 0.93869 1.21122 1.43079 1.37754 1.04119 1.23374 0.71490 0.94949 0.91057 0.90749 0.93305 0.89698 0.90606 0.90697 0.90382 0.90498 0.82376 0.76088 0.89004 0.88622 0.88586 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.07 0.56 0.69 16 2 N -0.52 -4.22 5.17 -232.16 -1.20 -5.42 16 3 C 0.03 0.20 6.56 -1.90 -0.01 0.19 16 4 C -0.13 -0.68 7.06 -24.88 -0.18 -0.86 16 5 C -0.13 -0.91 6.56 -25.37 -0.17 -1.07 16 6 C 0.13 1.19 2.95 -67.79 -0.20 0.99 16 7 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 8 C 0.03 0.33 5.86 -82.21 -0.48 -0.15 16 9 C -0.18 -2.74 10.72 -39.36 -0.42 -3.16 16 10 C 0.01 0.10 7.13 -82.77 -0.59 -0.49 16 11 C 0.56 12.53 7.78 -12.41 -0.10 12.43 16 12 O -0.40 -10.52 12.68 5.31 0.07 -10.45 16 13 N -0.65 -14.40 5.38 -12.31 -0.07 -14.46 16 14 C 0.37 9.62 7.43 -155.05 -1.15 8.47 16 15 C -0.35 -8.36 9.95 -38.89 -0.39 -8.74 16 16 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 17 C -0.31 -7.90 9.83 -38.66 -0.38 -8.28 16 18 C 0.27 7.81 6.55 -85.00 -0.56 7.26 16 19 C -0.43 -11.93 9.14 -37.74 -0.34 -12.27 16 20 H 0.08 2.16 7.85 -52.48 -0.41 1.75 16 21 C 0.06 1.55 5.50 -17.35 -0.10 1.46 16 22 N -0.66 -18.47 8.98 55.55 0.50 -17.97 16 23 Si 0.90 19.51 29.56 -169.99 -5.02 14.49 16 24 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 N -0.47 -13.77 5.73 -10.27 -0.06 -13.82 16 28 N -0.27 -4.15 11.93 33.42 0.40 -3.76 16 29 N -0.37 -4.45 6.83 33.50 0.23 -4.22 16 30 H 0.44 3.98 8.96 -190.44 -1.71 2.28 16 31 H 0.03 0.22 8.01 -51.93 -0.42 -0.19 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.27 7.96 -51.93 -0.41 -0.14 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.61 7.68 -51.93 -0.40 0.21 16 40 H 0.16 2.41 8.06 -52.48 -0.42 1.99 16 41 H 0.40 7.54 8.43 -40.82 -0.34 7.19 16 42 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 44 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 45 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -33.90 376.14 -11.84 -45.74 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.45 Total: 9.03 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -4.90 Total: -4.81 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.20 Total: -59.66 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.90 -11.84 -45.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899225275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.013 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds