Wall clock time and date at job start Wed Apr 1 2020 01:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46492 * 109.46988 * 2 1 4 4 C 1.46503 * 120.00003 * 82.09297 * 3 2 1 5 5 C 1.50701 * 109.46787 * 81.51444 * 4 3 2 6 6 H 1.08002 * 120.00142 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00065 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00011 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00010 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47344 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47092 * 119.99817 * 9 7 5 12 12 H 1.48506 * 109.46662 * 239.99330 * 9 7 5 13 13 S 1.65605 * 120.00221 * 262.09515 * 3 2 1 14 14 O 1.42100 * 106.40046 * 195.55646 * 13 3 2 15 15 O 1.42100 * 106.40060 * 328.47775 * 13 3 2 16 16 C 1.76202 * 107.21881 * 82.01975 * 13 3 2 17 17 C 1.35318 * 126.03755 * 247.34243 * 16 13 3 18 18 N 1.34949 * 107.74223 * 179.86967 * 17 16 13 19 19 C 1.46501 * 126.03071 * 180.14399 * 18 17 16 20 20 N 1.40084 * 107.92785 * 0.39323 * 18 17 16 21 21 C 1.30845 * 108.20424 * 359.75309 * 20 18 17 22 22 C 1.50691 * 125.89588 * 179.97438 * 21 20 18 23 23 C 1.54270 * 110.03288 * 63.80137 * 22 21 20 24 24 C 1.54888 * 104.19636 * 217.10377 * 23 22 21 25 25 C 1.54895 * 102.75177 * 37.93824 * 24 23 22 26 26 C 1.53875 * 110.03683 * 306.63095 * 22 21 20 27 27 H 1.09002 * 109.46662 * 184.99540 * 1 2 3 28 28 H 1.08998 * 109.46500 * 304.98740 * 1 2 3 29 29 H 1.09000 * 109.47235 * 64.98942 * 1 2 3 30 30 H 1.09005 * 109.46704 * 240.00430 * 2 1 3 31 31 H 1.08994 * 109.47272 * 120.00139 * 2 1 3 32 32 H 1.09001 * 109.47463 * 201.50946 * 4 3 2 33 33 H 1.08997 * 109.47365 * 321.51658 * 4 3 2 34 34 H 0.96998 * 120.00257 * 180.02562 * 8 7 5 35 35 H 1.08003 * 126.12592 * 0.02562 * 17 16 13 36 36 H 1.08998 * 109.47208 * 270.25902 * 19 18 17 37 37 H 1.09000 * 109.47377 * 30.26890 * 19 18 17 38 38 H 1.09009 * 109.46454 * 150.26605 * 19 18 17 39 39 H 1.09000 * 110.01469 * 185.24125 * 22 21 20 40 40 H 1.08995 * 110.48578 * 335.77858 * 23 22 21 41 41 H 1.09002 * 110.48516 * 98.42299 * 23 22 21 42 42 H 1.09001 * 110.75533 * 279.62638 * 24 23 22 43 43 H 1.09001 * 110.75931 * 156.25676 * 24 23 22 44 44 H 1.08990 * 110.48753 * 203.37933 * 25 24 23 45 45 H 1.09000 * 110.59412 * 80.78833 * 25 24 23 46 46 H 1.08996 * 110.03679 * 238.57069 * 26 22 21 47 47 H 1.09000 * 110.02654 * 359.95807 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0980 2.1300 1.2567 5 6 3.3635 1.7563 1.9847 6 1 4.0405 1.0331 1.5545 7 6 3.6565 2.3370 3.2004 8 7 2.8319 3.2173 3.7245 9 14 5.2256 1.8744 4.1025 10 1 5.9764 0.8703 3.3067 11 1 6.0641 3.0855 4.2901 12 1 4.8831 1.2992 5.4281 13 16 2.4804 2.0961 -1.4205 14 8 3.2276 3.2510 -1.0640 15 8 2.9978 1.0587 -2.2422 16 6 1.0171 2.6755 -2.2129 17 6 0.4946 2.1991 -3.3667 18 7 -0.6247 2.9042 -3.6333 19 6 -1.5070 2.7165 -4.7877 20 7 -0.7909 3.8510 -2.6143 21 6 0.1936 3.7129 -1.7635 22 6 0.4042 4.5309 -0.5156 23 6 -0.7584 4.2981 0.4713 24 6 -0.9928 5.6866 1.1165 25 6 -0.7736 6.6567 -0.0709 26 6 0.3946 6.0306 -0.8604 27 1 -0.3633 -1.0238 0.0895 28 1 -0.3632 0.5893 0.8420 29 1 -0.3634 0.4345 -0.9313 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.1038 3.1988 1.0431 33 1 1.2362 1.8884 1.8788 34 1 3.0382 3.6261 4.5796 35 1 0.8994 1.3966 -3.9654 36 1 -1.1677 3.3459 -5.6104 37 1 -1.4841 1.6714 -5.0963 38 1 -2.5256 2.9927 -4.5151 39 1 1.3513 4.2614 -0.0483 40 1 -1.6508 3.9694 -0.0612 41 1 -0.4748 3.5681 1.2295 42 1 -0.2656 5.8730 1.9068 43 1 -2.0102 5.7680 1.4992 44 1 -0.5012 7.6479 0.2915 45 1 -1.6679 6.7110 -0.6918 46 1 1.3366 6.4890 -0.5596 47 1 0.2383 6.1666 -1.9305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906911633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:07 Heat of formation + Delta-G solvation = -9.564834 kcal Electronic energy + Delta-G solvation = -30136.845799 eV Core-core repulsion = 26254.962644 eV Total energy + Delta-G solvation = -3881.883155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29808 -37.77954 -36.46561 -35.98058 -35.05326 -33.44727 -32.61126 -30.43963 -29.89244 -29.10308 -28.35744 -26.59500 -26.07340 -23.13169 -21.91593 -21.57903 -21.34386 -20.32249 -19.00542 -18.16083 -17.49899 -16.61244 -16.40846 -15.66720 -15.48258 -15.38593 -15.21505 -14.95348 -14.40025 -13.83373 -13.55519 -13.39215 -13.29296 -13.11770 -12.96192 -12.88091 -12.74090 -12.02918 -11.90407 -11.65433 -11.58516 -11.25866 -11.22961 -11.22322 -10.98274 -10.93434 -10.84269 -10.80504 -10.71157 -10.56267 -10.38178 -10.29665 -10.27201 -9.99794 -9.92694 -9.60716 -9.23476 -8.97418 -8.38388 -7.97864 -6.01650 -4.04893 1.17403 1.66128 2.39152 2.46492 3.34197 3.42288 3.47207 3.84795 4.25210 4.47260 4.55613 4.61053 4.75587 4.86875 4.96048 4.97941 5.04543 5.12413 5.31784 5.37728 5.47007 5.50234 5.64280 5.78522 5.80156 5.82197 5.84018 5.90128 5.99292 6.06478 6.10112 6.20749 6.22148 6.33088 6.33932 6.54966 6.57681 6.64598 6.67383 6.69744 6.75310 6.85922 7.33825 7.50726 7.60537 7.69660 7.96244 8.26888 8.97851 9.59829 11.06611 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.005324 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.273165 B = 5257.473358 C = 6602.528081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.981 5.981 4 C 0.252 3.748 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.285 1.285 13 S 2.712 3.288 14 O -0.947 6.947 15 O -0.986 6.986 16 C -0.807 4.807 17 C 0.166 3.834 18 N -0.371 5.371 19 C 0.097 3.903 20 N -0.294 5.294 21 C 0.180 3.820 22 C -0.040 4.040 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.111 4.111 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.189 0.811 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 -0.519 -12.848 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.820 5.820 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.211 1.211 13 S 2.799 3.201 14 O -0.936 6.936 15 O -0.976 6.976 16 C -0.903 4.903 17 C 0.013 3.987 18 N -0.148 5.148 19 C -0.045 4.045 20 N -0.114 5.114 21 C 0.011 3.989 22 C -0.060 4.060 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.158 4.158 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.205 0.795 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.711 0.325 -13.489 17.866 hybrid contribution 0.712 -0.654 0.430 1.058 sum -10.999 -0.329 -13.059 17.077 Atomic orbital electron populations 1.22226 0.97425 1.01313 1.01919 1.21119 0.92938 0.83105 1.03455 1.57371 1.81032 1.21036 1.22589 1.19224 0.97556 0.91424 0.78770 1.21543 1.06316 1.24761 1.04270 0.92041 1.24896 0.96852 0.94859 0.97200 1.69920 1.36446 1.28027 1.18701 0.86519 0.83493 0.78488 0.79411 1.19663 1.20853 1.21071 1.01305 0.73123 0.73299 0.72413 1.93573 1.67384 1.50074 1.82617 1.93461 1.77425 1.57629 1.69096 1.32052 1.29941 1.15977 1.12329 1.22392 0.86479 0.95007 0.94800 1.48967 1.19576 1.26412 1.19836 1.21946 0.94566 1.03056 0.84920 1.77323 1.23368 1.11477 0.99256 1.21814 0.89728 0.92354 0.94960 1.20855 1.02217 0.93825 0.89108 1.22407 0.96619 0.98284 0.97647 1.22488 1.01407 0.94361 0.97759 1.22335 0.98044 0.98516 0.96904 1.22142 0.99363 0.93283 1.00131 0.92423 0.91782 0.93705 0.90776 0.89536 0.93258 0.94707 0.92810 0.79454 0.90464 0.89185 0.89006 0.86707 0.91786 0.90091 0.90441 0.91848 0.91843 0.92045 0.90782 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.22 37.16 0.38 -2.10 16 2 C 0.12 2.07 6.40 -4.04 -0.03 2.05 16 3 N -0.98 -20.19 2.78 -115.66 -0.32 -20.51 16 4 C 0.25 6.08 5.14 -5.19 -0.03 6.05 16 5 C -0.53 -14.42 9.35 -34.44 -0.32 -14.74 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 S 2.71 55.47 5.36 -107.50 -0.58 54.90 16 14 O -0.95 -22.62 15.47 -57.17 -0.88 -23.50 16 15 O -0.99 -20.47 16.47 -57.17 -0.94 -21.41 16 16 C -0.81 -13.97 6.15 -40.01 -0.25 -14.21 16 17 C 0.17 2.30 11.12 -17.22 -0.19 2.11 16 18 N -0.37 -4.80 4.01 -68.16 -0.27 -5.08 16 19 C 0.10 0.71 11.47 59.85 0.69 1.39 16 20 N -0.29 -4.70 12.32 33.67 0.41 -4.29 16 21 C 0.18 3.14 5.46 -82.41 -0.45 2.69 16 22 C -0.04 -0.71 3.31 -90.66 -0.30 -1.01 16 23 C -0.11 -1.80 6.35 -25.07 -0.16 -1.96 16 24 C -0.12 -1.76 6.91 -24.74 -0.17 -1.94 16 25 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 26 C -0.11 -1.75 6.43 -25.61 -0.16 -1.92 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.18 7.01 -51.93 -0.36 0.82 16 31 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 32 H 0.05 1.26 4.76 -51.93 -0.25 1.01 16 33 H 0.03 0.85 7.78 -51.93 -0.40 0.45 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.19 1.96 8.06 -52.48 -0.42 1.54 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.12 2.35 3.77 -51.93 -0.20 2.16 16 40 H 0.06 0.99 7.80 -51.93 -0.41 0.59 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.06 0.98 7.53 -51.93 -0.39 0.59 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -33.66 389.48 -9.71 -43.37 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.45 Total: 2.35 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -1.26 Total: -23.72 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.56 Total: -54.26 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.83 Total: -44.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 55.47 SS G_CDS: -0.58 Total: 54.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.66 -9.71 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906911633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.804 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds