Wall clock time and date at job start Wed Apr 1 2020 01:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46492 * 109.46988 * 2 1 4 4 C 1.46503 * 120.00003 * 82.09297 * 3 2 1 5 5 C 1.50701 * 109.46787 * 81.51444 * 4 3 2 6 6 H 1.08002 * 120.00142 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00065 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00011 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00010 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47344 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47092 * 119.99817 * 9 7 5 12 12 H 1.48506 * 109.46662 * 239.99330 * 9 7 5 13 13 S 1.65605 * 120.00221 * 262.09515 * 3 2 1 14 14 O 1.42100 * 106.40046 * 195.55646 * 13 3 2 15 15 O 1.42100 * 106.40060 * 328.47775 * 13 3 2 16 16 C 1.76202 * 107.21881 * 82.01975 * 13 3 2 17 17 C 1.35318 * 126.03755 * 247.34243 * 16 13 3 18 18 N 1.34949 * 107.74223 * 179.86967 * 17 16 13 19 19 C 1.46501 * 126.03071 * 180.14399 * 18 17 16 20 20 N 1.40084 * 107.92785 * 0.39323 * 18 17 16 21 21 C 1.30845 * 108.20424 * 359.75309 * 20 18 17 22 22 C 1.50691 * 125.89588 * 179.97438 * 21 20 18 23 23 C 1.54270 * 110.03288 * 63.80137 * 22 21 20 24 24 C 1.54888 * 104.19636 * 217.10377 * 23 22 21 25 25 C 1.54895 * 102.75177 * 37.93824 * 24 23 22 26 26 C 1.53875 * 110.03683 * 306.63095 * 22 21 20 27 27 H 1.09002 * 109.46662 * 184.99540 * 1 2 3 28 28 H 1.08998 * 109.46500 * 304.98740 * 1 2 3 29 29 H 1.09000 * 109.47235 * 64.98942 * 1 2 3 30 30 H 1.09005 * 109.46704 * 240.00430 * 2 1 3 31 31 H 1.08994 * 109.47272 * 120.00139 * 2 1 3 32 32 H 1.09001 * 109.47463 * 201.50946 * 4 3 2 33 33 H 1.08997 * 109.47365 * 321.51658 * 4 3 2 34 34 H 0.96998 * 120.00257 * 180.02562 * 8 7 5 35 35 H 1.08003 * 126.12592 * 0.02562 * 17 16 13 36 36 H 1.08998 * 109.47208 * 270.25902 * 19 18 17 37 37 H 1.09000 * 109.47377 * 30.26890 * 19 18 17 38 38 H 1.09009 * 109.46454 * 150.26605 * 19 18 17 39 39 H 1.09000 * 110.01469 * 185.24125 * 22 21 20 40 40 H 1.08995 * 110.48578 * 335.77858 * 23 22 21 41 41 H 1.09002 * 110.48516 * 98.42299 * 23 22 21 42 42 H 1.09001 * 110.75533 * 279.62638 * 24 23 22 43 43 H 1.09001 * 110.75931 * 156.25676 * 24 23 22 44 44 H 1.08990 * 110.48753 * 203.37933 * 25 24 23 45 45 H 1.09000 * 110.59412 * 80.78833 * 25 24 23 46 46 H 1.08996 * 110.03679 * 238.57069 * 26 22 21 47 47 H 1.09000 * 110.02654 * 359.95807 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0980 2.1300 1.2567 5 6 3.3635 1.7563 1.9847 6 1 4.0405 1.0331 1.5545 7 6 3.6565 2.3370 3.2004 8 7 2.8319 3.2173 3.7245 9 14 5.2256 1.8744 4.1025 10 1 5.9764 0.8703 3.3067 11 1 6.0641 3.0855 4.2901 12 1 4.8831 1.2992 5.4281 13 16 2.4804 2.0961 -1.4205 14 8 3.2276 3.2510 -1.0640 15 8 2.9978 1.0587 -2.2422 16 6 1.0171 2.6755 -2.2129 17 6 0.4946 2.1991 -3.3667 18 7 -0.6247 2.9042 -3.6333 19 6 -1.5070 2.7165 -4.7877 20 7 -0.7909 3.8510 -2.6143 21 6 0.1936 3.7129 -1.7635 22 6 0.4042 4.5309 -0.5156 23 6 -0.7584 4.2981 0.4713 24 6 -0.9928 5.6866 1.1165 25 6 -0.7736 6.6567 -0.0709 26 6 0.3946 6.0306 -0.8604 27 1 -0.3633 -1.0238 0.0895 28 1 -0.3632 0.5893 0.8420 29 1 -0.3634 0.4345 -0.9313 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.1038 3.1988 1.0431 33 1 1.2362 1.8884 1.8788 34 1 3.0382 3.6261 4.5796 35 1 0.8994 1.3966 -3.9654 36 1 -1.1677 3.3459 -5.6104 37 1 -1.4841 1.6714 -5.0963 38 1 -2.5256 2.9927 -4.5151 39 1 1.3513 4.2614 -0.0483 40 1 -1.6508 3.9694 -0.0612 41 1 -0.4748 3.5681 1.2295 42 1 -0.2656 5.8730 1.9068 43 1 -2.0102 5.7680 1.4992 44 1 -0.5012 7.6479 0.2915 45 1 -1.6679 6.7110 -0.6918 46 1 1.3366 6.4890 -0.5596 47 1 0.2383 6.1666 -1.9305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906911633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:06 Heat of formation + Delta-G solvation = -31.760266 kcal Electronic energy + Delta-G solvation = -30137.808265 eV Core-core repulsion = 26254.962644 eV Total energy + Delta-G solvation = -3882.845622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46244 -39.03583 -38.11036 -37.60388 -36.75196 -34.64780 -34.43612 -31.68467 -31.38218 -30.20965 -29.60544 -28.46215 -27.06856 -24.92048 -23.32715 -22.79163 -22.67095 -21.50180 -20.29742 -19.63642 -18.93773 -18.42573 -18.11735 -17.11526 -16.85603 -16.58770 -16.46106 -16.26475 -16.09414 -15.39044 -14.73782 -14.71960 -14.57492 -14.51260 -14.25937 -13.83090 -13.77098 -13.63414 -13.48328 -13.31029 -13.11527 -12.95101 -12.67965 -12.65653 -12.65277 -12.46123 -12.29082 -12.13441 -12.10795 -11.99025 -11.93655 -11.71115 -11.66389 -11.58322 -11.44999 -11.28158 -10.51209 -10.41653 -10.12561 -9.68557 -8.12316 -6.23158 -0.37976 0.53676 1.14125 1.41811 1.44672 1.45457 1.55727 2.28848 2.46879 2.92658 3.18402 3.24834 3.39858 3.68853 3.74723 3.82993 3.88852 4.06172 4.20082 4.35698 4.39835 4.44033 4.48876 4.51818 4.54621 4.60210 4.62110 4.66407 4.74501 4.82783 4.86268 4.97275 5.05235 5.07371 5.13358 5.20625 5.23575 5.30352 5.37789 5.39512 5.47585 5.51959 5.61822 5.82671 5.86246 6.03418 6.20708 6.40717 6.85245 7.44568 8.94879 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.005324 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.273165 B = 5257.473358 C = 6602.528081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.111 3.889 3 N -0.988 5.988 4 C 0.271 3.729 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.272 1.272 13 S 2.719 3.281 14 O -0.994 6.994 15 O -0.994 6.994 16 C -0.830 4.830 17 C 0.182 3.818 18 N -0.357 5.357 19 C 0.082 3.918 20 N -0.303 5.303 21 C 0.168 3.832 22 C -0.047 4.047 23 C -0.105 4.105 24 C -0.121 4.121 25 C -0.110 4.110 26 C -0.112 4.112 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.226 0.774 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 -1.361 -14.809 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.014 4.014 3 N -0.826 5.826 4 C 0.148 3.852 5 C -0.589 4.589 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.197 1.197 13 S 2.811 3.189 14 O -0.984 6.984 15 O -0.984 6.984 16 C -0.931 4.931 17 C 0.027 3.973 18 N -0.133 5.133 19 C -0.057 4.057 20 N -0.124 5.124 21 C 0.000 4.000 22 C -0.067 4.067 23 C -0.144 4.144 24 C -0.158 4.158 25 C -0.147 4.147 26 C -0.150 4.150 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.481 -0.545 -15.445 20.508 hybrid contribution 1.183 -0.431 0.873 1.532 sum -12.298 -0.976 -14.572 19.093 Atomic orbital electron populations 1.22127 0.95136 1.02990 1.01573 1.21370 0.94910 0.81360 1.03759 1.57248 1.81606 1.22272 1.21511 1.18735 0.95816 0.90832 0.79830 1.21883 1.07387 1.24717 1.04946 0.92905 1.25654 0.99763 0.94857 0.98021 1.70015 1.37879 1.28701 1.19111 0.85621 0.79934 0.78196 0.78636 1.19426 1.20698 1.19716 1.00582 0.73702 0.72414 0.72206 1.93513 1.69805 1.51672 1.83392 1.93432 1.78418 1.57677 1.68904 1.31444 1.29575 1.17760 1.14345 1.22875 0.85988 0.94914 0.93486 1.49371 1.19489 1.24588 1.19874 1.22510 0.93960 1.05950 0.83242 1.77244 1.22801 1.12559 0.99796 1.21686 0.90440 0.92651 0.95234 1.20767 1.00909 0.95148 0.89908 1.22330 0.96320 0.98811 0.96909 1.22486 1.02224 0.93500 0.97637 1.22298 0.97555 0.98708 0.96174 1.22156 0.99956 0.92334 1.00581 0.89342 0.93490 0.92935 0.89183 0.90475 0.95095 0.95761 0.92533 0.75717 0.88569 0.85593 0.88170 0.90325 0.90902 0.92449 0.92202 0.89508 0.90236 0.90500 0.91988 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 10.22 71.99 0.74 -3.77 16 2 C 0.11 3.84 6.40 86.38 0.55 4.40 16 3 N -0.99 -42.14 2.78 -519.84 -1.45 -43.58 16 4 C 0.27 13.83 5.14 85.63 0.44 14.28 16 5 C -0.55 -31.20 9.35 25.60 0.24 -30.96 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.02 0.96 5.46 84.65 0.46 1.42 16 8 N -0.92 -53.41 13.29 21.45 0.28 -53.13 16 9 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 S 2.72 114.14 5.36 -56.49 -0.30 113.84 16 14 O -0.99 -50.28 15.47 -128.00 -1.98 -52.26 16 15 O -0.99 -41.08 16.47 -128.00 -2.11 -43.18 16 16 C -0.83 -28.34 6.15 21.99 0.14 -28.21 16 17 C 0.18 4.55 11.12 83.54 0.93 5.48 16 18 N -0.36 -8.06 4.01 -369.55 -1.48 -9.55 16 19 C 0.08 0.83 11.47 127.77 1.47 2.29 16 20 N -0.30 -9.15 12.32 -47.39 -0.58 -9.74 16 21 C 0.17 5.85 5.46 43.10 0.24 6.09 16 22 C -0.05 -1.73 3.31 -10.82 -0.04 -1.77 16 23 C -0.11 -3.52 6.35 31.67 0.20 -3.32 16 24 C -0.12 -3.49 6.91 31.89 0.22 -3.27 16 25 C -0.11 -2.89 6.83 31.67 0.22 -2.67 16 26 C -0.11 -3.62 6.43 31.32 0.20 -3.42 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.48 7.79 -2.39 -0.02 1.46 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 2.79 7.01 -2.38 -0.02 2.78 16 31 H 0.08 2.77 8.13 -2.39 -0.02 2.75 16 32 H 0.03 1.72 4.76 -2.39 -0.01 1.70 16 33 H 0.02 1.27 7.78 -2.39 -0.02 1.25 16 34 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.23 3.74 8.06 -2.91 -0.02 3.71 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.08 3.50 3.77 -2.39 -0.01 3.49 16 40 H 0.07 2.25 7.80 -2.39 -0.02 2.24 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 2.03 7.53 -2.39 -0.02 2.01 16 Total: -1.00 -76.03 389.48 1.36 -74.67 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.96 Total: 19.60 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 6.00 Total: -43.42 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -3.23 Total: -115.99 kcal Atomic # 8 Polarization: -91.35 SS G_CDS: -4.09 Total: -95.44 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 114.14 SS G_CDS: -0.30 Total: 113.84 kcal Total: -76.03 1.36 -74.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906911633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.906 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds