Wall clock time and date at job start Wed Apr 1 2020 01:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48533 * 111.00210 * 2 1 4 4 C 1.54931 * 103.22653 * 159.71705 * 3 2 1 5 5 C 1.54592 * 102.92715 * 322.58848 * 4 3 2 6 6 C 1.47902 * 110.99919 * 117.39846 * 2 1 3 7 7 H 1.09001 * 110.08130 * 333.59399 * 6 2 1 8 8 C 1.50699 * 109.92342 * 94.80185 * 6 2 1 9 9 C 1.35352 * 126.38645 * 232.59228 * 8 6 2 10 10 C 1.41513 * 105.50371 * 180.25870 * 9 8 6 11 11 C 1.47670 * 126.52060 * 179.70115 * 10 9 8 12 12 O 1.21564 * 120.00010 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00139 * 179.97438 * 11 10 9 14 14 C 1.39172 * 120.00230 * 174.84561 * 13 11 10 15 15 C 1.39697 * 119.57814 * 185.32309 * 14 13 11 16 16 C 1.38645 * 119.49484 * 180.02562 * 15 14 13 17 17 C 1.38351 * 118.67036 * 359.97438 * 16 15 14 18 18 C 1.40576 * 119.13919 * 0.02562 * 17 16 15 19 19 C 1.41324 * 119.79349 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99956 * 0.02562 * 19 18 17 21 21 C 1.40027 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.30741 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00173 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47309 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47338 * 119.99803 * 23 21 19 26 26 H 1.48500 * 109.47219 * 239.99804 * 23 21 19 27 27 N 1.31922 * 119.57529 * 5.05303 * 14 13 11 28 28 N 1.31828 * 106.95959 * 359.57133 * 10 9 8 29 29 N 1.28467 * 110.06870 * 0.44260 * 28 10 9 30 30 H 0.96998 * 124.88527 * 179.69509 * 29 28 10 31 31 H 1.08998 * 109.47108 * 302.60564 * 1 2 3 32 32 H 1.09003 * 109.46676 * 62.60519 * 1 2 3 33 33 H 1.09001 * 109.47014 * 182.60414 * 1 2 3 34 34 H 1.09002 * 110.66281 * 41.28032 * 3 2 1 35 35 H 1.09000 * 110.80621 * 278.22590 * 3 2 1 36 36 H 1.09004 * 110.72013 * 204.22111 * 4 3 2 37 37 H 1.09002 * 110.87568 * 81.01814 * 4 3 2 38 38 H 1.09003 * 110.30547 * 263.04551 * 5 4 3 39 39 H 1.08999 * 110.31262 * 140.87414 * 5 4 3 40 40 H 1.08005 * 127.24717 * 0.02562 * 9 8 6 41 41 H 0.97005 * 119.99924 * 354.85345 * 13 11 10 42 42 H 1.07999 * 120.25489 * 359.97438 * 15 14 13 43 43 H 1.08006 * 120.66606 * 179.97438 * 16 15 14 44 44 H 1.08006 * 120.42964 * 179.97438 * 17 16 15 45 45 H 0.97006 * 120.00027 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2983 0.1053 1.5931 6 6 1.9991 -0.6354 1.2259 7 1 1.2771 -0.5432 2.0374 8 6 2.2938 -2.0899 0.9641 9 6 1.8510 -3.1424 1.6910 10 6 2.3923 -4.2897 1.0638 11 6 2.2047 -5.6925 1.4852 12 8 1.5277 -5.9484 2.4619 13 7 2.7839 -6.6891 0.7869 14 6 2.6970 -8.0009 1.2438 15 6 3.3930 -9.0113 0.5759 16 6 3.3047 -10.3175 1.0322 17 6 2.5242 -10.5810 2.1437 18 6 1.8480 -9.5208 2.7722 19 6 1.0474 -9.7743 3.9089 20 1 0.9569 -10.7799 4.2923 21 6 0.3714 -8.7216 4.5380 22 7 0.4813 -7.5042 4.0741 23 14 -0.6874 -9.0568 6.0400 24 1 -0.6462 -10.5061 6.3614 25 1 -0.1700 -8.2786 7.1940 26 1 -2.0882 -8.6523 5.7585 27 7 1.9625 -8.2733 2.3052 28 7 3.0936 -3.8681 0.0302 29 7 3.0489 -2.5861 -0.0395 30 1 3.4938 -2.0515 -0.7155 31 1 -0.3633 0.5538 0.8657 32 1 -0.3633 0.4729 -0.9125 33 1 -0.3633 -1.0266 0.0467 34 1 1.4237 2.0204 0.6729 35 1 2.0041 1.8004 -1.0084 36 1 3.8123 2.1352 0.9716 37 1 4.1141 0.8847 -0.2771 38 1 3.2136 0.5486 2.5853 39 1 4.1470 -0.5775 1.5541 40 1 1.2207 -3.1125 2.5675 41 1 3.2616 -6.4922 -0.0340 42 1 3.9947 -8.7768 -0.2898 43 1 3.8346 -11.1134 0.5300 44 1 2.4350 -11.5883 2.5231 45 1 0.0127 -6.7750 4.5098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899225275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:25 Heat of formation + Delta-G solvation = 84.853949 kcal Electronic energy + Delta-G solvation = -28982.827326 eV Core-core repulsion = 25001.887276 eV Total energy + Delta-G solvation = -3980.940050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.69596 -40.85284 -39.86366 -39.09741 -35.94409 -34.85918 -33.27370 -32.84070 -32.74804 -32.19494 -30.84503 -28.80474 -27.52003 -26.54021 -25.53640 -23.51321 -23.06279 -22.48114 -22.09670 -21.77949 -20.58594 -19.46615 -18.71403 -17.92449 -17.65133 -16.97449 -16.66029 -16.46992 -16.25997 -15.99773 -15.58608 -15.51708 -15.30324 -14.96874 -14.66104 -14.60318 -14.51974 -14.18055 -13.91759 -13.70438 -13.39057 -12.89126 -12.71860 -12.68298 -12.53013 -12.49602 -12.38623 -12.31143 -12.03288 -11.91654 -11.73228 -11.55126 -11.53590 -10.94590 -10.87330 -10.30502 -9.99195 -9.89484 -9.58038 -9.13711 -8.82642 -8.03196 -6.40316 0.55299 0.98189 1.15021 1.33913 1.41820 1.55099 1.57126 1.92712 2.28849 2.34024 2.61173 2.91716 3.04259 3.42172 3.58533 3.62947 3.88776 4.06221 4.07370 4.15985 4.29953 4.41808 4.45307 4.49890 4.55746 4.62556 4.75249 4.79536 4.80775 4.91018 4.93351 4.97079 4.99988 5.05679 5.06071 5.14490 5.24752 5.29357 5.32108 5.69258 5.78826 5.84286 5.93128 5.94711 6.12277 6.18739 6.36695 6.67653 6.81619 6.96506 7.08365 7.58674 8.33865 8.59436 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.002784 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.077339 B =10054.531402 C =11508.760501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.531 5.531 3 C 0.034 3.966 4 C -0.119 4.119 5 C -0.126 4.126 6 C 0.133 3.867 7 H 0.083 0.917 8 C 0.057 3.943 9 C -0.200 4.200 10 C -0.022 4.022 11 C 0.552 3.448 12 O -0.446 6.446 13 N -0.646 5.646 14 C 0.349 3.651 15 C -0.346 4.346 16 C -0.033 4.033 17 C -0.326 4.326 18 C 0.235 3.765 19 C -0.463 4.463 20 H 0.088 0.912 21 C 0.009 3.991 22 N -0.693 5.693 23 Si 0.978 3.022 24 H -0.254 1.254 25 H -0.270 1.270 26 H -0.270 1.270 27 N -0.508 5.508 28 N -0.266 5.266 29 N -0.347 5.347 30 H 0.458 0.542 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.152 0.848 41 H 0.419 0.581 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 22.706 -8.071 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.255 5.255 3 C -0.092 4.092 4 C -0.157 4.157 5 C -0.165 4.165 6 C 0.023 3.977 7 H 0.101 0.899 8 C -0.071 4.071 9 C -0.229 4.229 10 C -0.182 4.182 11 C 0.334 3.666 12 O -0.310 6.310 13 N -0.294 5.294 14 C 0.111 3.889 15 C -0.371 4.371 16 C -0.057 4.057 17 C -0.349 4.349 18 C 0.109 3.891 19 C -0.494 4.494 20 H 0.106 0.894 21 C -0.216 4.216 22 N -0.312 5.312 23 Si 0.799 3.201 24 H -0.177 1.177 25 H -0.195 1.195 26 H -0.195 1.195 27 N -0.228 5.228 28 N -0.104 5.104 29 N -0.063 5.063 30 H 0.306 0.694 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.170 0.830 41 H 0.257 0.743 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.126 0.874 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.722 22.772 -8.182 24.482 hybrid contribution -0.467 -0.172 0.791 0.935 sum 3.255 22.600 -7.390 24.000 Atomic orbital electron populations 1.22521 0.86864 1.01789 1.02079 1.64519 1.09166 1.16482 1.35362 1.23348 0.95223 0.88231 1.02440 1.22537 0.96347 0.98793 0.98004 1.22523 0.95260 0.97821 1.00887 1.20943 0.98406 0.85657 0.92685 0.89872 1.21223 0.97981 0.96308 0.91570 1.21549 1.07006 0.89902 1.04398 1.21862 1.04438 0.94460 0.97432 1.17803 0.81225 0.83343 0.84251 1.91224 1.33659 1.82156 1.23927 1.43182 1.54842 1.04070 1.27271 1.19095 0.92895 0.84622 0.92284 1.20954 1.14434 0.93382 1.08370 1.21032 0.94900 0.95784 0.94007 1.21820 1.10265 0.99122 1.03670 1.18929 0.90804 0.86734 0.92621 1.19934 1.24248 0.95889 1.09281 0.89412 1.27086 0.98313 0.94698 1.01510 1.70530 1.27745 0.99701 1.33231 0.85225 0.77774 0.79747 0.77341 1.17705 1.19531 1.19547 1.68671 1.20678 1.21233 1.12246 1.73498 1.21374 0.95399 1.20145 1.43125 1.36656 1.03239 1.23289 0.69418 0.94046 0.89887 0.92860 0.92522 0.88635 0.88895 0.90268 0.89338 0.91295 0.83046 0.74326 0.85350 0.84303 0.87427 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.40 127.69 1.20 1.42 16 2 N -0.53 -7.37 5.17 -888.42 -4.59 -11.96 16 3 C 0.03 0.30 6.56 86.65 0.57 0.87 16 4 C -0.12 -0.89 7.06 31.80 0.22 -0.66 16 5 C -0.13 -1.46 6.56 31.47 0.21 -1.26 16 6 C 0.13 2.13 2.95 44.31 0.13 2.26 16 7 H 0.08 1.35 7.73 -2.39 -0.02 1.33 16 8 C 0.06 1.34 5.86 41.40 0.24 1.58 16 9 C -0.20 -6.39 10.72 22.41 0.24 -6.15 16 10 C -0.02 -0.83 7.13 42.44 0.30 -0.52 16 11 C 0.55 26.01 7.78 86.73 0.67 26.69 16 12 O -0.45 -25.08 12.68 -3.92 -0.05 -25.13 16 13 N -0.65 -29.12 5.38 -311.14 -1.67 -30.79 16 14 C 0.35 18.36 7.43 133.28 0.99 19.35 16 15 C -0.35 -15.94 9.95 22.72 0.23 -15.71 16 16 C -0.03 -1.51 10.15 22.39 0.23 -1.28 16 17 C -0.33 -17.04 9.83 22.87 0.22 -16.81 16 18 C 0.23 14.06 6.55 40.19 0.26 14.33 16 19 C -0.46 -27.03 9.14 23.46 0.21 -26.82 16 20 H 0.09 4.78 7.85 -2.91 -0.02 4.76 16 21 C 0.01 0.51 5.50 85.29 0.47 0.98 16 22 N -0.69 -41.14 8.98 21.84 0.20 -40.94 16 23 Si 0.98 41.57 29.56 68.60 2.03 43.60 16 24 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 N -0.51 -30.79 5.73 -186.41 -1.07 -31.86 16 28 N -0.27 -8.11 11.93 -48.19 -0.57 -8.69 16 29 N -0.35 -7.84 6.83 -47.93 -0.33 -8.17 16 30 H 0.46 7.13 8.96 -220.00 -1.97 5.15 16 31 H 0.04 0.50 8.01 -2.39 -0.02 0.48 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.43 7.96 -2.39 -0.02 0.42 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.93 7.68 -2.39 -0.02 0.91 16 40 H 0.15 4.95 8.06 -2.91 -0.02 4.92 16 41 H 0.42 15.61 8.43 -92.70 -0.78 14.83 16 42 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 43 H 0.14 5.06 8.06 -2.91 -0.02 5.03 16 44 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 45 H 0.27 15.06 8.29 -92.70 -0.77 14.29 16 Total: -1.00 -78.20 376.14 -1.37 -79.56 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -1.71 Total: 36.13 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 6.41 Total: -1.75 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -8.04 Total: -132.41 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -78.20 -1.37 -79.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899225275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.415 kcal (2) G-P(sol) polarization free energy of solvation -78.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds