Wall clock time and date at job start Wed Apr 1 2020 00:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47302 * 2 1 4 4 C 1.50704 * 109.47197 * 240.00465 * 2 1 3 5 5 H 1.07998 * 119.99820 * 240.00320 * 4 2 1 6 6 C 1.37877 * 120.00071 * 59.99194 * 4 2 1 7 7 N 1.31518 * 119.99901 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00019 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47122 * 60.00623 * 8 6 4 10 10 H 1.48505 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46960 * 300.00319 * 8 6 4 12 12 N 1.46499 * 109.47354 * 120.00670 * 2 1 3 13 13 C 1.46494 * 120.00176 * 64.78356 * 12 2 1 14 14 S 1.65603 * 119.99590 * 244.79140 * 12 2 1 15 15 O 1.42104 * 106.39845 * 195.68232 * 14 12 2 16 16 O 1.42099 * 106.40170 * 328.59851 * 14 12 2 17 17 C 1.76201 * 107.22016 * 82.14055 * 14 12 2 18 18 C 1.35309 * 126.04210 * 247.47897 * 17 14 12 19 19 N 1.34941 * 107.74947 * 180.02562 * 18 17 14 20 20 C 1.46502 * 126.04335 * 180.02562 * 19 18 17 21 21 N 1.40084 * 107.92384 * 359.97438 * 19 18 17 22 22 C 1.30833 * 108.20689 * 359.72212 * 21 19 18 23 23 C 1.50702 * 125.90376 * 180.25519 * 22 21 19 24 24 C 1.54275 * 110.02902 * 68.53868 * 23 22 21 25 25 C 1.54960 * 104.15714 * 217.13869 * 24 23 22 26 26 C 1.54889 * 102.78087 * 37.88544 * 25 24 23 27 27 C 1.53874 * 110.02980 * 311.32377 * 23 22 21 28 28 H 1.08992 * 109.46741 * 293.91056 * 1 2 3 29 29 H 1.08992 * 109.46928 * 173.90585 * 1 2 3 30 30 H 1.09003 * 109.47011 * 53.90473 * 1 2 3 31 31 H 0.97002 * 119.99338 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47036 * 85.17490 * 13 12 2 33 33 H 1.09002 * 109.47560 * 205.16832 * 13 12 2 34 34 H 1.08997 * 109.47251 * 325.17247 * 13 12 2 35 35 H 1.08006 * 126.12462 * 359.97438 * 18 17 14 36 36 H 1.08997 * 109.47005 * 89.99314 * 20 19 18 37 37 H 1.08993 * 109.47431 * 209.99775 * 20 19 18 38 38 H 1.08997 * 109.46701 * 330.00006 * 20 19 18 39 39 H 1.09001 * 110.01765 * 189.92956 * 23 22 21 40 40 H 1.09002 * 110.48597 * 335.78521 * 24 23 22 41 41 H 1.08996 * 110.48227 * 98.43249 * 24 23 22 42 42 H 1.09005 * 110.71963 * 279.57241 * 25 24 23 43 43 H 1.09001 * 110.76536 * 156.22768 * 25 24 23 44 44 H 1.09000 * 110.48861 * 203.40228 * 26 25 24 45 45 H 1.09001 * 110.59439 * 80.81979 * 26 25 24 46 46 H 1.08997 * 110.02810 * 238.56557 * 27 23 22 47 47 H 1.08993 * 110.03276 * 359.95061 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8267 -0.4197 -5.2206 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6907 1.1961 13 6 1.7530 -2.1201 1.3761 14 16 2.8703 0.1445 2.3446 15 8 3.5065 -0.8302 3.1599 16 8 3.5802 1.1642 1.6551 17 6 1.6962 0.9633 3.3721 18 6 1.5078 2.3005 3.4565 19 7 0.5221 2.5215 4.3511 20 6 -0.0041 3.8297 4.7484 21 7 0.0900 1.2788 4.8322 22 6 0.7900 0.3454 4.2402 23 6 0.6480 -1.1388 4.4593 24 6 -0.7032 -1.6288 3.8986 25 6 -1.1631 -2.7101 4.9089 26 6 -0.7178 -2.1191 6.2696 27 6 0.6390 -1.4507 5.9660 28 1 -0.3632 0.4165 0.9394 29 1 -0.3633 -1.0218 -0.1091 30 1 -0.3633 0.6054 -0.8304 31 1 0.7093 1.1618 -3.4844 32 1 2.5184 -2.6997 0.8598 33 1 1.7697 -2.3618 2.4389 34 1 0.7736 -2.3626 0.9638 35 1 2.0499 3.0558 2.9068 36 1 -0.8306 4.1032 4.0925 37 1 -0.3580 3.7816 5.7781 38 1 0.7848 4.5777 4.6699 39 1 1.4678 -1.6679 3.9733 40 1 -1.4214 -0.8095 3.8637 41 1 -0.5701 -2.0632 2.9079 42 1 -0.6595 -3.6573 4.7158 43 1 -2.2456 -2.8334 4.8769 44 1 -0.5960 -2.9115 7.0081 45 1 -1.4375 -1.3794 6.6203 46 1 1.4539 -2.1318 6.2111 47 1 0.7382 -0.5287 6.5387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906920213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:37 Heat of formation + Delta-G solvation = -4.462993 kcal Electronic energy + Delta-G solvation = -29991.780392 eV Core-core repulsion = 26110.118469 eV Total energy + Delta-G solvation = -3881.661923 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30322 -38.02544 -36.50705 -36.09093 -35.12166 -33.46265 -32.53407 -30.40975 -29.34861 -29.01276 -28.62158 -26.20555 -25.39351 -25.13456 -21.81456 -21.67514 -20.65042 -20.56391 -19.10812 -18.22578 -17.47759 -16.78475 -16.18978 -15.82056 -15.62087 -15.36944 -15.16733 -15.06002 -14.46315 -13.72485 -13.56235 -13.37823 -13.29998 -13.12649 -13.05238 -12.75609 -12.72151 -11.86026 -11.77454 -11.57473 -11.44773 -11.37623 -11.31587 -11.17809 -11.13320 -11.04656 -10.97548 -10.93590 -10.76920 -10.64723 -10.56930 -10.38264 -10.25087 -10.12352 -9.95699 -9.25372 -9.18078 -8.97632 -8.43775 -7.88679 -6.04760 -4.10080 1.15726 1.71674 2.39266 2.44353 3.32731 3.36810 3.40283 3.84640 4.24226 4.42366 4.51314 4.54090 4.66444 4.71003 4.80067 4.95162 5.00679 5.16445 5.19993 5.27480 5.37206 5.47135 5.55485 5.57102 5.69526 5.71252 5.77693 5.86072 5.94088 5.98539 6.07893 6.21434 6.29111 6.34109 6.38930 6.48058 6.55901 6.69708 6.82930 6.86387 6.87152 7.05780 7.49536 7.57934 7.67661 7.82211 8.06205 8.31113 8.91796 9.55219 11.01599 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.004502 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.364866 B = 6217.843616 C = 6921.933918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.272 3.728 3 H 0.056 0.944 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.979 5.979 13 C 0.103 3.897 14 S 2.711 3.289 15 O -0.977 6.977 16 O -0.964 6.964 17 C -0.806 4.806 18 C 0.175 3.825 19 N -0.369 5.369 20 C 0.096 3.904 21 N -0.294 5.294 22 C 0.172 3.828 23 C -0.035 4.035 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.113 4.113 28 H 0.009 0.991 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.263 0.737 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.192 0.808 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 0.526 15.682 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.169 3.831 3 H 0.073 0.927 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.820 5.820 13 C -0.043 4.043 14 S 2.799 3.201 15 O -0.967 6.967 16 O -0.954 6.954 17 C -0.902 4.902 18 C 0.023 3.977 19 N -0.146 5.146 20 C -0.045 4.045 21 N -0.114 5.114 22 C 0.003 3.997 23 C -0.056 4.056 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.151 4.151 28 H 0.028 0.972 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.209 0.791 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.999 1.158 16.574 17.350 hybrid contribution 0.156 -0.011 -1.344 1.353 sum -4.844 1.147 15.231 16.023 Atomic orbital electron populations 1.22098 0.98447 1.00619 0.99318 1.18686 0.91045 0.92838 0.80534 0.92663 1.21268 1.31516 1.12977 0.89842 0.91799 1.24895 0.94978 0.95011 0.98944 1.69872 1.36665 1.22767 1.23778 0.86562 0.79351 0.79591 0.81919 1.20241 1.21335 1.20144 1.57343 1.74208 1.17050 1.33374 1.21327 1.02184 0.81131 0.99610 1.01262 0.73407 0.73141 0.72308 1.93487 1.73147 1.60245 1.69803 1.93538 1.69600 1.59465 1.72810 1.31925 1.28091 1.03932 1.26246 1.22454 0.88961 0.96445 0.89834 1.48915 1.27452 1.06645 1.31612 1.21972 1.00644 0.79212 1.02706 1.77237 1.23189 0.87837 1.23147 1.21645 0.90801 0.95679 0.91566 1.20734 1.00371 0.86478 0.97974 1.22497 0.94957 0.98653 0.99337 1.22511 1.00642 0.98314 0.94596 1.22343 0.96780 0.99458 0.97311 1.22163 0.97930 1.01042 0.93939 0.97236 0.94567 0.89416 0.92758 0.92908 0.92440 0.91200 0.79150 0.90177 0.89102 0.89068 0.87735 0.91095 0.90314 0.91106 0.91507 0.91778 0.91695 0.91038 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.82 37.16 0.33 -2.97 16 2 C 0.27 6.57 2.63 -69.08 -0.18 6.39 16 3 H 0.06 1.47 7.06 -51.93 -0.37 1.10 16 4 C -0.52 -13.66 8.31 -34.44 -0.29 -13.95 16 5 H 0.06 1.67 7.25 -52.49 -0.38 1.29 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.53 11.39 55.43 0.63 -23.90 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 N -0.98 -20.38 3.06 -115.85 -0.36 -20.73 16 13 C 0.10 1.84 9.00 59.84 0.54 2.38 16 14 S 2.71 54.87 5.36 -107.50 -0.58 54.29 16 15 O -0.98 -20.20 15.48 -57.17 -0.89 -21.08 16 16 O -0.96 -22.17 16.52 -57.17 -0.94 -23.11 16 17 C -0.81 -14.23 6.15 -40.01 -0.25 -14.47 16 18 C 0.18 2.69 11.12 -17.23 -0.19 2.50 16 19 N -0.37 -5.11 4.01 -68.17 -0.27 -5.38 16 20 C 0.10 0.80 11.47 59.85 0.69 1.49 16 21 N -0.29 -4.66 12.20 33.67 0.41 -4.25 16 22 C 0.17 2.85 5.53 -82.40 -0.46 2.40 16 23 C -0.04 -0.52 3.26 -90.65 -0.30 -0.81 16 24 C -0.12 -1.53 6.36 -25.03 -0.16 -1.69 16 25 C -0.12 -1.30 6.91 -24.70 -0.17 -1.47 16 26 C -0.12 -1.28 6.83 -25.07 -0.17 -1.45 16 27 C -0.11 -1.42 6.41 -25.61 -0.16 -1.58 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.78 7.10 -51.93 -0.37 0.41 16 30 H 0.09 2.19 6.26 -51.93 -0.32 1.87 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.05 0.93 7.84 -51.93 -0.41 0.53 16 33 H 0.06 0.88 4.85 -51.93 -0.25 0.63 16 34 H 0.07 1.18 6.77 -51.93 -0.35 0.83 16 35 H 0.19 2.42 8.06 -52.48 -0.42 1.99 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 1.61 3.84 -51.93 -0.20 1.41 16 40 H 0.07 1.00 7.85 -51.93 -0.41 0.60 16 41 H 0.08 1.03 7.57 -51.93 -0.39 0.64 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.07 0.91 7.42 -51.93 -0.39 0.52 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -33.08 380.44 -9.34 -42.43 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.20 Total: 1.75 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -0.86 Total: -21.62 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.41 Total: -54.27 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.83 Total: -44.19 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 54.87 SS G_CDS: -0.58 Total: 54.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.08 -9.34 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906920213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.963 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds