Wall clock time and date at job start Wed Apr 1 2020 01:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.39861 * 125.40290 * 2 1 4 4 C 1.30644 * 110.03802 * 179.72597 * 3 2 1 5 5 N 1.39752 * 126.17633 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00125 * 0.40404 * 5 4 3 7 7 C 1.50695 * 109.47564 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99923 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00401 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00329 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47164 * 89.99800 * 10 9 7 12 12 H 1.08002 * 119.99455 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00045 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00123 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99908 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47218 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.46982 * 120.00177 * 15 13 11 18 18 H 1.48502 * 109.47134 * 239.99696 * 15 13 11 19 19 C 1.46499 * 119.99869 * 359.97438 * 9 7 6 20 20 C 1.53001 * 109.47056 * 89.99818 * 19 9 7 21 21 C 1.47202 * 109.47264 * 179.97438 * 20 19 9 22 22 N 7.74741 * 93.29711 * 10.97214 * 2 1 3 23 23 C 1.46376 * 107.65003 * 0.38130 * 4 3 2 24 24 C 1.39794 * 134.02196 * 179.91082 * 23 4 3 25 25 C 1.36512 * 119.65657 * 179.70415 * 24 23 4 26 26 C 1.38963 * 120.60550 * 0.02562 * 25 24 23 27 27 C 1.36597 * 120.80018 * 359.97438 * 26 25 24 28 28 C 1.37059 * 125.39635 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47252 * 270.02959 * 1 2 3 30 30 H 1.09006 * 109.46858 * 30.02310 * 1 2 3 31 31 H 1.08998 * 109.47300 * 150.02377 * 1 2 3 32 32 H 0.97009 * 120.00151 * 180.40337 * 5 4 3 33 33 H 1.09011 * 109.47092 * 300.00295 * 6 5 4 34 34 H 1.09000 * 109.46912 * 59.99505 * 6 5 4 35 35 H 1.08994 * 109.47213 * 210.00099 * 10 9 7 36 36 H 1.08999 * 109.46786 * 329.99953 * 10 9 7 37 37 H 0.96998 * 120.00206 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47311 * 210.00174 * 19 9 7 39 39 H 1.09003 * 109.47322 * 330.00041 * 19 9 7 40 40 H 1.08998 * 109.47351 * 300.00332 * 20 19 9 41 41 H 1.09005 * 109.46958 * 60.00478 * 20 19 9 42 42 H 1.08003 * 120.17742 * 359.67336 * 24 23 4 43 43 H 1.07994 * 119.69754 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.59700 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.07238 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2752 1.1400 0.0000 4 6 3.5349 0.7939 0.0059 5 7 4.6292 1.6631 0.0082 6 6 4.4138 3.1121 0.0129 7 6 5.7451 3.8180 0.0140 8 8 6.7729 3.1741 0.0107 9 7 5.7938 5.1649 0.0187 10 6 7.0882 5.8511 0.0204 11 6 7.5312 6.0914 -1.3999 12 1 6.9104 5.7658 -2.2215 13 6 8.7289 6.7267 -1.6503 14 7 9.4845 7.1236 -0.6497 15 14 9.2777 7.0251 -3.4108 16 1 8.2565 6.4878 -4.3454 17 1 9.4391 8.4838 -3.6384 18 1 10.5740 6.3407 -3.6479 19 6 4.5524 5.9427 0.0222 20 6 4.1210 6.2084 1.4659 21 6 2.8740 6.9905 1.4694 22 7 1.9105 7.5932 1.4721 23 6 3.5933 -0.6687 0.0009 24 6 4.6365 -1.5993 0.0018 25 6 4.3508 -2.9342 0.0020 26 6 3.0332 -3.3758 0.0007 27 6 1.9972 -2.4855 -0.0003 28 6 2.2588 -1.1173 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 5.5316 1.3069 0.0068 33 1 3.8517 3.3987 -0.8760 34 1 3.8523 3.3930 0.9040 35 1 6.9926 6.8058 0.5376 36 1 7.8263 5.2332 0.5316 37 1 10.3273 7.5703 -0.8259 38 1 4.7167 6.8916 -0.4885 39 1 3.7716 5.3832 -0.4932 40 1 3.9567 5.2595 1.9765 41 1 4.9018 6.7679 1.9812 42 1 5.6631 -1.2640 0.0019 43 1 5.1562 -3.6537 0.0023 44 1 2.8258 -4.4357 0.0013 45 1 0.9776 -2.8416 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901507862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:04 Heat of formation + Delta-G solvation = 72.171831 kcal Electronic energy + Delta-G solvation = -28336.858663 eV Core-core repulsion = 24355.368675 eV Total energy + Delta-G solvation = -3981.489988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10786 -40.91070 -38.16054 -38.00536 -36.95605 -36.45268 -34.86796 -33.37895 -32.18758 -31.21645 -30.65792 -30.04623 -28.10947 -26.30533 -25.35105 -24.49323 -23.63971 -22.85074 -21.06227 -20.23297 -18.97913 -18.61281 -18.34754 -17.96915 -17.54457 -17.18557 -16.68958 -16.45807 -16.18525 -16.12988 -15.81910 -15.75105 -15.31726 -14.93935 -14.85266 -14.54874 -14.46270 -14.16587 -14.06716 -13.67507 -13.59269 -13.56073 -13.36258 -13.19267 -12.95513 -12.71320 -12.68679 -12.65051 -12.53744 -12.18561 -11.91275 -11.89849 -11.65203 -11.55364 -11.35113 -10.73570 -10.58602 -9.89917 -9.55168 -9.50547 -8.23885 -8.18138 -6.29780 0.11810 0.65323 1.39599 1.40440 1.42722 1.52518 1.60867 1.72251 1.78845 1.83463 2.06587 2.41382 2.54752 2.93068 3.07919 3.14822 3.51779 3.62713 3.78314 3.98038 4.07230 4.08939 4.20878 4.31009 4.37080 4.49480 4.51779 4.54435 4.58125 4.59531 4.74818 4.81371 4.88104 5.02492 5.04148 5.09132 5.25130 5.33808 5.53006 5.58258 5.68055 5.84149 5.92518 6.12173 6.15921 6.29127 6.42251 6.59011 6.65118 6.80038 7.03215 7.26321 7.43175 8.88843 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.002817 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.671198 B = 9937.795060 C =11934.729848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.417 5.417 3 N -0.347 5.347 4 C 0.353 3.647 5 N -0.699 5.699 6 C 0.126 3.874 7 C 0.503 3.497 8 O -0.576 6.576 9 N -0.590 5.590 10 C 0.259 3.741 11 C -0.539 4.539 12 H 0.053 0.947 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.956 3.044 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.285 1.285 19 C 0.110 3.890 20 C -0.038 4.038 21 C 0.245 3.755 22 N -0.488 5.488 23 C -0.224 4.224 24 C -0.049 4.049 25 C -0.172 4.172 26 C -0.059 4.059 27 C -0.155 4.155 28 C 0.134 3.866 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.419 0.581 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.161 0.839 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.258 -18.715 3.293 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.205 5.205 3 N -0.174 5.174 4 C 0.085 3.915 5 N -0.345 5.345 6 C -0.001 4.001 7 C 0.291 3.709 8 O -0.456 6.456 9 N -0.320 5.320 10 C 0.138 3.862 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.186 4.186 14 N -0.564 5.564 15 Si 0.782 3.218 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.211 1.211 19 C -0.014 4.014 20 C -0.079 4.079 21 C -0.072 4.072 22 N -0.166 5.166 23 C -0.234 4.234 24 C -0.070 4.070 25 C -0.192 4.192 26 C -0.080 4.080 27 C -0.178 4.178 28 C 0.018 3.982 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.258 0.742 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.179 0.821 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.075 -16.859 3.331 25.675 hybrid contribution 2.051 -0.174 -0.835 2.222 sum -17.024 -17.033 2.497 24.211 Atomic orbital electron populations 1.21926 0.72224 1.05152 1.03678 1.47919 1.06280 0.99852 1.66499 1.76581 0.99923 1.08678 1.32191 1.20273 0.87864 0.87863 0.95501 1.43477 1.05145 1.02865 1.82969 1.21087 0.93655 0.80399 1.04940 1.20833 0.91072 0.82843 0.76195 1.90660 1.37410 1.65873 1.51668 1.47994 1.08210 1.04928 1.70869 1.18884 0.79760 0.91715 0.95794 1.21763 1.05137 1.37386 0.93508 0.92856 1.25680 0.96487 0.95480 1.00985 1.70019 1.13237 1.40728 1.32458 0.85535 0.78042 0.77942 0.80293 1.19381 1.19972 1.21062 1.21580 0.85889 0.98650 0.95320 1.19829 0.87958 1.00332 0.99795 1.29146 0.93850 0.92417 0.91796 1.81264 1.13622 1.11795 1.09942 1.19762 0.95083 0.91030 1.17556 1.20559 0.97738 0.93013 0.95658 1.20962 0.98102 0.94797 1.05362 1.21148 0.91534 1.00845 0.94425 1.20160 1.01687 0.87658 1.08246 1.19139 0.89638 0.90759 0.98703 0.90629 0.89606 0.87654 0.74158 0.88445 0.87106 0.94302 0.97268 0.92560 0.89142 0.87880 0.84945 0.85678 0.85544 0.83510 0.82099 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.49 11.39 127.77 1.46 2.94 16 2 N -0.42 -9.69 4.05 -361.04 -1.46 -11.16 16 3 N -0.35 -9.80 12.07 -50.85 -0.61 -10.42 16 4 C 0.35 10.13 8.15 135.22 1.10 11.24 16 5 N -0.70 -20.10 5.73 -342.63 -1.96 -22.07 16 6 C 0.13 3.37 5.07 85.63 0.43 3.80 16 7 C 0.50 17.76 7.74 87.66 0.68 18.43 16 8 O -0.58 -25.77 15.25 -3.04 -0.05 -25.81 16 9 N -0.59 -20.59 2.46 -826.16 -2.03 -22.62 16 10 C 0.26 12.14 5.16 85.64 0.44 12.58 16 11 C -0.54 -28.54 9.39 25.60 0.24 -28.30 16 12 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 13 C 0.01 0.71 5.46 84.65 0.46 1.17 16 14 N -0.92 -52.77 13.29 21.44 0.28 -52.49 16 15 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 C 0.11 2.69 5.17 86.38 0.45 3.13 16 20 C -0.04 -0.71 6.03 28.79 0.17 -0.53 16 21 C 0.25 5.54 15.44 89.44 1.38 6.92 16 22 N -0.49 -13.97 18.54 20.01 0.37 -13.60 16 23 C -0.22 -5.88 6.38 -20.16 -0.13 -6.01 16 24 C -0.05 -1.09 10.06 22.24 0.22 -0.86 16 25 C -0.17 -2.84 9.97 22.04 0.22 -2.62 16 26 C -0.06 -0.80 9.96 22.06 0.22 -0.58 16 27 C -0.16 -2.46 9.96 22.14 0.22 -2.24 16 28 C 0.13 3.07 6.86 39.21 0.27 3.34 16 29 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.11 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.42 12.72 7.56 -92.70 -0.70 12.01 16 33 H 0.10 2.43 7.40 -2.38 -0.02 2.42 16 34 H 0.11 2.39 7.18 -2.39 -0.02 2.38 16 35 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 36 H 0.01 0.50 7.42 -2.39 -0.02 0.48 16 37 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 39 H 0.10 2.03 6.44 -2.39 -0.02 2.02 16 40 H 0.13 1.87 7.22 -2.39 -0.02 1.86 16 41 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 44 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -76.48 394.69 4.74 -71.74 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.33 Total: 18.71 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 7.84 Total: 22.40 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -5.41 Total: -132.35 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -76.48 4.74 -71.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901507862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.914 kcal (2) G-P(sol) polarization free energy of solvation -76.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds